Gene

KWMTBOMO08046  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA001037

Annotation

PREDICTED:_leucine--tRNA_ligase?_cytoplasmic_[Bombyx_mori]

Location

Bomo_Chr13(+):13612025-13616461      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.318 Mitochondrial   Reliability : 1.399 Nuclear   Reliability : 1

CDS

ATGGACGCCGCGCACTCGTTCCGTGTCTACTTGAAGAATCACTGTGCACTCAAGAAACCGAAGAAAGGCGAAACGCCTAAACCAGAGAAGAAGCCCAACAAGGCGGTCATTTGGGTCGCTAAGGAGTTCCCGAAGTGGCAACGCATTATTTTGACGACGCTCAAAGAACTTAACGGGCCGGACGGTCTCCCGGACAACAAGACGATCTCGAGCCGGCTGTCGCAGCTGGACGAGCTGCGGAAGTACTCTAAGCGCGTGATGCCGTTCGTGCAGGCGACGCGCGAGTGCGTGCGGCGCGACGGCGGCGCGGCGCTGGCGCTGGCGCTGCCCTTCGCCGAGGCCGCCGTGCTGCGGGACAACGCCGCCTACCTGCGAGCCACGCTCGATTTGGACGCGATAGAGGTGAAGTACACGGACAGCGCCGACGCGCCGGAGCGGAGCCGCGAGGAGTGCGCCCCCGGACAGCCGCACATCACGTTCAGCGCCGAGCCCGCCCTCCCGCTCGTCCTGCTCAACCCCACGCCGCTCAACGGACTCTTCACCCTCAGCGTCGACGTGGCTGACGGAGACACCGTCGACAAACTCAAGGCGAAACTTGCCAAGGACGTGAAGGCTATCAAAGATGTCACGAGCTTAAAGTTGTGGCGCTACAAGGATCCGATCTTGGGTCCGAGGAAGATTCCTGTTCCGGGTGATCACGAGAGCAAGTGTGAAGTTCTGCACGACGACTCCGTCTTCAAAGTAGATGTGAACGCAAATAAAGTTGAATTAGTTTCGAACGGAACTAATACGGAAATAGGTACACAATTGATGTACACTTACGAAAAGTAA

Protein

MDAAHSFRVYLKNHCALKKPKKGETPKPEKKPNKAVIWVAKEFPKWQRIILTTLKELNGPDGLPDNKTISSRLSQLDELRKYSKRVMPFVQATRECVRRDGGAALALALPFAEAAVLRDNAAYLRATLDLDAIEVKYTDSADAPERSREECAPGQPHITFSAEPALPLVLLNPTPLNGLFTLSVDVADGDTVDKLKAKLAKDVKAIKDVTSLKLWRYKDPILGPRKIPVPGDHESKCEVLHDDSVFKVDVNANKVELVSNGTNTEIGTQLMYTYEK

Similarity

Belongs to the class-I aminoacyl-tRNA synthetase family.
Belongs to the peptidase S1 family.

Uniprot

H9IUV7   A0A194RCH5   A0A2H1W166   A0A2A4JKL1   S4PAL2   A0A194Q7M7   + More
A0A212EX00   A0A0L7LGF9   A0A2J7PZ39   A0A2J7PZ66   A0A2J7PZ40   B4I2Z8   B4NXX9   T2FFJ2   Q9VQR8   Q8MRF8   B3N334   B4Q9L5   A0A0J9QV26   A0A1B6DI73   A0A0M4E9G2   A0A3L8E1W9   A0A026WH16   A0A1W4UUG4   A0A1W4X7L4   A0A3F2YWI8   A0A182SVE2   A0A1I8PHA6   A0A182Y3F3   A0A1B0BCW3   B4JQG2   A0A1A9XJM3   A0A310S846   B3MP31   A0A182RMD7   E9HF12   A0A0L7REL5   A0A182V6W9   B4LRU6   A0A182KDL7   A0A1B0FQF7   A0A182W6N8   A0A088AT22   A0A1A9ZCT3   A0A1B6LG07   Q7Q495   A0A182U1G9   A0A0P5GE93   A0A1Y9GLW8   A0A182L0W2   A0A1Y9J0P1   A0A1S4GYI9   A0A0A1X064   B4KK92   A0A182QC67   A0A1Y1KY55   A0A154P8F7   A0A0T6B471   A0A1S4FDN6   A0A0K8RLG4   Q0IF77   Q29MC7   A0A182M5L9   A0A224YSL5   U5EZJ1   A0A0P5P059   A0A131Y056   A0A0P5YJ27   A0A131YYA7   A0A0P5RRR0   A0A1L8DFT4   A0A0P5GI26   A0A0N8EMP0   A0A0P5Z8W3   A0A0P6BJD7   A0A0P5A2J4   A0A0P5NFA4   A0A0P5H9J9   A0A164L1X1   A0A0P5AAR8   A0A0P5KVK0   A0A0P4ZCK3   A0A0P5A8D4   A0A0L0CHJ7   T1PBJ8   A0A1I8ML26   L7M6M3   B4G9F6   A0A3B0K0P6   B7PFM8   A0A067QKD3   A0A3Q0JAS9   A0A1E1X9U6   W8C385   B0WIS0   Q99JK2   G3HHE4   A0A232F699   A0A1Q3G2K0  

Pubmed

19121390    26354079    23622113    22118469    26227816    17994087    + More
17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    22936249    30249741    24508170    25244985    21292972    12364791    20966253    25830018    28004739    17510324    15632085    28797301    26830274    26108605    25315136    25576852    24845553    28503490    24495485    15489334    21804562    28648823   

EMBL

BABH01000420    BABH01000421    BABH01000422    KQ460397    KPJ15302.1    ODYU01005711    + More
SOQ46831.1    NWSH01001158    PCG72316.1    GAIX01004956    JAA87604.1    KQ459439    KPJ01000.1    AGBW02011847    OWR46026.1    JTDY01001208    KOB74537.1    NEVH01020341    PNF21598.1    PNF21600.1    PNF21601.1    CH480820    EDW54143.1    CM000157    EDW87550.1    BT150267    AGV77169.1    AE014134    AAF51096.2    AHN54104.1    AY119663    AAM50317.1    CH954177    EDV57633.1    CM000361    EDX03626.1    CM002910    KMY87908.1    GEDC01011897    GEDC01000955    JAS25401.1    JAS36343.1    CP012523    ALC38838.1    QOIP01000002    RLU26189.1    KK107250    EZA54369.1    JXJN01012155    CH916372    EDV99142.1    KQ773364    OAD52391.1    CH902620    EDV31197.1    GL732633    EFX69668.1    KQ414609    KOC69270.1    CH940649    EDW64698.1    CCAG010020679    GEBQ01017350    JAT22627.1    AAAB01008964    EAA12235.2    GDIQ01242185    JAK09540.1    APCN01000798    GBXI01010249    JAD04043.1    CH933807    EDW12623.1    AXCN02000789    GEZM01073447    JAV65090.1    KQ434844    KZC08152.1    LJIG01009893    KRT82169.1    GADI01001872    JAA71936.1    CH477389    EAT42009.1    CH379060    EAL33767.2    AXCM01010852    GFPF01009441    MAA20587.1    GANO01000704    JAB59167.1    GDIQ01135517    JAL16209.1    GEFM01003941    JAP71855.1    GDIP01058192    JAM45523.1    GEDV01004909    JAP83648.1    GDIQ01102768    JAL48958.1    GFDF01008890    JAV05194.1    GDIQ01242184    JAK09541.1    GDIQ01011748    JAN82989.1    GDIP01047180    JAM56535.1    GDIP01014065    JAM89650.1    GDIP01205013    JAJ18389.1    GDIQ01146510    JAL05216.1    GDIQ01236930    JAK14795.1    LRGB01003216    KZS03725.1    GDIP01202658    JAJ20744.1    GDIQ01183887    JAK67838.1    GDIP01215069    JAJ08333.1    GDIP01202659    JAJ20743.1    JRES01000387    KNC31730.1    KA645348    AFP59977.1    GACK01005349    JAA59685.1    CH479180    EDW28986.1    OUUW01000004    SPP79186.1    ABJB010539766    DS703426    EEC05400.1    KK853238    KDR09525.1    GFAC01003327    JAT95861.1    GAMC01006209    JAC00347.1    DS231951    EDS28647.1    BC006060    AAH06060.1    JH000377    EGW05324.1    NNAY01000908    OXU25969.1    GFDL01001059    JAV33986.1   

Proteomes

UP000005204    UP000053240    UP000218220    UP000053268    UP000007151    UP000037510    + More
UP000235965    UP000001292    UP000002282    UP000000803    UP000008711    UP000000304    UP000092553    UP000279307    UP000053097    UP000192221    UP000192223    UP000075885    UP000075901    UP000095300    UP000076408    UP000092460    UP000001070    UP000092443    UP000007801    UP000075900    UP000000305    UP000053825    UP000075903    UP000008792    UP000075881    UP000092444    UP000075920    UP000005203    UP000092445    UP000007062    UP000075902    UP000075840    UP000075882    UP000076407    UP000009192    UP000075886    UP000076502    UP000008820    UP000001819    UP000075883    UP000076858    UP000037069    UP000095301    UP000008744    UP000268350    UP000001555    UP000027135    UP000079169    UP000002320    UP000001075    UP000215335   

PRIDE

H9IUV7    T2FFJ2    Q9VQR8    Q8MRF8    Q99JK2    G3HHE4    + More

Pfam

PF00133   tRNA-synt_1        + More
PF08264   Anticodon_1
PF10228   DUF2228
PF10283   zf-CCHH
PF09334   tRNA-synt_1g
PF00089   Trypsin
PF01406   tRNA-synt_1e

Interpro

IPR001412   aa-tRNA-synth_I_CS        + More
IPR009008   Val/Leu/Ile-tRNA-synth_edit       
IPR002300   aa-tRNA-synth_Ia       
IPR013155   M/V/L/I-tRNA-synth_anticd-bd       
IPR009080   tRNAsynth_Ia_anticodon-bd       
IPR004493   Leu-tRNA-synth_Ia_arc/euk       
IPR019361   HPF1       
IPR019406   APLF_PBZ       
IPR014729   Rossmann-like_a/b/a_fold       
IPR015413   Methionyl/Leucyl_tRNA_Synth       
IPR001314   Peptidase_S1A       
IPR009003   Peptidase_S1_PA       
IPR018114   TRYPSIN_HIS       
IPR001254   Trypsin_dom       
IPR033116   TRYPSIN_SER       
IPR032678   tRNA-synt_1_cat_dom       
IPR013783   Ig-like_fold       

SUPFAM

SSF50677   SSF50677        + More
SSF47323   SSF47323       
SSF50494   SSF50494       

Gene 3D

3.40.50.620     3.90.740.10     2.60.40.10    

CDD

cd00190  Tryp_SPc

ProteinModelPortal

H9IUV7   A0A194RCH5   A0A2H1W166   A0A2A4JKL1   S4PAL2   A0A194Q7M7   + More
A0A212EX00   A0A0L7LGF9   A0A2J7PZ39   A0A2J7PZ66   A0A2J7PZ40   B4I2Z8   B4NXX9   T2FFJ2   Q9VQR8   Q8MRF8   B3N334   B4Q9L5   A0A0J9QV26   A0A1B6DI73   A0A0M4E9G2   A0A3L8E1W9   A0A026WH16   A0A1W4UUG4   A0A1W4X7L4   A0A3F2YWI8   A0A182SVE2   A0A1I8PHA6   A0A182Y3F3   A0A1B0BCW3   B4JQG2   A0A1A9XJM3   A0A310S846   B3MP31   A0A182RMD7   E9HF12   A0A0L7REL5   A0A182V6W9   B4LRU6   A0A182KDL7   A0A1B0FQF7   A0A182W6N8   A0A088AT22   A0A1A9ZCT3   A0A1B6LG07   Q7Q495   A0A182U1G9   A0A0P5GE93   A0A1Y9GLW8   A0A182L0W2   A0A1Y9J0P1   A0A1S4GYI9   A0A0A1X064   B4KK92   A0A182QC67   A0A1Y1KY55   A0A154P8F7   A0A0T6B471   A0A1S4FDN6   A0A0K8RLG4   Q0IF77   Q29MC7   A0A182M5L9   A0A224YSL5   U5EZJ1   A0A0P5P059   A0A131Y056   A0A0P5YJ27   A0A131YYA7   A0A0P5RRR0   A0A1L8DFT4   A0A0P5GI26   A0A0N8EMP0   A0A0P5Z8W3   A0A0P6BJD7   A0A0P5A2J4   A0A0P5NFA4   A0A0P5H9J9   A0A164L1X1   A0A0P5AAR8   A0A0P5KVK0   A0A0P4ZCK3   A0A0P5A8D4   A0A0L0CHJ7   T1PBJ8   A0A1I8ML26   L7M6M3   B4G9F6   A0A3B0K0P6   B7PFM8   A0A067QKD3   A0A3Q0JAS9   A0A1E1X9U6   W8C385   B0WIS0   Q99JK2   G3HHE4   A0A232F699   A0A1Q3G2K0  

KEGG

101739599    K01869 leucyl-tRNA synthetase [EC:6.1.1.4] | (RefSeq) leucine--tRNA ligase, cytoplasmic

PATHWAY

00970    Aminoacyl-tRNA biosynthesis - Bombyx mori (domestic silkworm)

GO

GO:0005524   GO:0006429   GO:0002161   GO:0004823   GO:0042060   GO:0017101   GO:0004832   GO:0005737   GO:0006412   GO:0004812   GO:0004252   GO:0016021  

PANTHER

PTHR45794  

Length:

276

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0392000000000001

Exp number, first 60 AAs:

0

Total prob of N-in:

0.06700

outside

1  -  276

 

 

Pi

13.937979

Theta

19.033881

Tajima's D

0.062546

CLR

1.039865

CSRT

0.392280385980701

Interpretation

Uncertain