Gene

KWMTBOMO08043

Pre Gene Modal

BGIBMGA001036

Annotation

PREDICTED:_UPF0609_protein_C4orf27_homolog_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr13(+):13589645-13595594      View in EpiBrowser

Full name

Histone PARylation factor 1-like      

Location in the cell

Cytoplasmic   Reliability : 1.779 Nuclear   Reliability : 2.286

CDS

ATGTCAGAAGCTTGTAATTCAAATGCTGAAGATTCGAGAACTGTATGCAAATACGGCGAAAAGTGTTATCAAAAAAATCCCGAGCACCACAAAAAATACAAACATCCAGGGCAAGCAGGAGCTTTTGAGAAAAAAAATGAGAAGAATCCCGGAAAGCTCAGAGAAAAACGTTTTAATCCATATTCGAGCGATGACAAACCTGCTAAGCAGCATAAAGTAGGAGATAAAAAACCTGACATCGAATTAGAAAATGGATCTGGTACATCAGAGAGCAGTACAGTAGTAAAGATTGACACGGTTAATCCAATCCACGCACTGAAGCTCCCTAAAAACATAACTTATTATGACAGTTCTGATCATTCAGTACTAAAAGAATTGTTTCTGGTAAAAATGCCTTCTGATTTCTACAAATTTTTCGATTGCTTAAACACTGATGATGCAATTGTTAAAATATGTTCATCTGTGAATTTAGAACTGATTGGGCCCTTTGAGTTGTTGTTAGGAAAATTACCTCAATTAGATGACAAAGAATTATATTTAGTGCACTGGAGATTTTTCTATGATCCCCCTGAATTTCAGGCTGTTTTGAAAATAAAAGGTAAAAGTGAATATCACATTGGATACTTTAGAGATGACCCAAACGATGAGCCAGTCTTCTTAGCGAGCAATGATAGTGCGAAAGACTGCCAAATTAAACCATTGGCTGATAATATTTTTGGGGCTGTATATTTGCACTTGAAAAACGAAAATAAGTCACCATTCACGGCATTGGCGTGTAAAAAGTTAATGGAAACAATAAAAAAATATGCAGACGAACATAACTTTTCTCTGAATCCCTATGATATGAAGAAAAGAAAGTCAACAATCTTGACAAACAGTTTTCATCGAGCTGGTATTGTTGTGCCTTATAATAAGAAAACTCAACTTGGTTATAGACCTCTGGTCGAAAATGATGTTAATTTGAAAAAGTTATTTGATAAGCTGCAGGCGGCCAAAACTCAAAGTGAAAAGGACAATTTATTGTCTGATTTACAGCCAATTATAACATACGCCAGCATAGCGATGGATGAGTGTGACTTTGGAACTGGTGTGGAAATGGGAATCAATCTTTTTTGTTCTGGTTTAAAGGAGTTAGAATCTAATGTTTTGGGTTGCATTTGTCCAGCATATAATCTTTTGAATAGAGGAGAATTCAGTAAAATTATACAGGCGCACATGAAGTATCGTCGGAAGGGACCAAATGTTTCATTGTTAAATCTTTTCGAACACTAA

Protein

MSEACNSNAEDSRTVCKYGEKCYQKNPEHHKKYKHPGQAGAFEKKNEKNPGKLREKRFNPYSSDDKPAKQHKVGDKKPDIELENGSGTSESSTVVKIDTVNPIHALKLPKNITYYDSSDHSVLKELFLVKMPSDFYKFFDCLNTDDAIVKICSSVNLELIGPFELLLGKLPQLDDKELYLVHWRFFYDPPEFQAVLKIKGKSEYHIGYFRDDPNDEPVFLASNDSAKDCQIKPLADNIFGAVYLHLKNENKSPFTALACKKLMETIKKYADEHNFSLNPYDMKKRKSTILTNSFHRAGIVVPYNKKTQLGYRPLVENDVNLKKLFDKLQAAKTQSEKDNLLSDLQPIITYASIAMDECDFGTGVEMGINLFCSGLKELESNVLGCICPAYNLLNRGEFSKIIQAHMKYRRKGPNVSLLNLFEH

Similarity

Belongs to the HPF1 family.

Keywords

Complete proteome   Phosphoprotein   Reference proteome  

Feature

chain  Histone PARylation factor 1-like

Uniprot

A0A194Q634   A0A3S2P4Q5   S4PPS2   A0A0L7LGJ0   A0A2H1W167   A0A2A4IXK1   + More
A0A194RCH5   A0A2J7PZ31   A0A067QMU3   F4W6H7   A0A2R7WRF2   A0A1Y1MQY9   A0A195E4U2   A0A151X2L3   A0A158P284   A0A195FIY3   A0A195D300   A0A0A9XJM3   A0A026WXL8   A0A224XQT8   A0A0V0G7M6   A0A0N0BEK4   A0A1B6IWT8   A0A3L8DBN7   E2AJW9   A0A1B6FYY8   A0A1I8NBW3   A0A1B6M6S4   R4G838   A0A0A1X6E9   A0A1I8Q1V4   B4LYH3   A0A1B0G9I4   A0A2P8YE00   B4KAH5   A0A1A9UNE7   A0A087ZQU3   A0A0L7R0N9   J3JTU3   A0A2P2I1F9   U4UYZ6   A0A0P4WJP2   A0A0L0CFB4   A0A1B0A551   A0A3B0JLH0   B3NYH2   A0A034WEP5   W8C1U2   A0A0P4WCG8   A0A0K8UT35   A0A1E1X899   B4NJI0   A0A0B6ZV36   A0A2A3E1Z7   B4G4A1   B4PUY5   T1IPC9   B3LWD6   A0A1B0BKK5   Q17LN5   T1GEC4   Q297K4   A0A1A9WGT1   U5EWE8   Q9VNI3   B4JG90   A0A310SHB5   A0A1A9Y6G2   A0A3R7PF10   B4QXK3   E2BAP3   A0A1W4UWY0   A0A1W4XJ81   A0A1Q3F0S1   A0A293M7Z2   B4I477   A0A0A1XRZ3   A0A0P4VRS3   A0A336KMF4   A0A0L8GDE0   A0A1B6FXQ4   A0A1B6J949   B0X9U8   E9H657   A0A2R2MTZ9   A0A0C9RV57   W4Z4D0   A0A2C9JKR6   W5JVB7   J9K6R0   A0A1L8DCI0   A0A0M4EUI8   A0A232EG58   D2A0Z5   A0A0J7L9Y2   A0A2S2NKK5  

Pubmed

26354079    23622113    26227816    24845553    21719571    28004739    + More
21347285    25401762    26823975    24508170    30249741    20798317    25315136    25830018    17994087    29403074    22516182    23537049    26108605    25348373    24495485    28503490    17550304    17510324    15632085    10731132    12537572    12537569    18327897    27129103    21292972    26131772    15562597    20920257    23761445    28648823    18362917    19820115   

EMBL

KQ459439    KPJ00998.1    RSAL01000023    RVE52291.1    GAIX01000057    JAA92503.1    + More
JTDY01001208    KOB74535.1    ODYU01005711    SOQ46829.1    NWSH01004789    PCG64687.1    KQ460397    KPJ15302.1    NEVH01020341    PNF21588.1    KK853238    KDR09527.1    GL887707    EGI70312.1    KK855353    PTY22134.1    GEZM01024025    JAV88051.1    KQ979657    KYN19922.1    KQ982580    KYQ54480.1    ADTU01007023    ADTU01007024    KQ981523    KYN40331.1    KQ976885    KYN07278.1    GBHO01023753    GBRD01014240    GDHC01020411    JAG19851.1    JAG51586.1    JAP98217.1    KK107077    EZA60563.1    GFTR01005616    JAW10810.1    GECL01002001    JAP04123.1    KQ435826    KOX72004.1    GECU01016305    JAS91401.1    QOIP01000010    RLU17754.1    GL440100    EFN66285.1    GECZ01030279    GECZ01024065    GECZ01014364    GECZ01009130    JAS39490.1    JAS45704.1    JAS55405.1    JAS60639.1    GEBQ01008352    JAT31625.1    ACPB03013305    GAHY01001647    JAA75863.1    GBXI01008049    JAD06243.1    CH940650    EDW66969.1    CCAG010015404    PYGN01000670    PSN42490.1    CH933806    EDW15688.1    KQ414670    KOC64422.1    BT126652    AEE61615.1    IACF01002166    LAB67829.1    KB632433    ERL95560.1    GDRN01051783    JAI66367.1    JRES01000562    KNC30194.1    OUUW01000007    SPP83164.1    CH954181    EDV47953.1    GAKP01006180    JAC52772.1    GAMC01010886    JAB95669.1    GDRN01051784    JAI66366.1    GDHF01022598    JAI29716.1    GFAC01003718    JAT95470.1    CH964272    EDW83904.1    HACG01025584    CEK72449.1    KZ288439    PBC25718.1    CH479179    EDW25139.1    CM000160    EDW97792.1    JH431256    CH902617    EDV43769.2    JXJN01015973    JXJN01015974    CH477214    EAT47576.1    CAQQ02034565    CM000070    EAL28201.1    GANO01000612    JAB59259.1    AE014297    AY069557    CH916369    EDV93657.1    KQ769812    OAD52832.1    QCYY01002583    ROT69305.1    CM000364    EDX11789.1    GL446810    EFN87239.1    GFDL01013916    JAV21129.1    GFWV01010521    MAA35250.1    CH480821    EDW55020.1    GBXI01000531    JAD13761.1    GDKW01003791    JAI52804.1    UFQS01000449    UFQT01000449    SSX04103.1    SSX24468.1    KQ422351    KOF75042.1    GECZ01031236    GECZ01014936    GECZ01003688    JAS38533.1    JAS54833.1    JAS66081.1    GECU01012038    JAS95668.1    DS232551    EDS43300.1    GL732596    EFX72786.1    GBZX01001369    JAG91371.1    AAGJ04155011    ADMH02000343    ETN66900.1    ABLF02032717    GFDF01009915    JAV04169.1    CP012526    ALC46767.1    NNAY01004854    OXU17336.1    KQ971338    EFA01605.2    LBMM01000122    KMR04850.1    GGMR01004677    MBY17296.1   

Proteomes

UP000053268    UP000283053    UP000037510    UP000218220    UP000053240    UP000235965    + More
UP000027135    UP000007755    UP000078492    UP000075809    UP000005205    UP000078541    UP000078542    UP000053097    UP000053105    UP000279307    UP000000311    UP000095301    UP000015103    UP000095300    UP000008792    UP000092444    UP000245037    UP000009192    UP000078200    UP000005203    UP000053825    UP000030742    UP000037069    UP000092445    UP000268350    UP000008711    UP000007798    UP000242457    UP000008744    UP000002282    UP000007801    UP000092460    UP000008820    UP000015102    UP000001819    UP000091820    UP000000803    UP000001070    UP000092443    UP000283509    UP000000304    UP000008237    UP000192221    UP000192223    UP000001292    UP000053454    UP000002320    UP000000305    UP000085678    UP000007110    UP000076420    UP000000673    UP000007819    UP000092553    UP000215335    UP000007266    UP000036403   

PRIDE

Q9VNI3   

Pfam

PF10283   zf-CCHH        + More
PF10228   DUF2228
PF00133   tRNA-synt_1
PF08264   Anticodon_1

Interpro

IPR019361   HPF1        + More
IPR019406   APLF_PBZ       
IPR013155   M/V/L/I-tRNA-synth_anticd-bd       
IPR009080   tRNAsynth_Ia_anticodon-bd       
IPR004493   Leu-tRNA-synth_Ia_arc/euk       
IPR001412   aa-tRNA-synth_I_CS       
IPR009008   Val/Leu/Ile-tRNA-synth_edit       
IPR002300   aa-tRNA-synth_Ia       

SUPFAM

SSF50677   SSF50677        + More
SSF47323   SSF47323       

ProteinModelPortal

A0A194Q634   A0A3S2P4Q5   S4PPS2   A0A0L7LGJ0   A0A2H1W167   A0A2A4IXK1   + More
A0A194RCH5   A0A2J7PZ31   A0A067QMU3   F4W6H7   A0A2R7WRF2   A0A1Y1MQY9   A0A195E4U2   A0A151X2L3   A0A158P284   A0A195FIY3   A0A195D300   A0A0A9XJM3   A0A026WXL8   A0A224XQT8   A0A0V0G7M6   A0A0N0BEK4   A0A1B6IWT8   A0A3L8DBN7   E2AJW9   A0A1B6FYY8   A0A1I8NBW3   A0A1B6M6S4   R4G838   A0A0A1X6E9   A0A1I8Q1V4   B4LYH3   A0A1B0G9I4   A0A2P8YE00   B4KAH5   A0A1A9UNE7   A0A087ZQU3   A0A0L7R0N9   J3JTU3   A0A2P2I1F9   U4UYZ6   A0A0P4WJP2   A0A0L0CFB4   A0A1B0A551   A0A3B0JLH0   B3NYH2   A0A034WEP5   W8C1U2   A0A0P4WCG8   A0A0K8UT35   A0A1E1X899   B4NJI0   A0A0B6ZV36   A0A2A3E1Z7   B4G4A1   B4PUY5   T1IPC9   B3LWD6   A0A1B0BKK5   Q17LN5   T1GEC4   Q297K4   A0A1A9WGT1   U5EWE8   Q9VNI3   B4JG90   A0A310SHB5   A0A1A9Y6G2   A0A3R7PF10   B4QXK3   E2BAP3   A0A1W4UWY0   A0A1W4XJ81   A0A1Q3F0S1   A0A293M7Z2   B4I477   A0A0A1XRZ3   A0A0P4VRS3   A0A336KMF4   A0A0L8GDE0   A0A1B6FXQ4   A0A1B6J949   B0X9U8   E9H657   A0A2R2MTZ9   A0A0C9RV57   W4Z4D0   A0A2C9JKR6   W5JVB7   J9K6R0   A0A1L8DCI0   A0A0M4EUI8   A0A232EG58   D2A0Z5   A0A0J7L9Y2   A0A2S2NKK5  

PDB

2KUO     E-value=0.015322,     Score=90

KEGG

101739967    no KO assigned | (RefSeq) UPF0609 protein C4orf27 homolog

GO

GO:0005524   GO:0004823   GO:0006429   GO:0002161   GO:0008270   GO:0072572   GO:0006974   GO:0018312   GO:0042393   GO:0010835   GO:0005634   GO:0016021  

PANTHER

PTHR13386   PTHR45794  

Length:

423

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00259

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01006

outside

1  -  423

 

 

Pi

24.058095

Theta

19.944262

Tajima's D

0.508401

CLR

0.575295

CSRT

0.523273836308185

Interpretation

Uncertain