Gene

KWMTBOMO08037  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA001032

Annotation

PREDICTED:_sorting_nexin_lst-4_isoform_X1_[Papilio_xuthus]

Location

Bomo_Chr13(+):13515545-13517973      View in EpiBrowser

Full name

Sorting nexin      

Location in the cell

Nuclear   Reliability : 2.478

CDS

ATGGCGACCCAAGTGCAGGCTTTGTATGACTTCACTGGTGAGCCTGGCACCACAGAGATGTCCATAACTTGTGGAGAGGTGCTCACACTGCTCAACACAGAAATCGGAGAAGGCTGGTGGGAAGGAAAAAAATCTAATGGAGAAACTGGTCTATTTCCTGCTGCATATGTCAGAAAACTGACACCAGAAGAATCAATTCAAACTAAAGCTGCTCCTCCAGCACCTAGATATGATCAAGCAGCAGATGACTGGGGCGAACAACACTACAGTGCAGGAGATAACAATTACCAAAGAGGAGTTTCGCATGAAGATGGCTGGGATGATGACTGGGAAGATGATACATACTCAGAGATAGGACCAGCCCAGCAACAAAACAAGACATCGCAGTACAACCAGCAATCATCCATTGTGATTCCCGGTATGCCTATTAATGATTATAATCAACACATAGATGACACATCTTCAAATTATAGCTCATCAGTGGGCACAGTTAGAAAAAACAAATTTGCACCATCTTCAAAGATTAGTGGAGAAAGCTACCTGCTGGCAACCCTTAATGTAGAAGTACCAGACTCTGAAAAGGTCTACATTATCCAAGATGAAGATGGATATATTTGGTCCCCAATTACTCAGCCATATATTGTGACTGTGGCCTCTCCAAAAAAGGAATCTAAATTCAAAGGGATCAAGAGTTTTATAGCCTATCAACTGACTCCTTCATTCAATAATATTCAAGTGTCCAGGAGATACAAACACTTTGACTGGCTCCATGAGAGACTACAAGAAAAGTTCACACTTATTCCAATCCCCCCTCTGCCTGACAAACAGATATCTGGAAGATATGATGAGCAACTAATCGAACGCAGGCGAGTTCAGCTCCAAGAGTTTGTAGATTGGATGTGCAAGCACCCTGTGCTCTCCAGAAGCGAGGTTTGGCAACACTTCTTAACATGTACTGATGAAAAGAGATGGAAAGCTGGTAAAAGGCAAGCTGAAAAAGATAATTTGCTAGGTCTAAATTATTGTGTTTCACTAGTGGTACCTGAGAAAGCATTATTGCAATCACAAGTTGATCATATCACAGAACAGTGCCACACTTTCATTAACAGTGTCGACACAGCCATCAAGTCTGTGTCTAGCATGTGCATTGTGCAAACAAAACGTTTCCAAGGACCATACAAGAGTGACTGCCAGAAAATAGGAGAAGCATTTTATAGTCTTGGCAATGCCTTAAGCTTGGATGAAGGTACCATAGTATCAACATCTAAGCTGACTTCAGCTATTAAAATGACAGGTGGTGTCTACATTGATATTGGTAGGATGTATGATGAACAACCGAAGTATGATTGGGAGCCACTGGGTGATAAATTTCATTTATACAAAGGAATTGCAGCTAGTTTTCCTGATGTCCTGGCCAATCATAAGGGTGCAGTGCAAAAGAAAAGAGAGTGTGAAAGACTGACTGCTGAAAACAAAATGGAGGTTGCACAATTAAATGAAGTCTTGAGAAGGACCGATGTTATATCATATGCGCTTCTTGCCGAAATCAACCATTTCAAATCAGAACGGACTGTTGATATAAAAGCCACCATGCAAAAATTCTTGAAGCAACAAATCAACTTTTACAAGAAAATAGTAGATAAGTTGGAAACCACGCTAAGATACTATGATGATTAG

Protein

MATQVQALYDFTGEPGTTEMSITCGEVLTLLNTEIGEGWWEGKKSNGETGLFPAAYVRKLTPEESIQTKAAPPAPRYDQAADDWGEQHYSAGDNNYQRGVSHEDGWDDDWEDDTYSEIGPAQQQNKTSQYNQQSSIVIPGMPINDYNQHIDDTSSNYSSSVGTVRKNKFAPSSKISGESYLLATLNVEVPDSEKVYIIQDEDGYIWSPITQPYIVTVASPKKESKFKGIKSFIAYQLTPSFNNIQVSRRYKHFDWLHERLQEKFTLIPIPPLPDKQISGRYDEQLIERRRVQLQEFVDWMCKHPVLSRSEVWQHFLTCTDEKRWKAGKRQAEKDNLLGLNYCVSLVVPEKALLQSQVDHITEQCHTFINSVDTAIKSVSSMCIVQTKRFQGPYKSDCQKIGEAFYSLGNALSLDEGTIVSTSKLTSAIKMTGGVYIDIGRMYDEQPKYDWEPLGDKFHLYKGIAASFPDVLANHKGAVQKKRECERLTAENKMEVAQLNEVLRRTDVISYALLAEINHFKSERTVDIKATMQKFLKQQINFYKKIVDKLETTLRYYDD

Similarity

Belongs to the sorting nexin family.

Feature

chain  Sorting nexin

Uniprot

H9IUV2   A0A194RCG0   A0A194Q7L2   A0A0L7LRJ5   A0A212FCL3   A0A2H1UZT0   + More
A0A1E1W714   A0A2J7PXW7   A0A2J7PXU3   A0A067R133   A0A1B0CA89   A0A1B0D563   A0A1L8DVN0   U5EZN9   A0A1B6HWD0   A0A1Y1MFI1   A0A182RR17   A0A1Q3F3T1   A0A182PUK8   A0A1Q3F4K7   A0A1Q3F504   A0A1W4X5B2   A0A3B0K193   A0A182YL26   A0A182HH61   A0A182L4N4   A0A182N3L0   A0A182X6Q6   Q29EF9   B4H1Y9   A0A1B6DKN3   A0A182TXV3   A0A182UTP8   A0A182FVT9   Q7PZ64   A0A2M4ACI2   A0A2M4AC76   A0A182W2E0   W5J6I3   A0A2M4AC81   A0A084WJ38   E2BN35   A0A0A1XA87   A0A023EU45   A0A182GJ82   D3TRI4   W8BRJ0   A0A034VDN6   A0A1A9XHI9   A0A1B0BHV3   A0A2M3ZHD8   A0A182MA38   B0WRZ3   A0A336LU90   A0A0K8W2G7   A0A182IRN7   B3NGK5   B4HL95   A0A0J9RSV4   Q9NCC3   B4PED5   A0A1A9W7H7   A0A2M4BIC8   A0A2M4BIB4   B4QNM9   A0A1B6M8Q9   B4LBR4   A0A0M5JB09   A0A1W4UKY9   B4L998   A0A2M3Z5V5   A0A026WNS9   A0A1I8MXY7   A0A158NQY9   A0A1B6GZJ7   B4MX98   A0A195B0E8   A0A310SNI3   E0V9Z0   A0A151WMD4   A0A0P6E5K5   A0A0P5JN71   A0A0P5SAN3   A0A0P6C2I7   A0A0P5PU23   A0A0P5H6L7   A0A0P5MN77   A0A0P5QNC6   A0A0L7R3B0   A0A0P5MYJ2   A0A0P5RTG8   A0A0P5RDL1   A0A1B6HV50   B4J1I5   A0A0P5N939   B3MA80   E9H8V4   A0A0P5WAU5   A0A1A9Z4L2  

Pubmed

19121390    26354079    26227816    22118469    24845553    28004739    + More
25244985    20966253    15632085    17994087    12364791    20920257    23761445    24438588    20798317    25830018    24945155    26483478    20353571    24495485    25348373    22936249    10823906    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    17550304    24508170    30249741    25315136    21347285    20566863    21292972   

EMBL

BABH01000428    KQ460397    KPJ15287.1    KQ459439    KPJ00985.1    JTDY01000244    + More
KOB78080.1    AGBW02009165    OWR51485.1    ODYU01000029    SOQ34107.1    GDQN01009049    GDQN01008274    JAT82005.1    JAT82780.1    NEVH01020852    PNF21154.1    PNF21155.1    KK852819    KDR15627.1    AJWK01003422    AJVK01003327    GFDF01003596    JAV10488.1    GANO01000436    JAB59435.1    GECU01028725    JAS78981.1    GEZM01037444    JAV82067.1    GFDL01012834    JAV22211.1    GFDL01012555    JAV22490.1    GFDL01012403    JAV22642.1    OUUW01000002    SPP77158.1    APCN01002389    CH379070    EAL30102.1    CH479203    EDW30341.1    GEDC01011045    JAS26253.1    AAAB01008986    EAA00038.4    GGFK01005111    MBW38432.1    GGFK01005074    MBW38395.1    ADMH02001988    ETN60067.1    GGFK01005083    MBW38404.1    ATLV01023972    KE525347    KFB50232.1    GL449382    EFN82939.1    GBXI01006704    JAD07588.1    JXUM01072950    GAPW01000690    KQ562749    JAC12908.1    KXJ75217.1    JXUM01067638    KQ562460    KXJ75862.1    CCAG010006049    EZ424036    ADD20312.1    GAMC01010674    JAB95881.1    GAKP01019052    JAC39900.1    JXJN01014603    GGFM01007178    MBW27929.1    AXCM01010654    DS232063    EDS33611.1    UFQT01000114    SSX20229.1    GDHF01006941    JAI45373.1    CH954178    EDV51241.1    CH480815    EDW40914.1    CM002912    KMY98737.1    AF223381    AE014296    AY069705    AAF34701.1    AAF50219.2    AAL39850.1    CM000159    EDW92973.1    GGFJ01003656    MBW52797.1    GGFJ01003655    MBW52796.1    CM000363    EDX09896.1    GEBQ01007679    JAT32298.1    CH940647    EDW68691.1    CP012525    ALC43731.1    CH933816    EDW17273.1    GGFM01003151    MBW23902.1    KK107139    QOIP01000003    EZA57712.1    RLU24345.1    ADTU01023705    GECZ01001923    JAS67846.1    CH963876    EDW76931.1    KQ976691    KYM77953.1    KQ760801    OAD58972.1    DS235001    EEB10196.1    KQ982944    KYQ48978.1    GDIQ01092089    GDIQ01079499    LRGB01001005    JAN15238.1    KZS14197.1    GDIQ01196151    JAK55574.1    GDIQ01096242    JAL55484.1    GDIP01022116    JAM81599.1    GDIQ01124182    JAL27544.1    GDIQ01232138    JAK19587.1    GDIQ01161072    JAK90653.1    GDIQ01121727    JAL29999.1    KQ414663    KOC65266.1    GDIQ01157671    JAK94054.1    GDIQ01105645    JAL46081.1    GDIQ01121726    JAL30000.1    GECU01029149    JAS78557.1    CH916366    EDV95876.1    GDIQ01152624    JAK99101.1    CH902618    EDV39094.1    GL732606    EFX71786.1    GDIQ01140889    GDIP01088709    GDIP01083598    JAL10837.1    JAM15006.1   

Proteomes

UP000005204    UP000053240    UP000053268    UP000037510    UP000007151    UP000235965    + More
UP000027135    UP000092461    UP000092462    UP000075900    UP000075885    UP000192223    UP000268350    UP000076408    UP000075840    UP000075882    UP000075884    UP000076407    UP000001819    UP000008744    UP000075902    UP000075903    UP000069272    UP000007062    UP000075920    UP000000673    UP000030765    UP000008237    UP000069940    UP000249989    UP000092444    UP000092443    UP000092460    UP000075883    UP000002320    UP000075880    UP000008711    UP000001292    UP000000803    UP000002282    UP000091820    UP000000304    UP000008792    UP000092553    UP000192221    UP000009192    UP000053097    UP000279307    UP000095301    UP000005205    UP000007798    UP000078540    UP000009046    UP000075809    UP000076858    UP000053825    UP000001070    UP000007801    UP000000305    UP000092445   

PRIDE

H9IUV2    Q9NCC3   

Pfam

PF10456   BAR_3_WASP_bdg        + More
PF14604   SH3_9
PF00787   PX
PF00018   SH3_1
PF07653   SH3_2

Interpro

IPR019497   Sorting_nexin_WASP-bd-dom        + More
IPR036028   SH3-like_dom_sf       
IPR001683   Phox       
IPR001452   SH3_domain       
IPR027267   AH/BAR_dom_sf       
IPR036871   PX_dom_sf       
IPR014536   Snx9_fam       

SUPFAM

SSF64268   SSF64268        + More
SSF50044   SSF50044       
SSF103657   SSF103657       

Gene 3D

1.20.1270.60     3.30.1520.10    

ProteinModelPortal

H9IUV2   A0A194RCG0   A0A194Q7L2   A0A0L7LRJ5   A0A212FCL3   A0A2H1UZT0   + More
A0A1E1W714   A0A2J7PXW7   A0A2J7PXU3   A0A067R133   A0A1B0CA89   A0A1B0D563   A0A1L8DVN0   U5EZN9   A0A1B6HWD0   A0A1Y1MFI1   A0A182RR17   A0A1Q3F3T1   A0A182PUK8   A0A1Q3F4K7   A0A1Q3F504   A0A1W4X5B2   A0A3B0K193   A0A182YL26   A0A182HH61   A0A182L4N4   A0A182N3L0   A0A182X6Q6   Q29EF9   B4H1Y9   A0A1B6DKN3   A0A182TXV3   A0A182UTP8   A0A182FVT9   Q7PZ64   A0A2M4ACI2   A0A2M4AC76   A0A182W2E0   W5J6I3   A0A2M4AC81   A0A084WJ38   E2BN35   A0A0A1XA87   A0A023EU45   A0A182GJ82   D3TRI4   W8BRJ0   A0A034VDN6   A0A1A9XHI9   A0A1B0BHV3   A0A2M3ZHD8   A0A182MA38   B0WRZ3   A0A336LU90   A0A0K8W2G7   A0A182IRN7   B3NGK5   B4HL95   A0A0J9RSV4   Q9NCC3   B4PED5   A0A1A9W7H7   A0A2M4BIC8   A0A2M4BIB4   B4QNM9   A0A1B6M8Q9   B4LBR4   A0A0M5JB09   A0A1W4UKY9   B4L998   A0A2M3Z5V5   A0A026WNS9   A0A1I8MXY7   A0A158NQY9   A0A1B6GZJ7   B4MX98   A0A195B0E8   A0A310SNI3   E0V9Z0   A0A151WMD4   A0A0P6E5K5   A0A0P5JN71   A0A0P5SAN3   A0A0P6C2I7   A0A0P5PU23   A0A0P5H6L7   A0A0P5MN77   A0A0P5QNC6   A0A0L7R3B0   A0A0P5MYJ2   A0A0P5RTG8   A0A0P5RDL1   A0A1B6HV50   B4J1I5   A0A0P5N939   B3MA80   E9H8V4   A0A0P5WAU5   A0A1A9Z4L2  

PDB

4AKV     E-value=2.89425e-77,     Score=736

KEGG

101740506    K17923 sorting nexin-9/18/33 | (RefSeq) sorting nexin lst-4

GO

GO:0035091   GO:0000278   GO:0015031   GO:0000045   GO:0005938   GO:0030032   GO:0001956   GO:0043025   GO:0048471   GO:0071212   GO:0042734   GO:1990709   GO:0019900   GO:0071456   GO:0006886   GO:0000281   GO:0006897   GO:0005623   GO:0005546   GO:0005886   GO:0043195   GO:0005515   GO:0005975   GO:0016021   GO:0016020   GO:0005524   GO:0006412   GO:0016876   GO:0043039  

Length:

558

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00213

Exp number, first 60 AAs:

0.00049

Total prob of N-in:

0.00234

outside

1  -  558

 

 

Pi

13.444147

Theta

11.077705

Tajima's D

-0.193951

CLR

1.338827

CSRT

0.326033698315084

Interpretation

Uncertain