Gene

KWMTBOMO08033

Pre Gene Modal

BGIBMGA001028

Annotation

PREDICTED:_tetratricopeptide_repeat_protein_17_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr13(+):13211150-13236241      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 2.218

CDS

ATGAACTACATTAACTTTTTATGGTTATTCGGTTTGTGTACCGTTCATGCAACGACGATTGCCACACACTGGATGGTTACTGAAACAGGACTGATACAACCTCGAGCTGACTCTCCATTCATAATGGAACATCCCAATGATCTATTAGCATTCTTAAATCAAGACACGAGATGGGATAACATCCACAACCTGTATTATGATTTATATAACCGCCAACAAATCATTGATCAGCTTTGGCTTGACATTGAAAAGGGTACTGAAGTGACAACTATACTCACTTCCAATCAACACTGTGTTAGAGTGGGACAGCTGAATATTATAGATTGGTATACATCATTCTTAGAAGATGGCAAATCGAAAGGAGTACCCGATGAGGATTTTTTACTTAGAGAGACTGATTATGGAGATACCGATGTACCTGATTGTAAAAAGATATCTTCATTGACATTTAGCATGTTTGCCTTTGAGCATTTAGAGGGTTTGAATCAAAGAGAGAATTTATCAATTGATCCTGAACTGTCACTCCCAGAACAAATAACTCCCATTATGACTGTTGATCCATTTGGTCACTGGCTTGCAGCAATGCTAAGGCGGAATAACTCTTCCTGGCTTCATTATAACATGGCTTCTCTATATTGGAGAGTAAAAGGAAATGCACCTAAAGCTATGGAGTGCAGCAGAAGAGCTGTTCATTACGCTCCTAGAAAGTATAAAGACATAGCTTTATTGAGCATGGGTACAATACTTCACCGCAGCAAAAGAACCGAAGATGCTATAGTAGTTCTCAGAGCAGCTACTGATCACGATCCGACATTCACATACAATCATTTCTCTCTAGCCAATGCCTATGCTGTGTTCGGTGACTTCAATAGTTCTTTAAAACATTTCGCTGAGTGTCTCAAACTGAATCCTACTTTTGAATTGGCAGTGCGACATAAAATTGCAGTTTTATGTCACCTTTATGTGTCTGATACAATTGAAGAGTTAAAGGAAACCCTACAAAAACTGCGCCAAGAGCTAATAGAATATGCAAGAAGAGAGAGTGAATGGCTAAAAAGTCAAGCTGCGTTTTTGAGGACAATGAAACATGAAGAAGAATTTGATTACCGAAATATAGACAATAATTGTAAAAAGATGACCAATATAACTGGTTTAAAAATAAAAGAACTGAAACTACAAGGAGACAGAAACTCATTGCTCCAATATTTCTTGGACAGTCCGATGTACAACGATCAATGGTTGAAGGAGAAAGGTGTACTCGCAATAGAATCGGCCGGGAATCTCCAGAAACTGGTCAAACACATCCGGCAGAATTCTCCGAAGGAAGCAACACTGAAAATCCGACCAGAGAAACTGAAAGTAGCTGAAGTGGAAGTATTAAAAGAGATTGGTCCAACACCAATATTCCCTGATATTTATACAGATATGAAAGAAAAAACATTGATTGAAGTTTTGGCTGCGGCAGAATTTCGAAAGAACAACGAAAGAAAACCAGGTCAGAATAAAAAAGAAAGTGAAACTTCTCCATTCGAAACCGGTGTAATGATGTATCCGCCTACAATAAAAATCAATAGGAATCATCAAGATTTCGACGTCGACGCTGATTGGCCCTCAACGGATTTTTGTAAAGAGAATTCTCCAAACTTCCCCGAGAATCTTGAGGCTATATATCCGACGTTCATGCCCTTTGAAAATAAAGGAATCAGGCTGATGGCTCTATTGACGGATATGATAGGAGTTCCGGCCTCCGTCGAGCATGAGCTGCCTTGGCACCCCCCCACCTGCCCGCCGGATAAGGATATCACACTATTCACACAAAAGAAAGTCAAGCCTCAGTTCTCGAGCGAGGTGGCCGGCGTGGGCCCGCTGCGCCGCAAGCTGCACGAGTACGTCGCGGACGGAGACCTCGCCGCCGCGCAGCGCATGCAGGACGCGGAGATCGGACAGAGGATATACGCGGCCATGCAGAAGAAACTAGCGCCGAAATGGATCCTGTACACGTTGTCGTCGCTGTACTGGCGCGTGCGAAGCAACAATATAAACGCTTTACACTGCCTTCTCAACGCCGGCAGGACTGTCGAAAATAAATACAGAGATATAGTGTTGACTTCAGTAGCGTCGATATATCTGGAGATGGGGTACTTCGACGAGGCCTTCACCGTTGCCGAAGAAGCGTTCAGACTGAGTCTGTTTGAGCCAGCAACAAACTTTATACTGGCAGAACTGAATATGATTAATAAACATCGGAAGACGCATTTGATTCACTTGAAGCAAGTTTTAAGAGTAGAACCCTCTTTTATGGGAGGAATCGTTCGGAAACTTTTGATCGGATGGGCTTGTATACTAAAGCAAGTTAACACTGTGAACGAAGTGGAACTCGAGGAGGGTGAGGTTTGTTCTCGGGTCGAGACGGGAACGAACATGGTCTGCGAAAAGGACGGCTCCAACTGTCAAATGTCCAACGTTAAATGCTTTAGTAGCCGTGAACGCGAGAGTGGGGGCGGCGCTATGGTTAGAATGTTAGAGCTAAAAGACGAAAACTCACAACGACCCGATGTCGAACGCATAGAGTCGGATGTGTTCGATCACGTGATAAGGAACATGCCCGCCGAGTCCTCCGATAAGGTGGCCCATTTAAAAAACTACGACGCCATGCTGAGGACCATGGACAAATCATTGAACGTCTGCGGGAAGGATGGATGTTATTCTGAAATCCAACTCGACAATATATTATTAGAAGAAGAGGACTGTTCAAATCAACATTTGCAATTGAGCTATTGGTTGCACGTCAGTTTTAGACAGATGCTAAGCGAAGCCGATCTCGGGCTCGTGCAAGAGATAACAGCGACTCCGCCGGCCGGAAGAAAAGTTCCCGATTGCAGAGCGCCCACTGTACAGGACTTCTTCATCGACCGCATGATAACCGTAGACACGGCCGGTTGGGAACCGGTGTTCAGTCTAATGCACCAGCTCGCCGAGATGTTCAATTTCTACGATTATACGACGCTCGGATCCAAAATCGCCAAATACGTTGAATCTCACCCGAGCTCGTGGTCGGCATTGATGTGGGCGGGGTGGTGGTGCGGGGCGGGGGGCCGCGGGCCGTGCGCCGCGCGCTGCCTGTGCGCCGCGCATGCGCACGCGCCCGCGCACGCACACACGTACGCGCTCTCCGGGCTCGTCGCTCTGCTGCACATGCAATCGAAACAAAAGGACGCTAAAGATATATCGTATCTGGCTTTGTACTCTTCGCCTAAAAGTAAAAATGAAGCGTTTTTGGTGGCCTTGTCTCATACTTTACTGTCGAAGACAGCCTTTTTCATTTGA

Protein

MNYINFLWLFGLCTVHATTIATHWMVTETGLIQPRADSPFIMEHPNDLLAFLNQDTRWDNIHNLYYDLYNRQQIIDQLWLDIEKGTEVTTILTSNQHCVRVGQLNIIDWYTSFLEDGKSKGVPDEDFLLRETDYGDTDVPDCKKISSLTFSMFAFEHLEGLNQRENLSIDPELSLPEQITPIMTVDPFGHWLAAMLRRNNSSWLHYNMASLYWRVKGNAPKAMECSRRAVHYAPRKYKDIALLSMGTILHRSKRTEDAIVVLRAATDHDPTFTYNHFSLANAYAVFGDFNSSLKHFAECLKLNPTFELAVRHKIAVLCHLYVSDTIEELKETLQKLRQELIEYARRESEWLKSQAAFLRTMKHEEEFDYRNIDNNCKKMTNITGLKIKELKLQGDRNSLLQYFLDSPMYNDQWLKEKGVLAIESAGNLQKLVKHIRQNSPKEATLKIRPEKLKVAEVEVLKEIGPTPIFPDIYTDMKEKTLIEVLAAAEFRKNNERKPGQNKKESETSPFETGVMMYPPTIKINRNHQDFDVDADWPSTDFCKENSPNFPENLEAIYPTFMPFENKGIRLMALLTDMIGVPASVEHELPWHPPTCPPDKDITLFTQKKVKPQFSSEVAGVGPLRRKLHEYVADGDLAAAQRMQDAEIGQRIYAAMQKKLAPKWILYTLSSLYWRVRSNNINALHCLLNAGRTVENKYRDIVLTSVASIYLEMGYFDEAFTVAEEAFRLSLFEPATNFILAELNMINKHRKTHLIHLKQVLRVEPSFMGGIVRKLLIGWACILKQVNTVNEVELEEGEVCSRVETGTNMVCEKDGSNCQMSNVKCFSSRERESGGGAMVRMLELKDENSQRPDVERIESDVFDHVIRNMPAESSDKVAHLKNYDAMLRTMDKSLNVCGKDGCYSEIQLDNILLEEEDCSNQHLQLSYWLHVSFRQMLSEADLGLVQEITATPPAGRKVPDCRAPTVQDFFIDRMITVDTAGWEPVFSLMHQLAEMFNFYDYTTLGSKIAKYVESHPSSWSALMWAGWWCGAGGRGPCAARCLCAAHAHAPAHAHTYALSGLVALLHMQSKQKDAKDISYLALYSSPKSKNEAFLVALSHTLLSKTAFFI

Uniprot

A0A2H1WMS3   A0A194Q7K7   A0A194RCF5   A0A212FN99   A0A1Y1NDP2   A0A1W4XEL0   + More
A0A1W4X517   A0A067RM71   A0A2J7R942   A0A0T6BE90   D2A0N1   A0A232ERL5   A0A3L8DVW5   A0A3S1B591   A0A026W3Q5   E2AZ97   A0A195DRF0   A0A158NBF6   A0A195FCT0   A0A1A8P660   A0A1A8LEQ9   A0A1A8PXW8   A0A1A8NLT6   A0A1A8JL94   V4A941   A0A1A7YCY8   A0A1A8HGC3   A0A158RD00   A0A1I9G3H5   A0A1I9G3J8   A0A0K0IU32   A0A1I9G3P3  

Pubmed

26354079    22118469    28004739    24845553    18362917    19820115    + More
28648823    30249741    24508170    20798317    21347285    23254933    17885136   

EMBL

ODYU01009740    SOQ54369.1    KQ459439    KPJ00980.1    KQ460397    KPJ15282.1    + More
AGBW02006772    OWR55193.1    GEZM01005645    JAV96013.1    KK852543    KDR21670.1    NEVH01006721    PNF37345.1    LJIG01001425    KRT85515.1    KQ971338    EFA02534.2    NNAY01002580    OXU21005.1    QOIP01000004    RLU24109.1    RQTK01000404    RUS80218.1    KK107453    EZA50628.1    GL444149    EFN61240.1    KQ980581    KYN15443.1    ADTU01011036    KQ981673    KYN38196.1    HAEG01006468    SBR76810.1    HAEF01005705    SBR43087.1    HAEH01009029    SBR86086.1    HAEI01000027    SBR69859.1    HAED01013178    HAEE01000831    SBR20847.1    KB202237    ESO91575.1    HADX01006150    SBP28382.1    HAEC01014047    SBQ82264.1    UYYF01004820    VDN07175.1    LN856993    CDP98255.1    CDP98253.1    CDP98254.1   

Proteomes

UP000053268    UP000053240    UP000007151    UP000192223    UP000027135    UP000235965    + More
UP000007266    UP000215335    UP000279307    UP000271974    UP000053097    UP000000311    UP000078492    UP000005205    UP000078541    UP000030746    UP000046394    UP000276776    UP000006672   

Pfam

PF13181   TPR_8        + More
PF13176   TPR_7
PF07719   TPR_2

Interpro

IPR013026   TPR-contain_dom        + More
IPR011990   TPR-like_helical_dom_sf       
IPR019734   TPR_repeat       
IPR013105   TPR_2       

SUPFAM

SSF48452   SSF48452       

Gene 3D

1.25.40.10    

ProteinModelPortal

A0A2H1WMS3   A0A194Q7K7   A0A194RCF5   A0A212FN99   A0A1Y1NDP2   A0A1W4XEL0   + More
A0A1W4X517   A0A067RM71   A0A2J7R942   A0A0T6BE90   D2A0N1   A0A232ERL5   A0A3L8DVW5   A0A3S1B591   A0A026W3Q5   E2AZ97   A0A195DRF0   A0A158NBF6   A0A195FCT0   A0A1A8P660   A0A1A8LEQ9   A0A1A8PXW8   A0A1A8NLT6   A0A1A8JL94   V4A941   A0A1A7YCY8   A0A1A8HGC3   A0A158RD00   A0A1I9G3H5   A0A1I9G3J8   A0A0K0IU32   A0A1I9G3P3  

PDB

2HYZ     E-value=0.000212429,     Score=110

KEGG

101740970    no KO assigned | (RefSeq) tetratricopeptide repeat protein 17

GO

GO:0016021   GO:0030041   GO:0015629   GO:0005515   GO:0006355   GO:0005975   GO:0016020   GO:0005524   GO:0006412   GO:0016876   GO:0043039  

SignalP

Position:   1 - 17,         Likelihood:  0.974298

 

 

Length:

1108

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

17.2879299999999

Exp number, first 60 AAs:

17.21455

Total prob of N-in:

0.79770

POSSIBLE N-term signal

sequence

inside

1  -  4

TMhelix

5  -  27

outside

28  -  1108

 

 

Pi

17.94653

Theta

17.334261

Tajima's D

-0.771709

CLR

1.414547

CSRT

0.181340932953352

Interpretation

Uncertain