Gene

KWMTBOMO08025

Pre Gene Modal

BGIBMGA001026

Annotation

PREDICTED:_glutamate_receptor_ionotropic?_delta-2_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr13(+):13030335-13049512      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 3.83

CDS

ATGGCCGGTATCGAGTTGATCATATCTTCAATTTGCAACGCAACAATTTGTAATGCCGTGTATGATAATCCGCTAACAGATGGACATGTGTCACAAAAGCAAACCGAGACTTTACTGTTGGCGAATGAAATAAATGGGAAGCACTTAAAGATCGGCACGTATAATAATTTCCCTTTAAGCTGGATTGAAAGAGACGAAAATGGTACAGTGCAGGCGTACGGCGTGGCGTTTAAAATCATAGACATACTACAGCAAAAGTTTAACTTTACATACGAAATCGTAATACCACACAGGAACTTTGAAATCGGTGGCAGCAAACCTGAGGACTCTTTGATAGGGCTAACGAATACAAGTAAAGTAGACATGATAGCTGCGTTCATACCAAGGCTCGTTAGGTTCCGAAAATTGGTGACGTTCTCAAGAGATTTAGACGAAGGTGTTTGGATGATGATGCTTAGACGGCCAAAGGAATCCGCCGCTGGCTCTGGTCTTTTAGCGCCCTTTAATAACTTTGTATGGTACGTAACTCTTGCTTCGGTACTGTGTTATGGGCCGTGCATATGTTTCCTGACTCACGTGAGGTCAAAACTAATTAAGAATGAAGAACGGCCGCTGCGACTTTCGCCGAGTTTCTGGTTCGTGTATAGCGCTTTTATAAAGCAAAGCACAAACTTAGCTCCCGAAGCTAACACAACACGTGTTTTGTTCGCAACGTGGTGGCTATTCATTATATTGCTCTCAGCGTTTTACACGGCAAACTTGACTGCTTTCCTGACATTGTCCAAGTTCACACTAGACATTGAGACTCCGGAGGATTTGTATAAGAAAAATTACCGTTGGGTTTCTGTTGAGGGTGGTTCCGTTCAATACACTGTTAAAACACAGGACGAAGACCTTTACTATTTAAACAAAATGGTGACCAGTGGCCGAGCAGAATTTCGTACGTTGTCGCCAGACCAGGAGTATCTCCCAATTGTGAAAGCTGGGGCTGTTCTCGTCAAGGAGATGATTTCTCTAGAACATCTCATGTATGGGGACTACCTGACGAAGACTCGTGAAGGCGTCGAAGAGGCTAAACGATGCACTTACGTTGTGGCGCCCAAGCCTTTCATGAAAAAGCCCAGAGCGTTCGTGTATCCTGTTGGCAGTAAGCTGAAGAGCCTTTTTGATCCTACTCTTGCATACATATTACAATCGGGTATTATAGATTATCTTGAACACAAAGATTTGCCGTCCACCACGATATGTCCTCTGGATTTGCAGTCCAAAGACAGGCAGTTGACCAATAGTCACCTCATGATGACTTATTACATAATGTGCGTTGGCCTCGCCTCGGGTTTAGCTGTTTTTGTAGTGGAGATATTAGTCAAACGATACATCAATATTAAGATAAAACCTATCGATAAAGTGAAATTGAAGAAGTTCAAACGGAGTAAGCGCTCCCCACGTTACGACGACAGTGGACCGCCGCCATATGAATCCTTGTTTGTTAAACCGAAGTTCAAAGACTCCGAAAAACGTTGGAAGATGATCAACGGCAGGGAATATTACGTCTATGAAGATGCCCGAGGGGGCACCAGGCTTGTTCCCGTGAGGACTCCATCGGCTTTCTTAAATGATGACTCTGGCTTTGCTGACATACATGGATGA

Protein

MAGIELIISSICNATICNAVYDNPLTDGHVSQKQTETLLLANEINGKHLKIGTYNNFPLSWIERDENGTVQAYGVAFKIIDILQQKFNFTYEIVIPHRNFEIGGSKPEDSLIGLTNTSKVDMIAAFIPRLVRFRKLVTFSRDLDEGVWMMMLRRPKESAAGSGLLAPFNNFVWYVTLASVLCYGPCICFLTHVRSKLIKNEERPLRLSPSFWFVYSAFIKQSTNLAPEANTTRVLFATWWLFIILLSAFYTANLTAFLTLSKFTLDIETPEDLYKKNYRWVSVEGGSVQYTVKTQDEDLYYLNKMVTSGRAEFRTLSPDQEYLPIVKAGAVLVKEMISLEHLMYGDYLTKTREGVEEAKRCTYVVAPKPFMKKPRAFVYPVGSKLKSLFDPTLAYILQSGIIDYLEHKDLPSTTICPLDLQSKDRQLTNSHLMMTYYIMCVGLASGLAVFVVEILVKRYINIKIKPIDKVKLKKFKRSKRSPRYDDSGPPPYESLFVKPKFKDSEKRWKMINGREYYVYEDARGGTRLVPVRTPSAFLNDDSGFADIHG

Uniprot

H9IUU6   A0A3G6V6P6   A0A0F7QHP7   A0A194QC15   A0A1B3P5G3   A0A140G9H7   + More
A0A345BF40   A0A146JYZ2   A0A0U3BFA4   A0A076E9D5   A0A0K8TUX1   A0A076E9E3   A0A2K8GKZ9   A0A386H956   A0A223HCY0   A0A3S2LA01   A0A1Q1PP68   H9A5S5   A0A223HDB6   E5FIB2   A0A2H1VA48   A0A1B3B6Z5   U5PZQ9   A0A0B4ZWK3   A0A194RCE5   A0A3Q8HDG9   A0A2K8GKY4   A0A2A4J6F4   B4KV54   B3M3J3   Q9VW78   A0A0J9RZR7   B4IA41   B4LFY5   A0A1W4W7R6   B4IYS9   B3NE31   B4PFT4   B4MKI2   Q2M090   A0A3B0JL64   B4GRY9   A0A068FBN9   A0A0M4EAZ5   A0A1A9XC85   A0A0L0CKJ5   A0A1A9VHR2   A0A1S4FD88   A0A182GSE3   A0A336K8J6   A0A1B0CLI0   A0A2P8ZI36   A0A182GRK7   A0A2P1JHH3   A0A2U9NK99   A0A182N2Z0   A0A1I8N5B2   A0A182RKF8   A0A1I8NWC1   A0A182TYZ9   A0A1B0G8W3   W8BPH8   A0A0K8UQ12   A0A182JQY4   A0A348AZZ2   A0A0G2UKD7   A0A182XJM9   A0A0C5DAS1   A0A1B3B7D1   A0A310S9V3   A0A182YBM8   A0A182NZY1   B4QRG1   A0A2M4APY3   A0A182V953   W5JH25   A0A0U5A7M1   A0A182HHQ0   A0A182W227   A0A067RKE4   A0A182FTQ3   A0A0M5KFI4   A0A2P0ZPL5   A0A0S3J2L2   B0XJ31   R9PSQ3   Q176J1   A0A182MCN5   D2A190   A0A2J7R359   A0A3L9LU07   A0A1S4H944   Q7PZL3   A0A3L8E5T9   A0A0L7R8U2   A0A154PIW4   B0WFT4   A0A2S2NIV4   A0A2S2QCS6  

Pubmed

19121390    30465940    25803580    26354079    27538507    27004525    + More
29727827    26657286    24998398    26017144    28736530    28150741    22363688    21091811    23894529    17994087    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    21220098    26109357    26109356    22936249    17550304    15632085    25880816    26108605    26483478    29403074    25315136    24495485    30026095    25665775    27171401    25244985    20920257    23761445    26760975    24845553    26265180    26626891    23517120    17510324    18362917    19820115    12364791    30249741   

EMBL

BABH01000472    BABH01000473    MH193968    AZB49414.1    LC017795    BAR64809.1    + More
KQ459439    KPJ00971.1    KX655901    AOG12850.1    KU702629    AMM70656.1    MG820693    AXF48864.1    KX084512    GEDO01000007    ARO76467.1    JAP88619.1    KP975099    ALT31618.1    KF487716    AII01114.1    GCVX01000142    JAI18088.1    KF487726    AII01124.1    KX585408    ARO70301.1    MG546649    AYD42272.1    KY283577    AST36237.1    RSAL01000074    RVE48972.1    KY325457    AQM73618.1    JN836725    AFC91765.1    KY283706    AST36365.1    HM562976    ADR64687.1    ODYU01001475    SOQ37715.1    KT588077    AOE47987.1    KC907740    AGY49253.1    KJ542756    AJD81640.1    KQ460397    KPJ15272.1    MF625614    AXY83441.1    KX585395    ARO70288.1    NWSH01002836    PCG67459.1    CH933809    EDW19394.2    CH902618    EDV39254.1    AE014296    BT022767    BT022775    HQ600589    AAF49071.1    AAY55183.1    AAY55191.1    ADU79033.1    CM002912    KMZ00685.1    CH480826    EDW44154.1    CH940647    EDW70384.1    CH916366    EDV96616.1    CH954178    EDV52455.1    CM000159    EDW95231.1    CH963847    EDW72688.1    CH379069    EAL31045.1    OUUW01000002    SPP76120.1    CH479188    EDW40524.1    KJ702127    AID61281.1    CP012525    ALC44516.1    JRES01000275    KNC32757.1    JXUM01084367    JXUM01084368    JXUM01084369    KQ563433    KXJ73839.1    UFQS01000174    UFQT01000174    SSX00737.1    SSX21117.1    AJWK01017289    PYGN01000050    PSN56156.1    JXUM01016354    JXUM01016355    JXUM01016356    KQ560456    KXJ82326.1    MG766214    AVN97884.1    MF385156    AWT23327.1    CCAG010010272    GAMC01003485    JAC03071.1    GDHF01023706    JAI28608.1    FX985983    BBD43518.1    KP743672    AKI28988.1    KP296779    AJO62243.1    KU291866    AOE48116.1    GGOB01000052    MCH29448.1    CM000363    EDX11174.1    GGFK01009471    MBW42792.1    ADMH02001207    ETN63667.1    FX982935    BAU20261.1    APCN01002432    KK852417    KDR24341.1    KP843210    ALD51347.1    KY817092    AVH87308.1    KT381534    ALR72540.1    DS233427    EDS29926.1    GABX01000011    JAA74508.1    CH477386    EAT42092.1    AXCM01000173    KQ971338    EFA01567.1    NEVH01007822    PNF35281.1    KB466529    RLZ02255.1    AAAB01008986    EAA00639.3    QOIP01000001    RLU27645.1    KQ414631    KOC67248.1    KQ434931    KZC11826.1    DS231920    EDS26428.1    GGMR01004087    MBY16706.1    GGMS01006345    MBY75548.1   

Proteomes

UP000005204    UP000053268    UP000283053    UP000053240    UP000218220    UP000009192    + More
UP000007801    UP000000803    UP000001292    UP000008792    UP000192221    UP000001070    UP000008711    UP000002282    UP000007798    UP000001819    UP000268350    UP000008744    UP000092553    UP000092443    UP000037069    UP000078200    UP000069940    UP000249989    UP000092461    UP000245037    UP000075884    UP000095301    UP000075900    UP000095300    UP000075902    UP000092444    UP000075881    UP000076407    UP000076408    UP000075885    UP000000304    UP000075903    UP000000673    UP000075840    UP000075920    UP000027135    UP000069272    UP000002320    UP000008820    UP000075883    UP000007266    UP000235965    UP000007062    UP000279307    UP000053825    UP000076502   

PRIDE

H9IUU6    Q9VW78   

Pfam

PF00060   Lig_chan        + More
PF10613   Lig_chan-Glu_bd
PF07177   Neuralized

Interpro

IPR001320   Iontro_rcpt        + More
IPR001508   Iono_rcpt_met       
IPR019594   Glu/Gly-bd       
IPR006573   NHR_dom       
IPR037962   Neuralized       
IPR013320   ConA-like_dom_sf       

SUPFAM

SSF49899   SSF49899       

ProteinModelPortal

H9IUU6   A0A3G6V6P6   A0A0F7QHP7   A0A194QC15   A0A1B3P5G3   A0A140G9H7   + More
A0A345BF40   A0A146JYZ2   A0A0U3BFA4   A0A076E9D5   A0A0K8TUX1   A0A076E9E3   A0A2K8GKZ9   A0A386H956   A0A223HCY0   A0A3S2LA01   A0A1Q1PP68   H9A5S5   A0A223HDB6   E5FIB2   A0A2H1VA48   A0A1B3B6Z5   U5PZQ9   A0A0B4ZWK3   A0A194RCE5   A0A3Q8HDG9   A0A2K8GKY4   A0A2A4J6F4   B4KV54   B3M3J3   Q9VW78   A0A0J9RZR7   B4IA41   B4LFY5   A0A1W4W7R6   B4IYS9   B3NE31   B4PFT4   B4MKI2   Q2M090   A0A3B0JL64   B4GRY9   A0A068FBN9   A0A0M4EAZ5   A0A1A9XC85   A0A0L0CKJ5   A0A1A9VHR2   A0A1S4FD88   A0A182GSE3   A0A336K8J6   A0A1B0CLI0   A0A2P8ZI36   A0A182GRK7   A0A2P1JHH3   A0A2U9NK99   A0A182N2Z0   A0A1I8N5B2   A0A182RKF8   A0A1I8NWC1   A0A182TYZ9   A0A1B0G8W3   W8BPH8   A0A0K8UQ12   A0A182JQY4   A0A348AZZ2   A0A0G2UKD7   A0A182XJM9   A0A0C5DAS1   A0A1B3B7D1   A0A310S9V3   A0A182YBM8   A0A182NZY1   B4QRG1   A0A2M4APY3   A0A182V953   W5JH25   A0A0U5A7M1   A0A182HHQ0   A0A182W227   A0A067RKE4   A0A182FTQ3   A0A0M5KFI4   A0A2P0ZPL5   A0A0S3J2L2   B0XJ31   R9PSQ3   Q176J1   A0A182MCN5   D2A190   A0A2J7R359   A0A3L9LU07   A0A1S4H944   Q7PZL3   A0A3L8E5T9   A0A0L7R8U2   A0A154PIW4   B0WFT4   A0A2S2NIV4   A0A2S2QCS6  

PDB

4U5D     E-value=9.51752e-16,     Score=205

KEGG

101741250    K05313 glutamate receptor, ionotropic, invertebrate | (RefSeq) glutamate receptor ionotropic, delta-

GO

GO:0016021   GO:0004970   GO:0019226   GO:0033039   GO:0071683   GO:0004984   GO:0071230   GO:0043235   GO:1902075   GO:0005272   GO:0050911   GO:0043200   GO:0009593   GO:0015276   GO:0005886   GO:0032281   GO:0004971   GO:0016020   GO:0008233   GO:0005524   GO:0006412   GO:0016876   GO:0043039  

PANTHER

PTHR12429  

Length:

549

Number of predicted TMHs:

3

Exp number of AAs in TMHs:

67.6124800000001

Exp number, first 60 AAs:

0.02265

Total prob of N-in:

0.00510

outside

1  -  170

TMhelix

171  -  193

inside

194  -  234

TMhelix

235  -  257

outside

258  -  433

TMhelix

434  -  456

inside

457  -  549

 

 

Pi

1.413937

Theta

5.446336

Tajima's D

-2.216823

CLR

184.632498

CSRT

0.00409979501024949

Interpretation

Possibly Positive selection