Gene

KWMTBOMO08019

Annotation

T18197_reverse_transcriptase-like_protein_-_silkworm

Location

Bomo_Chr13(+):12691851-12694293      View in EpiBrowser

Full name

Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2       + More
Retrovirus-related Pol polyprotein from type-2 retrotransposable element R2DM      

Alternative Name

Retrovirus-related Pol polyprotein from type I retrotransposable element R2
Retrovirus-related Pol polyprotein from type II retrotransposable element R2DM

Location in the cell

Mitochondrial   Reliability : 2.195

CDS

ATGTCGCCCGATGCCGCTCGGGTTCTCTCCGAACTCCTTGAGGGTGCGGGGAGAAGACGAGCGTGCAGGGCTATGAGACCCAAGACTGCAGGGCGGCGAAACGATTTGCACGATGATCGGACAGCTAGTGCCCACAAAACCAGTAGACAAAAGCGCAGGGCAGAGTACGCGCGTGTGCAGGAACTGTACAAGAAGTGTCGCAGCAGAGCAGCAGCTGAGGTGATCGATGGCGCGTGTGGGGGTGTCGGACACTCGCTCGAGGAGATGGAGACCTATTGGCGACCTATCCTCGAGAGAGTGTCCGATGCACCTGGGCCTACACCGGAAGCTCTTCACGCCCTAGGGCGTGCGGAGTGGCACGGGGGCAATAGCGACTACACCCAGCTGTGGAAGCCGATCTCGGTGGAAGAGATCAAGGCCTCCCGCTTTGACTGGCGAACTTCGCCGGGCCCGGACGGTATACGTTCGGGTCAGTGGCGTGCGGTTCCTGTGCACTTGAAGGCGGAAATGTTCAATGCATGGATGGCACGAGGCGAAATACCCGAAATTCTACGGCAGTGCCGAACCGTCTTTGTACCTAAGGTGGAGAGACCAGGTGGACCGGGGGAATATCGACCGATCTCGATCGCGTCGATTCCCCTGAGACACTTTCACTCCATCTTGGCCCGGAGGCTGTTGGCTTGCTGCCCCCCTGATGCACGACAGCGCGGATTTATCTGCGCCGACGGTACGCTGGAGAATTCCGCAGTACTGGACGCGGTGCTTGGGGATAGCAGGAAGAAGCTGCGGGAATGTCACGTGGCGGTGCTAGACTTCGCCAAGGCATTTGACACAGTGTCTCACGAGGCACTTGTCGAATTGCTGAGGTTGAGGGGCATGCCCGAACAGTTCTGCGGCTACATTGCTCACCTATACGATACGGCGTCCACCACCTTAGCCGTGAACAATGAAATGAGCAGCCCTGTAAAAGTGGGACGAGGGGTTCGTCAAGGGGACCCTCTGTCGCCGATACTCTTCAACGTGGTGATGGACCTCATCCTGGCTTCCCTGCCGGAGAGGGTCGGGTATAGGTTGGAGATGGAACTAGTGTCCGCTCTGGCCTATGCTGACGACCTAGTCCTGCTTGCGGGGTCGAAGGTAGGGATGCAGGAGTCCATCTCTGCTGTGGACTGTGTCGGTAGGCAGATGGGCCTACGCCTGAATTGCAGGAAAAGCGCGGTTCTGTCTATGATACCGGATGGCCACCGCAAGAAGCATCACTACCTGACTGAGCGAACCTTCAATATTGGAGGTAAGCCGCTCAGGCAGGTGAGTTGTGTTGAGCGGTGGCGATATCTTGGTGTCGATTTTGAGGCCTCTGGATGCGTGACATTAGAGCATAGTATCAGTAGTGCTCTGAATAACATCTCAAGGGCACCTCTCAAACCCCAACAGAGGTTGGAGATTTTGAGAGCTCATCTGATTCCGAGATTCCAGCACGGTTTTGTGCTTGGAAACATCTCGGATGACCGATTGAGAATGCTCGATGTCCAAATCCGGAAAGCAGTCGGACAGTGGCTAAGGCTACCGGCGGATGTGCCCAAGGCATATTATCACGCCGCAGTTCAGGACGGCGGCTTAGCGATCCCATCGGTGCGAGCGACCATCCCGGACCTCATTGTGAGGCGTTTCGGGGGGCTCGACTCGTCACCATGGTCAGTGGCAAGAGCCGCCGCCAAATCTGATAAGATTCGTGGTCTCGGGCCAGCGATCGTTTGA

Protein

MSPDAARVLSELLEGAGRRRACRAMRPKTAGRRNDLHDDRTASAHKTSRQKRRAEYARVQELYKKCRSRAAAEVIDGACGGVGHSLEEMETYWRPILERVSDAPGPTPEALHALGRAEWHGGNSDYTQLWKPISVEEIKASRFDWRTSPGPDGIRSGQWRAVPVHLKAEMFNAWMARGEIPEILRQCRTVFVPKVERPGGPGEYRPISIASIPLRHFHSILARRLLACCPPDARQRGFICADGTLENSAVLDAVLGDSRKKLRECHVAVLDFAKAFDTVSHEALVELLRLRGMPEQFCGYIAHLYDTASTTLAVNNEMSSPVKVGRGVRQGDPLSPILFNVVMDLILASLPERVGYRLEMELVSALAYADDLVLLAGSKVGMQESISAVDCVGRQMGLRLNCRKSAVLSMIPDGHRKKHHYLTERTFNIGGKPLRQVSCVERWRYLGVDFEASGCVTLEHSISSALNNISRAPLKPQQRLEILRAHLIPRFQHGFVLGNISDDRLRMLDVQIRKAVGQWLRLPADVPKAYYHAAVQDGGLAIPSVRATIPDLIVRRFGGLDSSPWSVARAAAKSDKIRGLGPAIV

Catalytic Activity

a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1)

Keywords

Complete proteome   Endonuclease   Hydrolase   Metal-binding   Nuclease   Nucleotidyltransferase   Reference proteome   RNA-directed DNA polymerase   Transferase   Transposable element   Zinc   Zinc-finger   Aspartyl protease   Protease  

Feature

chain  Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2

Uniprot

V9H052   Q8MY64   Q5K671   A0A023EX97   A0A0C9QX33   A0A0J7KIZ7   + More
K7JR53   A0A0J7KIJ3   A0A336N1I0   A0A2S2Q7J7   A0A023EX96   A0A023EXT5   Q03278   K7JCX5   A0A139W9T2   B8Y0J4   A0A1A9VZG3   K7JWL4   K7JX42   A0A0K8S7M2   A0A0A9VQ34   A0A146KWA5   Q76IP1   P16423   A0A224XHH5   A0A1Z5LEY2   A0A293LU33   A0A293LGQ3   A0A131YXA3   A0A293LBM6   A0A077B0I4   Q76IP0   A0A131Z2I9   A0A1E1X218   A0A293M998   A0A0R4WRV8   O44323   I7A3V0   I7AEJ4   K7JWP8   K7JPM5   A0A1E1XIZ0   L7M1A0   C6F3W3   Q03279   O44319   A0A2R7WW67   O44316   A0A1E1X8Y7   A0A0J7N6L9   A0A0K8TDX3   Q76IN9   K7JYZ8   A0A096XIE1   J9M3R0   A0A1Z5L9B1   A0A183A234   I7BCK2   A0A1E1X328   I7B001   A0A0J7KJU5   A0A3R7C400   A0A3R7CLP2   A0A3P6R8S6   A0A3R7HBS5   A0A3B5M253   A0A183NB95   A0A075A624   A0A3Q2Y7G9   W5NKD0   Q4QQD8   A0A146Q2A4   A0A146QWB2   A0A146U0K0   A0A146RSK6   A0A3B4CI67   A0A3B1JJF5   A0A1V1H6Q5   A0A183M8D5   A0A2Z5WP53   A0A3P8ZIK0   A0A3B4CL88   A0A146T677   A0A3P7MZ95   Q76IN8   W5M4C0   A0A3Q2YQL5   A0A085MQH5  

Pubmed

2439905    14999096    25474469    20075255    8383793    18362917    + More
19820115    19350401    25401762    26823975    12949131    1690812    28528879    26830274    28503490    9515960    10331276    22564473    25576852    9927458    15939396    25329095    27662593    25069045    24929829   

EMBL

M16558    AAB59214.1    AB076841    BAC01114.1    AF436853    AAQ04479.1    + More
GBBI01004849    JAC13863.1    GBYB01008309    JAG78076.1    LBMM01006940    KMQ90176.1    AAZX01002322    LBMM01007077    KMQ90064.1    UFQS01003262    UFQT01003262    SSX15424.1    SSX34793.1    GGMS01004512    MBY73715.1    GBBI01004905    JAC13807.1    GBBI01004906    JAC13806.1    L00950    AAZX01010802    AAZX01015897    KQ971997    KYB24671.1    FJ461304    ACJ71597.1    AAZX01023287    AAZX01023288    GBRD01016678    JAG49149.1    GBHO01045037    GBHO01045036    JAF98566.1    JAF98567.1    GDHC01017848    JAQ00781.1    AB097121    BAC82589.1    X51967    GFTR01008394    JAW08032.1    GFJQ02001120    JAW05850.1    GFWV01007503    MAA32233.1    GFWV01002964    MAA27694.1    GEDV01005279    JAP83278.1    GFWV01001114    MAA25844.1    KJ958674    AIL01110.1    AB097122    BAC82590.1    GEDV01003881    JAP84676.1    GFAC01005869    JAT93319.1    GFWV01012635    MAA37364.1    JQ082370    AFM44926.1    AF015819    AAC34906.1    JN937619    AFO19998.1    JN937617    AFO19996.1    AAZX01010801    AAZX01015898    AAZX01024756    AAZX01024918    GFAC01000014    JAT99174.1    GACK01007407    JAA57627.1    EU854578    ACJ46647.1    L00951    AF015815    AAC34903.1    KK855758    PTY23787.1    AF015685    AAB94032.1    GFAC01003453    JAT95735.1    LBMM01009160    KMQ88340.1    GBRD01002048    JAG63773.1    AB097123    BAC82591.1    AAZX01010936    KF925878    AHN53448.1    ABLF02003433    GFJQ02003336    JAW03634.1    UZAN01004728    VDP32110.1    JN937618    AFO19997.1    GFAC01005513    JAT93675.1    JN937616    AFO19995.1    LBMM01006509    KMQ90547.1    NIRI01002286    RJW62659.1    NIRI01000035    RJW73594.1    UYRU01007376    VDK41074.1    NIRI01000032    RJW73696.1    UZAI01021487    VDP55649.1    KL596651    KER31070.1    AHAT01035183    BN000800    CAJ00246.1    GCES01136315    JAQ50007.1    GCES01125908    JAQ60414.1    GCES01088356    JAQ97966.1    GCES01115013    JAQ71309.1    LC155026    BAX24488.1    UZAI01007624    VDO99720.1    LC349444    BBC20536.1    GCES01097919    JAQ88403.1    UYRU01077406    VDN28088.1    AB097124    BAC82592.1    AHAT01039632    KL367913    KFD59471.1   

Proteomes

UP000036403    UP000002358    UP000007266    UP000091820    UP000007819    UP000050740    + More
UP000261380    UP000050790    UP000277204    UP000264820    UP000018468    UP000261440    UP000018467    UP000265140   

PRIDE

V9H052    Q8MY64    Q5K671    Q03278    P16423   

Pfam

PF00078   RVT_1        + More
PF00096   zf-C2H2
PF08356   EF_assoc_2
PF08355   EF_assoc_1
PF00071   Ras
PF13202   EF-hand_5
PF00249   Myb_DNA-binding

Interpro

IPR013087   Znf_C2H2_type        + More
IPR000477   RT_dom       
IPR036236   Znf_C2H2_sf       
IPR001005   SANT/Myb       
IPR013567   EF_hand_assoc_2       
IPR018247   EF_Hand_1_Ca_BS       
IPR020860   MIRO_dom       
IPR013566   EF_hand_assoc_1       
IPR027417   P-loop_NTPase       
IPR001806   Small_GTPase       
IPR011992   EF-hand-dom_pair       
IPR002048   EF_hand_dom       
IPR017930   Myb_dom       

SUPFAM

SSF57667   SSF57667        + More
SSF52540   SSF52540       
SSF47473   SSF47473       

CDD

cd00167  SANT

ProteinModelPortal

V9H052   Q8MY64   Q5K671   A0A023EX97   A0A0C9QX33   A0A0J7KIZ7   + More
K7JR53   A0A0J7KIJ3   A0A336N1I0   A0A2S2Q7J7   A0A023EX96   A0A023EXT5   Q03278   K7JCX5   A0A139W9T2   B8Y0J4   A0A1A9VZG3   K7JWL4   K7JX42   A0A0K8S7M2   A0A0A9VQ34   A0A146KWA5   Q76IP1   P16423   A0A224XHH5   A0A1Z5LEY2   A0A293LU33   A0A293LGQ3   A0A131YXA3   A0A293LBM6   A0A077B0I4   Q76IP0   A0A131Z2I9   A0A1E1X218   A0A293M998   A0A0R4WRV8   O44323   I7A3V0   I7AEJ4   K7JWP8   K7JPM5   A0A1E1XIZ0   L7M1A0   C6F3W3   Q03279   O44319   A0A2R7WW67   O44316   A0A1E1X8Y7   A0A0J7N6L9   A0A0K8TDX3   Q76IN9   K7JYZ8   A0A096XIE1   J9M3R0   A0A1Z5L9B1   A0A183A234   I7BCK2   A0A1E1X328   I7B001   A0A0J7KJU5   A0A3R7C400   A0A3R7CLP2   A0A3P6R8S6   A0A3R7HBS5   A0A3B5M253   A0A183NB95   A0A075A624   A0A3Q2Y7G9   W5NKD0   Q4QQD8   A0A146Q2A4   A0A146QWB2   A0A146U0K0   A0A146RSK6   A0A3B4CI67   A0A3B1JJF5   A0A1V1H6Q5   A0A183M8D5   A0A2Z5WP53   A0A3P8ZIK0   A0A3B4CL88   A0A146T677   A0A3P7MZ95   Q76IN8   W5M4C0   A0A3Q2YQL5   A0A085MQH5  

PDB

6AR3     E-value=0.0405922,     Score=88

KEGG

102466437    no KO assigned | (RefSeq) Mir3342, bmo-mir-3342; microRNA 3342

GO

GO:0003964   GO:0003676   GO:0004519   GO:0046872   GO:0004190   GO:0016021   GO:0003924   GO:0005509   GO:0005525  

Length:

585

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0036

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00051

outside

1  -  585

 

 

Pi

0

Theta

0

Tajima's D

0

CLR

12.249172

CSRT

0

Interpretation

Uncertain