SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO08015
Annotation
PREDICTED:_uncharacterized_protein_LOC105841315_[Bombyx_mori]
Location in the cell
Mitochondrial   Reliability : 2.25 Nuclear   Reliability : 1.793
 

Sequence

CDS
ATGAATCCACTTGAATCTTCACTGGCTGAGATGTCAGAGCTGTTTAATGCACGTATGGCGAAGTTCGAAGCCCAGCTCAACAAGTCTCCAGAACTATCAACCACATCATCAAGTTTGGCATTGGAATTTTCGTCATTTCGGGCATTCATTACTGAGGCACTTAATAACTTGCAACAGCAGGTGGAGATGCTCGCGCGCATGCAGGATAATACAGAGACTCGCAGCCGTAGAAAAATGTTGATCATTCACGGAGTAGCTGAGACTAAGGGTGAGCAAATTGAACAGGTATTGTCTAATTTCATAGGCAGTCATCTTGCTTTGGCCGAGTTCTCCTCAGCTGATATTAGAAGATGTCACCGTATGAATAGATTGTCAACATCCGAAGGCTCTCGTCCCATACTGATAAAATTCCAAACGTATGAAATGCGCAGTCAAGTTTGGTTTTCTAAAACAAAACTAAAGGGTACCGGCTTTACTATTTCGGAGTTTCTGACGAAAGCGCGGCACGACATTTTCATGGCTGCACGGAGTAGATTCGGCATGAAGAAGGTCTGGACCAAGGATGGCTGTGTCTACATTTTGGGAGCGGATGGCATCAAACATCGCGTCGTTACACATCGAGATCTTAATCATCTTCAAAAGAACACATCGGAGGCAGTCCCTGAGGTTGATGCTCATAAGCGTGCTGTTACAAAACCGGCTGTGGTAAAGGCAAAGCGCGCTGCTGCTAGAAAGTGA
Protein
MNPLESSLAEMSELFNARMAKFEAQLNKSPELSTTSSSLALEFSSFRAFITEALNNLQQQVEMLARMQDNTETRSRRKMLIIHGVAETKGEQIEQVLSNFIGSHLALAEFSSADIRRCHRMNRLSTSEGSRPILIKFQTYEMRSQVWFSKTKLKGTGFTISEFLTKARHDIFMAARSRFGMKKVWTKDGCVYILGADGIKHRVVTHRDLNHLQKNTSEAVPEVDAHKRAVTKPAVVKAKRAAARK

Summary

EMBL
NWSH01004248    PCG65306.1    NWSH01000800    PCG74117.1    NWSH01000964    PCG73374.1    + More
KZ150737    PZC70349.1    NWSH01001639    PCG70611.1    KZ149916    PZC77943.1    ODYU01006869    SOQ49099.1    JTDY01007405    KOB65227.1    JTDY01003374    KOB69654.1    JTDY01009601    KOB63242.1    JTDY01010801    JTDY01009435    KOB57999.1    KOB63512.1    ODYU01012456    SOQ58773.1    BABH01019446    BABH01019447    BABH01019448    BABH01019449    BABH01019450    JTDY01005020    KOB67468.1    JTDY01015832    KOB51930.1    JTDY01001444    KOB73845.1    JTDY01009052    KOB64154.1    ODYU01003266    SOQ41795.1    JTDY01004770    KOB67785.1    JTDY01016995    KOB51870.1    JTDY01002460    KOB71369.1    KOB73846.1    GAIX01004118    JAA88442.1    ODYU01005692    SOQ46801.1    JTDY01004617    KOB67938.1    KZ150731    PZC70355.1    NWSH01000709    PCG74665.1    NWSH01002122    PCG69097.1    JTDY01004162    KOB68510.1    KZ150113    PZC73314.1    JTDY01004815    JTDY01001265    KOB67717.1    KOB74342.1    JTDY01000235    KOB78128.1    NWSH01001172    PCG72268.1    NWSH01000695    PCG74738.1    NWSH01002863    PCG67420.1    NWSH01000981    PCG73266.1    NWSH01000574    PCG75564.1    KZ149998    PZC75357.1    NWSH01000512    PCG75926.1    NWSH01000281    PCG77797.1    NWSH01001465    PCG71162.1    PCG71163.1    NWSH01008089    PCG62701.1    KZ150083    PZC73827.1    RSAL01001827    RVE40669.1    JTDY01000521    KOB76815.1    JTDY01000147    KOB78598.1    NWSH01004711    PCG64730.1   
Pfam
PF01582   TIR        + More
PF00027   cNMP_binding
PF14529   Exo_endo_phos_2
Interpro
IPR004244   Transposase_22        + More
IPR035897   Toll_tir_struct_dom_sf       
IPR000157   TIR_dom       
IPR000595   cNMP-bd_dom       
IPR014710   RmlC-like_jellyroll       
IPR018490   cNMP-bd-like       
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
SUPFAM
SSF52200   SSF52200        + More
SSF51206   SSF51206       
SSF56219   SSF56219       
Gene 3D

Ontologies

Topology

Length:
245
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00690999999999999
Exp number, first 60 AAs:
0.00183
Total prob of N-in:
0.02409
outside
1  -  245
 
 

Population Genetic Test Statistics

Pi
222.705912
Theta
146.141454
Tajima's D
1.749062
CLR
0
CSRT
0.84040797960102
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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