Silkworm Genome Informatics Database

Gene

KWMTBOMO08008

Pre Gene Modal

BGIBMGA001017

Annotation

PREDICTED:_uncharacterized_protein_LOC106713486_[Papilio_machaon]

Location

Bomo_Chr13(+):12201404-12214408 View in EpiBrowser

Location in the cell

Cytoplasmic Reliability : 1.665 Nuclear Reliability : 2.249

CDS

ATGCCTCTGTGTGAAGCGCCACGTCTAGAGCTCGGAAGTGCGCCACAAACTCCTAGTGTCGTACCGTCGCCGTCTTCATCAGAAATATCCAGTGCAAGTTCGCCAGAGCCTCCGAATGTTCGGACCACCTCTTTATTTAGGGCACTTGCTATGCCCCTACCGGAACCTGAACAGCCTCCAGGTCAGGAAGACCTGGAGCGACGTTTACCTGGTTACCGACGTATCGTCATACCCCGAGAACTAACCTTGATAGAACTCTTAAAACAATCCAGTGGTGTGAATTCAGATGAAGAAGTTCTCAGGATTAGGGAGGCCAAGCTTCGCGTCATAGCCGAAAGAGTTGGCCTGAGACGACTACATGTCTTAGCGCCCAGGTTGCGTTCGTTAATTTTGGACGGCAGTGCACTTTCCTCTTTAAGAGATCTTGGGATCGGCCTGGTTCATCTTAAGGTACTAAGCGTAAACCGTTGTGGTTTGACTAGCTTAGACGGAGTATGGGGCTTGGGAGCTCTTCGTGAACTAAATGCGGCCGGGAATCGTCTACACGATTTACAACCGTTGGGTGCATTACAGAAACTTCACACTTTAAATATGGCTGATAATCCAATAGTGGATTCTACCCGTCTATGGACTTTGGGTGTCTGTGGGTCACTTCGACGATTAACCCTACAGGGAACTCCAGTATCTGAATGTCCACAATATCGTCCCAGAGTAGCCGCGGTGTTGCCGATGCTAGTTTATCTGGATGAAAGGCCTTTACATAGAGATATCGAATACGATTCAGACGGAATATTTGGACCAGCGTCATCATCATCCGACTCAGAAGAGAGTGACGCGAGTGGTGGAAATGATTTATTGGAAACGTCACACCTGCCAAATCGGACATCAGACACTGCACCGAAAATTTTTAATAACCTTCAACCAGAATCTAGTCCTGAGAAAGCGTCCAGTTCGGTTGAATCGGACGCAGTACCTAATCATTTGCTGCGTCGAAGACCAGCTACCACTGAAGGAGCCGGTGCAAGATCTCGGACAATCCTCGAGAATCGACCAAAAACAGCTACTGATCGACCAAGTTTTGATGCACCAACCAAACTAGAGATACTCAACACTCTCATGGATAAAGAATGGAGATGCAGTGGCAGTAAATTGACATCTCACGGTGCGGTTTGCGGAAATTTGGCGAGATCTTTGCGGCGTTTAAGTGCGAATTCCTCCAAATCATTTGAAATCGAGAAGGAGATAGTGGAAGAAACGATGGAAGAAGCCAGTCGAGCTATAGCCGCAGAGATCCCACGGGCTCCCTGCTTAGAAGACTGGATGAAATTTAAAGAACAGACTGGAATCGAAATAGATATTGATTTCAACGAGAGACTGAGAGACGTAGATCCTCTGAAAGCTATAGAGCGTCTAGAACAAATTGAAAGAGAAACAATTCAAAGACTAGACCATGATCAGAACGGGAGAGAACTTAATAATGCTACAGGTGTTAATTTACCGAATGCAGCAGCTTCGTTTGCAAGCTGTACCATGTCCCTTTTGGAAGAATGCGAATTATGGCGGGCGGAAAGAGAGCCCGAACCAAATAATGTTCTCTCGTTTGAAGAATTTTCTCCCAGAAATATGACGAGTCGTAACCACTATGAGTCGGAATTCGAATAA

Protein

MPLCEAPRLELGSAPQTPSVVPSPSSSEISSASSPEPPNVRTTSLFRALAMPLPEPEQPPGQEDLERRLPGYRRIVIPRELTLIELLKQSSGVNSDEEVLRIREAKLRVIAERVGLRRLHVLAPRLRSLILDGSALSSLRDLGIGLVHLKVLSVNRCGLTSLDGVWGLGALRELNAAGNRLHDLQPLGALQKLHTLNMADNPIVDSTRLWTLGVCGSLRRLTLQGTPVSECPQYRPRVAAVLPMLVYLDERPLHRDIEYDSDGIFGPASSSSDSEESDASGGNDLLETSHLPNRTSDTAPKIFNNLQPESSPEKASSSVESDAVPNHLLRRRPATTEGAGARSRTILENRPKTATDRPSFDAPTKLEILNTLMDKEWRCSGSKLTSHGAVCGNLARSLRRLSANSSKSFEIEKEIVEETMEEASRAIAAEIPRAPCLEDWMKFKEQTGIEIDIDFNERLRDVDPLKAIERLEQIERETIQRLDHDQNGRELNNATGVNLPNAAASFASCTMSLLEECELWRAEREPEPNNVLSFEEFSPRNMTSRNHYESEFE

Uniprot

A0A2A4J813 A0A2H1V428 A0A212FNY9

Pubmed

22118469

EMBL

NWSH01002453 PCG68267.1 ODYU01000577 SOQ35587.1 AGBW02004200 OWR55464.1 + More

Proteomes

UP000218220 UP000007151

Pfam

PF12697   Abhydrolase_6        + More
PF12799   LRR_4
PF13855   LRR_8

Interpro

IPR000639   Epox_hydrolase-like        + More
IPR000073   AB_hydrolase_1
IPR001611   Leu-rich_rpt
IPR029058   AB_hydrolase
IPR032675   LRR_dom_sf
IPR040091   LRRC56
IPR025875   Leu-rich_rpt_4

SUPFAM

SSF53474 SSF53474

Gene 3D

3.40.50.1820 3.80.10.10

ProteinModelPortal

A0A2A4J813 A0A2H1V428 A0A212FNY9

PDB

6HKW E-value=0.000227568, Score=107

KEGG

101742350 no KO assigned | (RefSeq) leucine-rich repeat-containing protein 56

GO

GO:0003824 GO:0005515 GO:0006231 GO:0006468 GO:0005509 GO:0016020 GO:0005524 GO:0006412 GO:0016876 GO:0043039

PANTHER

PTHR22708

Length:

553

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00038

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00027

outside

1 - 553

Pi

230.287398

Theta

187.068073

Tajima's D

-1.52286

CLR

10.268683

CSRT

0.0583470826458677

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics