Gene

KWMTBOMO08000

Pre Gene Modal

BGIBMGA001141

Annotation

PREDICTED:_liprin-beta-1_isoform_X7_[Bombyx_mori]

Location

Bomo_Chr13(-):12116684-12153593      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.255 Mitochondrial   Reliability : 1.539 Nuclear   Reliability : 1.503

CDS

ATGGGTAAAAAAACCGAGGTCGACAGTGATAACAACCCAACTTCTTCGGATTCGGATCCTGCAAAGTTGTTAGAAGCAGCACTGCTTCAAATGGATGGTATTATTGCGGAGGCCGGTGGGACGGGTACCAGTGGGTCTACAACTAGTGGTCCTGGTCGCGCAGCCAGAGCAAGAGCCTTAGAGTTGGCTCAGCAACTCGCGTCGTCACTCCAGCACGCCGTTCCACCACCACCTCGGCCCGACTTCACTACAGCCAGTGCTATACTCAGATGGCTTCAACAGAACAACAACAATGTTGCATTGAACGACGCGGAGGATCGTGTGCGTCGATTAGAAGCGGACAAGGAGAGTCTGCAGTTGCAAGTACAGGTGTTATCGGAGCAGATCTCAGCACAGACCGAGAAGATGGTCGACCTAGAACGGGCACTACACGAAGCCAAACAAAGACTTGACGATGCCGAGCAAAAACTTCAGAAGGAAATGCTACAGCGTTCTTCGCTGGAGACGCAAAAGCTGGAGTTGCTGTCGAAACTAAGTGAGACTCCGCCAGCGAACTACGGGCGTCAGATCGAGCGCAACACTCACATGTACTCGTCGCTGCCGCGCTCGTCCGTGCTCGCGTCGGAGGCGCGCGTCGCGTTCGGTAACAAACACAGCATGGTGGTGGCTCGCGGGCGCGGACACTCGGTGCCCAATCTAGTTGAGAAGGAGGAGGCAATACCGCGCGGCAGTCCCTCTCCGTCGCTCCGTGAGGTCCGCTCGCGGCTCGGCAGCGGCTCCGTGCGGCTGGAGGGGGACGAGTTCAGTCGGTCCTCTCTCCGAGCCTCCTCAACGCCCCGACAGAAGCAACAAACGATGCCCTGGCAAACGACAGACATCCGACAGTGGGACTGCGAAACGACCTGCGGCTGGTTGGAGAGTATCGGCATGGAGCAGTACGCGCCCGCCGCCAGGGCGTGGCTCGGCGCCGGCGACGCTAGGGGGGTCCTCGCTAATGCCTCCCACAGCACCATCGAGAAGGAGCTGGCCATCAAACATCCTATGCACAAGAAGAAGATACTCTTGGCTATAATGGATTTATTGGGCAGTCACGGCGACGAGCTGCTGACGGCTGCGGGCGCGCTGAGCGGCGCGTGGGTGCTGCGCTGGCTGGAGGACGTGGGCGTGTGCGGCGCGCGCGAGGCCGCCGCCGACGCCGCGCTGGACGGGCGCGCGCTGCACCGCCTCACGCACCACGACCTGCACGCGCACCTGCGGGTCGCGCACGCCCTGCACGCGCTCTCCATCCGCAGAGGGATACAAGTGCTGCGAGACAACAAGTTCAATCCGGACACGATGATCCGTCGCGGCGTGGAGACGGTCAACGCTGAGGGGGAGACGGAGACCGTGGAGGGCGCGGAGCTGGCGCGCTGGTCGTCGCACCGCGTCATGCAGTGGCTCAAGGAGATAGACCTTGCGGAGTACGCACCGAATCTCCGAGGCGCTGGCGTCCACGGCGGACTCATGCTGCTGGAGCCACGGTTCACCGCCGAACTCCTGGCCGCGCTGCTGAACATTCCCGCCAACAAGACGCTGTTACGGAGACATCTAACGCAGAGATTCAACGATCTCTTAGGCAGAGATGTGATCCAACAGAAAAGAAACGCTGAGCAGACGCTCGGCTACCAGCCGCTCACAGCAACAACCAAATATAAGGTACCAAAGAAAAGTCAGTTCTCGTTGAAACGTAAGAAGAGCAAGGAGGAGTTGGAGATAGGCGAACTGGTGTGCCCCCTCGGCGACGAGTGCTCAGGTGACGTGCCCACATCGCCTACGATGAGAGTAAAGTCAGCGGTATCGGCGGGCGTCGCGTCGGCTGTCTGTCCCCCGCGTGACGCCGCGCGTGCGCACTGA

Protein

MGKKTEVDSDNNPTSSDSDPAKLLEAALLQMDGIIAEAGGTGTSGSTTSGPGRAARARALELAQQLASSLQHAVPPPPRPDFTTASAILRWLQQNNNNVALNDAEDRVRRLEADKESLQLQVQVLSEQISAQTEKMVDLERALHEAKQRLDDAEQKLQKEMLQRSSLETQKLELLSKLSETPPANYGRQIERNTHMYSSLPRSSVLASEARVAFGNKHSMVVARGRGHSVPNLVEKEEAIPRGSPSPSLREVRSRLGSGSVRLEGDEFSRSSLRASSTPRQKQQTMPWQTTDIRQWDCETTCGWLESIGMEQYAPAARAWLGAGDARGVLANASHSTIEKELAIKHPMHKKKILLAIMDLLGSHGDELLTAAGALSGAWVLRWLEDVGVCGAREAAADAALDGRALHRLTHHDLHAHLRVAHALHALSIRRGIQVLRDNKFNPDTMIRRGVETVNAEGETETVEGAELARWSSHRVMQWLKEIDLAEYAPNLRGAGVHGGLMLLEPRFTAELLAALLNIPANKTLLRRHLTQRFNDLLGRDVIQQKRNAEQTLGYQPLTATTKYKVPKKSQFSLKRKKSKEELEIGELVCPLGDECSGDVPTSPTMRVKSAVSAGVASAVCPPRDAARAH

Similarity

Belongs to the universal ribosomal protein uL15 family.

Uniprot

A0A194R4T4   A0A194Q8I9   A0A2H1V5Q0   A0A212FNZ7   A0A139WJM6   Q17AZ4   + More
A0A182G511   A0A1Y1LDY9   A0A1Y1LCX5   Q7QDP4   A0A1Y1L8Z3   A0A1Y1L903   N6TFY0   V5FYY3   A0A1B6CQB7   A0A182P7N2   A0A1B6K0J0   A0A1B6CZU4   A0A1B6KL66   A0A2J7RRY6   A0A2J7RRY9   A0A1Y1L902   A0A1B6DEL6   A0A1B6D628   A0A1B6GL80   A0A1B6E3B8   A0A1B6I3C3   A0A1B6C227   A0A336LW30   A0A2J7RRX7   A0A1B6L063   A0A1B6GFQ5   A0A1B6JT30   K7J0U2   A0A1W4XJG8   A0A2J7RS01   F4W6A8   A0A1W4XII4   A0A1W4XJP5   A0A1B6JDS8   A0A158P224   B3NHG9   A0A1L8DAS7   A0A232EZC8   B4PHG9   A0A1Y1LCZ1   A0A1L8D948   A0A195DML7   A0A1Y1LF41   B4HH77   B4QJG5   U4URV4   A0A195AVQ1   E2ACS6   A0A195FJG8   A0A1Y1LDZ8   Q9VU88   A0A3L8DAK0   A0A1W4XJP9   B4LFJ2   A0A1W4V6U2   A0A0M3QX32   A0A182JWU2   A0A1Y1L918   A0A1W4X993   Q29DL1   B4H6V5   B3MAP4   A0A151IEP1   A0A1Y1LBE8   A0A026VWS9   T1HY52   B4J2Y9   A0A3B0JZ28   A0A067REV5   A0A182X4Y9   A0A182LN24   A0A2A3E6E5   A0A0J7KSN9   A0A154PDW0   A0A146LJL7   A0A1J1IE83   A0A146L669   A0A1J1IAJ9   A0A0K8STZ5  

Pubmed

26354079    22118469    18362917    19820115    17510324    26483478    + More
28004739    12364791    23537049    20075255    21719571    21347285    17994087    28648823    17550304    22936249    20798317    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    30249741    15632085    24508170    24845553    20966253    26823975   

EMBL

KQ460761    KPJ12524.1    KQ459299    KPJ01852.1    ODYU01000577    SOQ35594.1    + More
AGBW02004200    OWR55455.1    KQ971338    KYB28051.1    CH477328    EAT43420.1    JXUM01043607    JXUM01043608    KQ561368    KXJ78829.1    GEZM01061936    JAV70185.1    GEZM01061940    JAV70180.1    AAAB01008849    EAA07113.4    GEZM01061945    JAV70173.1    GEZM01061938    JAV70183.1    APGK01029239    KB740730    ENN79294.1    GALX01005576    JAB62890.1    GEDC01021688    JAS15610.1    GECU01002745    JAT04962.1    GEDC01018311    JAS18987.1    GEBQ01028063    JAT11914.1    NEVH01000597    PNF43594.1    PNF43596.1    GEZM01061941    JAV70179.1    GEDC01013212    GEDC01006918    JAS24086.1    JAS30380.1    GEDC01016168    GEDC01009435    JAS21130.1    JAS27863.1    GECZ01006572    JAS63197.1    GEDC01029855    GEDC01004880    JAS07443.1    JAS32418.1    GECU01026321    JAS81385.1    GEDC01029884    GEDC01010042    JAS07414.1    JAS27256.1    UFQT01000224    SSX22020.1    PNF43593.1    GEBQ01022936    JAT17041.1    GECZ01008484    JAS61285.1    GECU01005384    JAT02323.1    PNF43592.1    GL887707    EGI70243.1    GECU01010381    JAS97325.1    ADTU01006970    CH954178    EDV51695.1    GFDF01010511    JAV03573.1    NNAY01001526    OXU23679.1    CM000159    EDW94430.1    GEZM01061926    JAV70200.1    GFDF01011101    JAV02983.1    KQ980724    KYN14077.1    GEZM01061935    JAV70186.1    CH480815    EDW41402.1    CM000363    CM002912    EDX10374.1    KMY99422.1    KB632337    ERL92871.1    KQ976731    KYM76256.1    GL438568    EFN68820.1    KQ981523    KYN40407.1    GEZM01061929    JAV70195.1    AE014296    BT010308    AAF49801.1    AAN11829.1    AAQ23626.1    AGB94499.1    QOIP01000010    RLU17535.1    CH940647    EDW70310.1    CP012525    ALC45159.1    GEZM01061931    JAV70193.1    CH379070    EAL30403.1    CH479215    EDW33543.1    CH902618    EDV41331.1    KQ977858    KYM99309.1    GEZM01061925    JAV70201.1    KK107670    EZA48197.1    ACPB03023526    CH916366    EDV97159.1    OUUW01000002    SPP76368.1    KK852732    KDR17478.1    KZ288379    PBC26621.1    LBMM01003580    KMQ93358.1    KQ434885    KZC10042.1    GDHC01010326    JAQ08303.1    CVRI01000047    CRK97310.1    GDHC01020563    GDHC01015972    JAP98065.1    JAQ02657.1    CRK97311.1    GBRD01009044    JAG56777.1   

Proteomes

UP000053240    UP000053268    UP000007151    UP000007266    UP000008820    UP000069940    + More
UP000249989    UP000007062    UP000019118    UP000075885    UP000235965    UP000002358    UP000192223    UP000007755    UP000005205    UP000008711    UP000215335    UP000002282    UP000078492    UP000001292    UP000000304    UP000030742    UP000078540    UP000000311    UP000078541    UP000000803    UP000279307    UP000008792    UP000192221    UP000092553    UP000075881    UP000001819    UP000008744    UP000007801    UP000078542    UP000053097    UP000015103    UP000001070    UP000268350    UP000027135    UP000076407    UP000075882    UP000242457    UP000036403    UP000076502    UP000183832   

PRIDE

Q9VU88   

Pfam

PF07647   SAM_2        + More
PF00536   SAM_1
PF00828   Ribosomal_L27A

Interpro

IPR001660   SAM        + More
IPR013761   SAM/pointed_sf       
IPR030444   Liprin-beta       
IPR029515   Liprin       
IPR037617   Liprin-beta_SAM_rpt_1       
IPR037619   Liprin-beta_SAM_rpt_3       
IPR037618   Liprin-beta_SAM_rpt_2       
IPR036227   L18e/L15P_sf       
IPR021131   Ribosomal_L18e/L15P       
IPR001196   Ribosomal_L15_CS       
IPR030878   Ribosomal_L15       

SUPFAM

SSF47769   SSF47769        + More
SSF52080   SSF52080       

Gene 3D

1.10.150.50    

CDD

cd09569  SAM_liprin-beta1_2_repeat3
cd09566  SAM_liprin-beta1_2_repeat2
cd09563  SAM_liprin-beta1_2_repeat1

ProteinModelPortal

A0A194R4T4   A0A194Q8I9   A0A2H1V5Q0   A0A212FNZ7   A0A139WJM6   Q17AZ4   + More
A0A182G511   A0A1Y1LDY9   A0A1Y1LCX5   Q7QDP4   A0A1Y1L8Z3   A0A1Y1L903   N6TFY0   V5FYY3   A0A1B6CQB7   A0A182P7N2   A0A1B6K0J0   A0A1B6CZU4   A0A1B6KL66   A0A2J7RRY6   A0A2J7RRY9   A0A1Y1L902   A0A1B6DEL6   A0A1B6D628   A0A1B6GL80   A0A1B6E3B8   A0A1B6I3C3   A0A1B6C227   A0A336LW30   A0A2J7RRX7   A0A1B6L063   A0A1B6GFQ5   A0A1B6JT30   K7J0U2   A0A1W4XJG8   A0A2J7RS01   F4W6A8   A0A1W4XII4   A0A1W4XJP5   A0A1B6JDS8   A0A158P224   B3NHG9   A0A1L8DAS7   A0A232EZC8   B4PHG9   A0A1Y1LCZ1   A0A1L8D948   A0A195DML7   A0A1Y1LF41   B4HH77   B4QJG5   U4URV4   A0A195AVQ1   E2ACS6   A0A195FJG8   A0A1Y1LDZ8   Q9VU88   A0A3L8DAK0   A0A1W4XJP9   B4LFJ2   A0A1W4V6U2   A0A0M3QX32   A0A182JWU2   A0A1Y1L918   A0A1W4X993   Q29DL1   B4H6V5   B3MAP4   A0A151IEP1   A0A1Y1LBE8   A0A026VWS9   T1HY52   B4J2Y9   A0A3B0JZ28   A0A067REV5   A0A182X4Y9   A0A182LN24   A0A2A3E6E5   A0A0J7KSN9   A0A154PDW0   A0A146LJL7   A0A1J1IE83   A0A146L669   A0A1J1IAJ9   A0A0K8STZ5  

PDB

3TAD     E-value=1.5217e-46,     Score=471

KEGG

101743402    no KO assigned | (RefSeq) liprin-beta-1

GO

GO:0007528   GO:0032991   GO:0051124   GO:0042803   GO:0007412   GO:0016021   GO:0005840   GO:0003735   GO:0006412   GO:0015934   GO:0005515   GO:0004672   GO:0006468   GO:0005509   GO:0016020   GO:0005524   GO:0016876   GO:0043039  

PANTHER

PTHR12587   PTHR12587:SF14  

Length:

630

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02721

Exp number, first 60 AAs:

0.0008

Total prob of N-in:

0.00132

outside

1  -  630

 

 

Pi

171.979448

Theta

144.813033

Tajima's D

-1.558137

CLR

0.850605

CSRT

0.0525473726313684

Interpretation

Uncertain