Gene

KWMTBOMO07996

Pre Gene Modal

BGIBMGA001142

Annotation

cyclin_A_[Bombyx_mori]

Location

Bomo_Chr13(-):12085981-12091023      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.674

CDS

ATGGCTTTTAGAATTCATGAAGATCAAGAAAACACAGCATTAGGCCTAAGAAAAGATGGATCCGACCTATTTTCTACCAACCAAAGGCGTGCCCTCGGAGACCTCAGTCAATTTGCATGCAACCATAATCGGAACACCAAACTAACTGGTCTGACAAACGGAACTTGTAAGGTTCAAGATGAGAACAGGACGGTACGTCAAATCAAGAACGAGAAAAACATCGTTCTTCCCCTATCCCAGTTTCGTGCCTTTAGCGTATATGAAGACAAACCCACCGAGGTGGAGGTGAAAAAGCGGGAGACCACTTACAAACCATTTGCAACCAAGGAGACTAAAAAAGAAAGCAATTTCTTTGTGAATGCTGCTGAAAATGTGAGAGCTCTGTGTGCACAAGTTGAAAAAAAATCGCTTGAGGAAACCAAACCAGATCGATCGAGAGAAGAACCCCCATTACGGAAAGCATTACAAGAAAAGAAAGATGCTGTTGAATCACCCATGTCTGTGGTGGATGCCAGTATTCTGTCGATGTCTATTTCAAAGAATGAGAGTCAAATTATTGAAGATGTTGACGATGAAGAAATCACCACTGCACAGACCGACAGAGAAATGTTTTTCTATGTTGAGGAATATAGGCAGGATATCTATGAATACATGAGGGAAATTGAGGTGAAAAACAGGGCCAACCCCCGCTACATGCGTAAGCAACCAGACATCACACATGTTATGCGCTCAATACTTGTGGACTGGCTAGTTGAAGTATGTGATGAATATCAACAGCAGAGTGAAACTTTACATCTAGCTGTGTCTTACGTAGATAGGTTCCTGTCATACATGAGTGTTGTCAGAACTAAGCTTCAACTTGTCGGAACAGCTGCCACCTATATTGCCGCTAAATATGAAGAAGTATATCCACCAGAAGTCTCAGAATTTGTGTACATCACTGACGACACATACACAAAACGTGAAGTACTGAGAATGGAGCATTTAATTTTAAAGGTGTTATCATTTGATCTCTCAACACCCACCTCACTAGCTTTCCTGTCACATTACTGTATTTCTAATGGTCTCTCAAAGAAGACATTCCATTTGGCATCTTATATTGCGGAGCTGTGCCTACTTGAAGCAGACCCATATCTTCAATTCAAACCCTCAGTAATAGCAGCGTCGGCGCTGGCAACGGCTCGGCATTGCTTACTATGCGAGCAGTGCGCCTGTGATCCTCAGGACGTATACGAAACTAGAGACGCTCCGGGCAAGGTCAACCCGCAATGTGCAATGGTCGCGTGGCCGTCTACGTTGTCCACGTGTTCGGGATACACTTTACTTGAATTGGAAACATGCCTTAAAGAAATTGCTCGTACACATTCCCATGCCTCTGTTCAACCTTATCAAGCCATACCAGACAAATATAAGAGCAACAAGTTTGAAGGCGTGTCACAAGTAGAGCCGCGGCCCATGTTCCCGGTGGGCAAGTACCAAGCCCCGGCCGCCGCCCGCCCGCCCCCAGCGGCCGACTCTGCGCGCGCCACCAGCTAG

Protein

MAFRIHEDQENTALGLRKDGSDLFSTNQRRALGDLSQFACNHNRNTKLTGLTNGTCKVQDENRTVRQIKNEKNIVLPLSQFRAFSVYEDKPTEVEVKKRETTYKPFATKETKKESNFFVNAAENVRALCAQVEKKSLEETKPDRSREEPPLRKALQEKKDAVESPMSVVDASILSMSISKNESQIIEDVDDEEITTAQTDREMFFYVEEYRQDIYEYMREIEVKNRANPRYMRKQPDITHVMRSILVDWLVEVCDEYQQQSETLHLAVSYVDRFLSYMSVVRTKLQLVGTAATYIAAKYEEVYPPEVSEFVYITDDTYTKREVLRMEHLILKVLSFDLSTPTSLAFLSHYCISNGLSKKTFHLASYIAELCLLEADPYLQFKPSVIAASALATARHCLLCEQCACDPQDVYETRDAPGKVNPQCAMVAWPSTLSTCSGYTLLELETCLKEIARTHSHASVQPYQAIPDKYKSNKFEGVSQVEPRPMFPVGKYQAPAAARPPPAADSARATS

Similarity

Belongs to the cyclin family.

Uniprot

C0KLC6   D3KYT0   H9IV62   A0A2A4J5X0   A0A2H1V430   A0A159ZM63   + More
A0A194QEG5   A0A194R3Z2   S4NXS6   A0A212FNY1   A0A0L7KZE5   A0A232FEB5   K7IYS2   A0A1W4X1G6   D2A0W3   A0A067RLB0   A0A0C9QU55   A0A291S6U8   A0A2A3EQK3   U4UL13   A0A087ZRM6   A0A0N0U635   A0A1Q3FVN6   A0A2J7PNN2   A0A1Q3FVI2   A0A1Y1MAX6   A0A195FLS6   A0A195BUT2   A0A151XJ02   A0A182JQ41   F4WRV2   A0A154PFY7   Q17NN3   A0A023ET01   A0A182WZU3   A0A182GFJ6   A0A182MYT8   A0A195ENW5   A0A310SWU3   E9ID93   A0A0J7LAC7   E2AFN5   A0A182HQD8   A0A195BZU4   A0A182KSA3   A0A182VFP5   A0A182WEW9   A0A1B6LX76   E2B3E7   A0A1I8PRV0   A0A1I8N208   W5JK10   A0A182P5U9   A0A182RD17   E9HA37   A0A1B0GDC4   A0A0N7ZYA6   A0A0P5FKC9   A0A0P5AD35   A0A0N8A4L9   A0A0P5EHE5   A0A0P5T704   A0A0P5VFS4  

Pubmed

19121390    26354079    23622113    22118469    26227816    28648823    + More
20075255    18362917    19820115    24845553    28992199    23537049    28004739    21719571    17510324    24945155    26483478    21282665    20798317    20966253    25315136    20920257    23761445    21292972   

EMBL

FJ619105    ACM79367.1    AB546966    BAI77429.1    BABH01000558    NWSH01003112    + More
PCG66924.1    ODYU01000577    SOQ35600.1    KU051540    AMY96431.1    KQ459299    KPJ01856.1    KQ460761    KPJ12528.1    GAIX01012042    JAA80518.1    AGBW02004200    OWR55451.1    JTDY01004102    KOB68597.1    NNAY01000335    OXU29124.1    KQ971338    EFA01624.1    KK852444    KDR23813.1    GBYB01004202    JAG73969.1    MF432986    ATL75337.1    KZ288202    PBC33506.1    KB632374    ERL93807.1    KQ435740    KOX76832.1    GFDL01003437    JAV31608.1    NEVH01023380    PNF17945.1    GFDL01003436    JAV31609.1    GEZM01040004    JAV81016.1    KQ981490    KYN41202.1    KQ976401    KYM92379.1    KQ982080    KYQ60317.1    GL888292    EGI63109.1    KQ434886    KZC10100.1    CH477198    EAT48280.1    GAPW01001175    JAC12423.1    JXUM01059639    JXUM01059640    KQ562064    KXJ76764.1    KQ978625    KYN29589.1    KQ759874    OAD62364.1    GL762454    EFZ21530.1    LBMM01000137    KMR04793.1    GL439118    EFN67786.1    APCN01003311    KQ978501    KYM93446.1    GEBQ01011679    JAT28298.1    GL445323    EFN89825.1    ADMH02001279    ETN63235.1    GL732610    EFX71416.1    CCAG010004719    CCAG010004720    GDIP01200689    JAJ22713.1    GDIP01147150    JAJ76252.1    GDIP01200688    JAJ22714.1    GDIP01182985    JAJ40417.1    GDIP01209943    GDIP01148453    GDIP01109403    GDIP01049946    LRGB01001581    JAJ74949.1    KZS11122.1    GDIP01130096    JAL73618.1    GDIP01100537    JAM03178.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000053240    UP000007151    UP000037510    + More
UP000215335    UP000002358    UP000192223    UP000007266    UP000027135    UP000242457    UP000030742    UP000005203    UP000053105    UP000235965    UP000078541    UP000078540    UP000075809    UP000075881    UP000007755    UP000076502    UP000008820    UP000076407    UP000069940    UP000249989    UP000075884    UP000078492    UP000036403    UP000000311    UP000075840    UP000078542    UP000075882    UP000075903    UP000075920    UP000008237    UP000095300    UP000095301    UP000000673    UP000075885    UP000075900    UP000000305    UP000092444    UP000076858   

PRIDE

C0KLC6    D3KYT0    H9IV62   

Pfam

PF00134   Cyclin_N        + More
PF02984   Cyclin_C
PF16500   Cyclin_N2

Interpro

IPR039361   Cyclin        + More
IPR006671   Cyclin_N       
IPR013763   Cyclin-like       
IPR036915   Cyclin-like_sf       
IPR004367   Cyclin_C-dom       
IPR032447   Cyclin-A_N       

SUPFAM

SSF47954   SSF47954       

CDD

cd00043  CYCLIN

ProteinModelPortal

C0KLC6   D3KYT0   H9IV62   A0A2A4J5X0   A0A2H1V430   A0A159ZM63   + More
A0A194QEG5   A0A194R3Z2   S4NXS6   A0A212FNY1   A0A0L7KZE5   A0A232FEB5   K7IYS2   A0A1W4X1G6   D2A0W3   A0A067RLB0   A0A0C9QU55   A0A291S6U8   A0A2A3EQK3   U4UL13   A0A087ZRM6   A0A0N0U635   A0A1Q3FVN6   A0A2J7PNN2   A0A1Q3FVI2   A0A1Y1MAX6   A0A195FLS6   A0A195BUT2   A0A151XJ02   A0A182JQ41   F4WRV2   A0A154PFY7   Q17NN3   A0A023ET01   A0A182WZU3   A0A182GFJ6   A0A182MYT8   A0A195ENW5   A0A310SWU3   E9ID93   A0A0J7LAC7   E2AFN5   A0A182HQD8   A0A195BZU4   A0A182KSA3   A0A182VFP5   A0A182WEW9   A0A1B6LX76   E2B3E7   A0A1I8PRV0   A0A1I8N208   W5JK10   A0A182P5U9   A0A182RD17   E9HA37   A0A1B0GDC4   A0A0N7ZYA6   A0A0P5FKC9   A0A0P5AD35   A0A0N8A4L9   A0A0P5EHE5   A0A0P5T704   A0A0P5VFS4  

PDB

4CFU     E-value=3.33254e-69,     Score=666

KEGG

100216492    K06627 cyclin-A | (RefSeq) Cyca, BmcycA; cyclin A

GO

GO:0005634   GO:0016538   GO:0006468   GO:0000307   GO:0000079   GO:0019901   GO:0005737   GO:0044772   GO:0006030   GO:0008061   GO:0016020   GO:0022891   GO:0006427   GO:0006412   GO:0016876   GO:0043039  

PANTHER

PTHR10177  

Length:

511

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.03165

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00274

outside

1  -  511

 

 

Pi

137.064208

Theta

127.700272

Tajima's D

-0.582019

CLR

0.343249

CSRT

0.222888855557222

Interpretation

Uncertain