Gene

KWMTBOMO07995

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr13(-):12078317-12080143      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.851 Nuclear   Reliability : 2.309

CDS

ATGCCGCCTCTCGCACGCCCCTCAGGCCAACCACCGGCTTACGATGACGATAACAAGGCAGAGTTGCTGGCCGATGCACTGCAAGAGCAGTGCACCACCAGCACTCAACACGCGGACCCCGATCACACCGAGTTAGTCGACAAGGAGGTCGAGCGCAGAACTTCCCTGCCGCCCTCGGCCGCGTTACCCCCCATTACCACTTCCGAGGTTAAGGATGCGATCGATAACCTGCAACCACGGAAAGCTCCCGGATCCGACGGCATCCGCAACCGCGCGCTTAAATTGTTACCAGCCCAAATAATAACGATATTGGCCACCATTTTAAATGCTGCTATGACGAACTGCATCTTTCCCGCGGCGTGGAAAGAAGCTGACGTTATCGGCATACACAAGCCGGGCAAACCGAAGAAAGAAACCGCGAGTTACCGCCCCATCAGTCTCCTCCCGGCGATAGGCAAACTATACGAACGGCTCCTTCGTAAACGCCTCTGGGACTTCGTCGCGTCCAACAAAATATTGATCGACGAGCAGTTTGGGTTCCGCGCCAGACACTTGTGCGTCCATCAAGTGCACCGCCTCACGGAGCACATCTTACTAGGGCTGAATAGGCGGAAACCCATCCCGACAGGAGTCCTCTTCTTCGATATAGCGAAGGCGTTCGACAAAGTCTGGCACAACGGTTTGATATACAAACTGTATAACATGGGAGTGCCAGACAGACTCGTGCTCATCATACGAGACTACTTGTCGAACCGTTCGTTCCGATATCGAGTCGAGGGAACGCGTTCCCGCCCCCGTCACGTCACAGCCGGAGTCCCGCAAGGCTCCGCCCTCTCCCCGTTACTATTCAGTTTGCATATCAATGATATACTCCGGTCTCCGGAGACCAATCTGGCGCTCTTCGCTGATGACACCGCCATCTACTACTCGTGTAGGAAGAAGACGTTGCTTCATCGACGACTTCAGACCGCAGCTACCACCATGGGACAGTGGTTCCGGAAGTGGCGCATCGACATCAACCCCACGAAAAGCACAGCGGTGCTCTTCAAAAGGGGTCGCCCTCCGAACACCACGTTGAGCATCCCTCTCCCGTCTAGGCGCGTCGACACCTCCGCCTCCGCCATTCGCCCAAGCACGATGTTCGACCAGCCCATACCGTGGGCCCCGAAGGTCAAATATTTAGGCGTCACCCTCGACAGAAGGATGACATTCCGCCCCCATATTAAGACGGTACGCGATCGTGCTGCCTTCATTCTAGGCCGTCTCTACCCGATGATATGCAGGCGAAGTAAAATGTCCCTTAGAAATAAGGTGACACTCTACAAAACTTGCACACGCCCAGTCATGACTTATGCAAGTGTAGTGTTCGCTCACGCGGCCCGCACACACTTAAAATCCTTCCAAATTATTCAATCCCGTTTTTGCAGGATAGCCGTCGGAGCCCCGTGGTTCGTCAGGAACGTCGACCTCCATGACGATCTGGACTTAGAGTCCATCATTAAGTATCTATACAGTCGGCGTCGAAGCGCCACTTCGATAAAGCGGCATGACACGAGAACCCTCTCATCGTGGCCGCCGGTAACTACATTCCCGATCCTGCGGACAGAATGGAAAGCAGTCGACGTCGCCCAAAACACGTCATCTCGGATCCTTCCGATCCACTAA

Protein

MPPLARPSGQPPAYDDDNKAELLADALQEQCTTSTQHADPDHTELVDKEVERRTSLPPSAALPPITTSEVKDAIDNLQPRKAPGSDGIRNRALKLLPAQIITILATILNAAMTNCIFPAAWKEADVIGIHKPGKPKKETASYRPISLLPAIGKLYERLLRKRLWDFVASNKILIDEQFGFRARHLCVHQVHRLTEHILLGLNRRKPIPTGVLFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDYLSNRSFRYRVEGTRSRPRHVTAGVPQGSALSPLLFSLHINDILRSPETNLALFADDTAIYYSCRKKTLLHRRLQTAATTMGQWFRKWRIDINPTKSTAVLFKRGRPPNTTLSIPLPSRRVDTSASAIRPSTMFDQPIPWAPKVKYLGVTLDRRMTFRPHIKTVRDRAAFILGRLYPMICRRSKMSLRNKVTLYKTCTRPVMTYASVVFAHAARTHLKSFQIIQSRFCRIAVGAPWFVRNVDLHDDLDLESIIKYLYSRRRSATSIKRHDTRTLSSWPPVTTFPILRTEWKAVDVAQNTSSRILPIH

Uniprot

Q9XXW0   Q9BPQ0   Q93137   A0A0N1PFV1   O96546   A0A0N0PA09   + More
A0A1Y1NA23   A0A139W8G9   A0A139WA11   V5GNF3   A0A2S2PR14   X1WMU5   J9KKL3   X1WWC4   A0A2S2NGV8   V5GNJ2   X1WLB2   A0A087U2S8   X1WXU3   A0A2S2Q823   A0A224XF24   J9KC83   A0A3N5Z7I3   A0A023EYS8   A0A023EZE6   A0A2S2QJM7   Q07995   A0A2S2PX53   A0A182GA28   A0A1Y1M7E9   A0A2S2PH29   A0A2H8U0H5   A0A224XB44   A0A2S2PPK8   A0A2J7R7D0   A0A2S2Q383   A0A2J7RIW7   A0A023F6S4   A0A2J7QUJ9   A0A2J7Q059   A0A2J7PMP6   A0A2J7Q4F7   A0A2J7R4B7   A0A2J7RM10   J9KCZ4   A0A2J7RB54   A0A2J7RPU2   A0A1Y1KUU7   A0A2J7RS77   A0A2S2QEE0   A0A2J7Q0Q6   A0A2J7R2E1   A0A2J7R6U1   A0A224X6Q4   A0A2J7PMP9   A0A2J7QFL0   A0A2J7RKP3   A0A087T1W0   A0A2S2P698   A0A2J7PVX3   A0A2J7QR37   A0A182GMD9   A0A2S2N814   A0A2M4BEF4   X1WNI2   A0A0A9YU04   A0A0A9YJ00   A0A2M4BEZ9   J9M522   A0A2J7R8R8   A0A2J7Q1Y9   A0A2S2Q352   A0A2J7PBY3   A0A2J7QY69   A0A2S2QTZ8   A0A2J7Q2R1   A0A2J7PDS9   A0A2M4BDA5   Q8T9X4   A0A2M4BD66   A0A2M4BD62   A0A2J7PDM0   Q8I7P8   A0A2J7QEZ4   A0A2J7Q5G9   A0A2H8TWD9   A0A1Y1LKN6   A0A0J7K4E0   A0A182GB02   A0A2S2RAN7   A0A2A4K8E7   A0A0J7KBP6   A0A2J7R4B1   A0A2J7PVE7   A0A224XI99  

Pubmed

10333566    26354079    10380107    28004739    18362917    19820115    + More
30086797    25474469    8387152    26483478    25401762   

EMBL

AB018558    BAA76304.1    AB055391    BAB21761.1    U07847    AAA17752.1    + More
KQ459265    KPJ02064.1    AF081103    AAC72921.1    KQ459259    KPJ02068.1    GEZM01008457    JAV94772.1    KQ973342    KXZ75569.1    KQ971729    KYB24751.1    GALX01005359    JAB63107.1    GGMR01019198    MBY31817.1    ABLF02014862    ABLF02014866    ABLF02061908    ABLF02029306    ABLF02029314    ABLF02060138    ABLF02003961    ABLF02059872    GGMR01003407    MBY16026.1    GALX01005299    JAB63167.1    ABLF02042518    ABLF02057746    KK117880    KFM71667.1    ABLF02008933    GGMS01004685    MBY73888.1    GFTR01008038    JAW08388.1    ABLF02033757    RPOV01000134    RPJ78669.1    GBBI01004395    JAC14317.1    GBBI01004571    JAC14141.1    GGMS01008766    MBY77969.1    S59870    AAB26437.2    GGMS01000737    MBY69940.1    JXUM01155316    KQ572171    KXJ68070.1    GEZM01038405    JAV81653.1    GGMR01016114    MBY28733.1    GFXV01007093    MBW18898.1    GFTR01008262    JAW08164.1    GGMR01018716    MBY31335.1    NEVH01006736    PNF36716.1    GGMS01002992    MBY72195.1    NEVH01003017    PNF40781.1    GBBI01001646    JAC17066.1    NEVH01010546    PNF32261.1    NEVH01020071    PNF21969.1    NEVH01023962    PNF17612.1    NEVH01018383    PNF23463.1    NEVH01007443    PNF35684.1    NEVH01021586    NEVH01006600    NEVH01002584    PNF19589.1    PNF37419.1    PNF41868.1    ABLF02008463    NEVH01005938    PNF38077.1    NEVH01001355    PNF42855.1    GEZM01074951    JAV64378.1    NEVH01000280    PNF43672.1    GGMS01006359    MBY75562.1    NEVH01019964    PNF22161.1    NEVH01007838    PNF34986.1    NEVH01006754    PNF36554.1    GFTR01008279    JAW08147.1    NEVH01023961    PNF17613.1    NEVH01014858    PNF27387.1    NEVH01002716    PNF41415.1    KK113014    KFM59099.1    GGMR01012305    MBY24924.1    NEVH01020940    PNF20481.1    NEVH01011985    PNF31054.1    JXUM01014072    KQ560393    KXJ82651.1    GGMR01000676    MBY13295.1    GGFJ01002256    MBW51397.1    ABLF02008153    ABLF02008462    ABLF02008464    GBHO01021814    GBHO01010549    JAG21790.1    JAG33055.1    GBHO01010547    GBHO01010546    JAG33057.1    JAG33058.1    GGFJ01002257    MBW51398.1    ABLF02024246    NEVH01006721    PNF37225.1    NEVH01019376    PNF22596.1    GGMS01002955    MBY72158.1    NEVH01027074    PNF13841.1    NEVH01009134    PNF33528.1    GGMS01012005    MBY81208.1    NEVH01019080    PNF22876.1    NEVH01026154    PNF14491.1    GGFJ01001842    MBW50983.1    AF456125    AAL57609.1    GGFJ01001844    MBW50985.1    GGFJ01001843    MBW50984.1    NEVH01026386    PNF14434.1    AY180919    AAN87272.1    NEVH01015305    NEVH01006671    PNF27154.1    PNF37357.1    NEVH01017559    PNF23833.1    GFXV01006424    MBW18229.1    GEZM01053022    JAV74219.1    LBMM01014395    KMQ85192.1    JXUM01241784    KQ635293    KXJ62492.1    GGMS01017914    MBY87117.1    NWSH01000032    PCG80497.1    LBMM01010106    KMQ87671.1    NEVH01007578    PNF35646.1    NEVH01020963    PNF20308.1    GFTR01008256    JAW08170.1   

Proteomes

UP000053268    UP000007266    UP000007819    UP000054359    UP000069940    UP000249989    + More
UP000235965    UP000036403    UP000218220   

PRIDE

Q9XXW0    Q9BPQ0    Q93137    Q8T9X4    Q8I7P8   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF07530   PRE_C2HC
PF03372   Exo_endo_phos
PF10551   MULE

Interpro

IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR006579   Pre_C2HC_dom       
IPR018289   MULE_transposase_dom       
IPR036875   Znf_CCHC_sf       

SUPFAM

SSF56219   SSF56219        + More
SSF57756   SSF57756       

Gene 3D

3.60.10.10    

ProteinModelPortal

Q9XXW0   Q9BPQ0   Q93137   A0A0N1PFV1   O96546   A0A0N0PA09   + More
A0A1Y1NA23   A0A139W8G9   A0A139WA11   V5GNF3   A0A2S2PR14   X1WMU5   J9KKL3   X1WWC4   A0A2S2NGV8   V5GNJ2   X1WLB2   A0A087U2S8   X1WXU3   A0A2S2Q823   A0A224XF24   J9KC83   A0A3N5Z7I3   A0A023EYS8   A0A023EZE6   A0A2S2QJM7   Q07995   A0A2S2PX53   A0A182GA28   A0A1Y1M7E9   A0A2S2PH29   A0A2H8U0H5   A0A224XB44   A0A2S2PPK8   A0A2J7R7D0   A0A2S2Q383   A0A2J7RIW7   A0A023F6S4   A0A2J7QUJ9   A0A2J7Q059   A0A2J7PMP6   A0A2J7Q4F7   A0A2J7R4B7   A0A2J7RM10   J9KCZ4   A0A2J7RB54   A0A2J7RPU2   A0A1Y1KUU7   A0A2J7RS77   A0A2S2QEE0   A0A2J7Q0Q6   A0A2J7R2E1   A0A2J7R6U1   A0A224X6Q4   A0A2J7PMP9   A0A2J7QFL0   A0A2J7RKP3   A0A087T1W0   A0A2S2P698   A0A2J7PVX3   A0A2J7QR37   A0A182GMD9   A0A2S2N814   A0A2M4BEF4   X1WNI2   A0A0A9YU04   A0A0A9YJ00   A0A2M4BEZ9   J9M522   A0A2J7R8R8   A0A2J7Q1Y9   A0A2S2Q352   A0A2J7PBY3   A0A2J7QY69   A0A2S2QTZ8   A0A2J7Q2R1   A0A2J7PDS9   A0A2M4BDA5   Q8T9X4   A0A2M4BD66   A0A2M4BD62   A0A2J7PDM0   Q8I7P8   A0A2J7QEZ4   A0A2J7Q5G9   A0A2H8TWD9   A0A1Y1LKN6   A0A0J7K4E0   A0A182GB02   A0A2S2RAN7   A0A2A4K8E7   A0A0J7KBP6   A0A2J7R4B1   A0A2J7PVE7   A0A224XI99  

PDB

6AR3     E-value=0.00881562,     Score=93

KEGG

105842121    no KO assigned | (RefSeq) uncharacterized LOC105842121

GO

GO:0003964   GO:0004519   GO:0008270   GO:0003676  

Length:

554

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.24824000000001

Exp number, first 60 AAs:

0

Total prob of N-in:

0.04433

outside

1  -  554

 

 

Pi

1.231247

Theta

0.964526

Tajima's D

0.138761

CLR

135.10982

CSRT

0.48117594120294

Interpretation

Uncertain