Gene

KWMTBOMO07989  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA001009

Annotation

PREDICTED:_protein_PTCD3_homolog?_mitochondrial_[Amyelois_transitella]

Location

Bomo_Chr13(+):12026524-12039092      View in EpiBrowser

Full name

Protein PTCD3 homolog, mitochondrial      

Location in the cell

Cytoplasmic   Reliability : 1.838

CDS

ATGGCAGAAAGAGTCCACGCTCTGCTTATGAAGAACAATAACTATAAATTGGTAGGCGACGCCTACAAGGAGAGCATATACTACAGACATCTAGTAACTGTTGCTTGCAGGCATGCACCATTCGAGAAAGCAACCGAATATTTAGACACGCTAATACCAAATATTTATATACCGGAACCATCGGTAATGGAAGAGATCATAAGAACCTTAGAAGTGGCAGGCGCGGGCGACCGACTGGCACAGGCGTGGTCCCAGATCATAGTGTTCGGACACGCGAAACGAACCAAACTCGTTGAAAGGCTGCTCTCAGCTTTATGTAATTGTTACGAGTATCAGGAGGAAGATGTAAAAGAGAAAATACGATCAGCGGCTGAAAGTATATTGAAACATGGAGAGACTTTAGAACAAAGAGATGAATCCAGAGACCAGAGATCACCGGTCTCACAAAAGTTATCGGCGACAGCGCTTTCGAACATCATCGAGCTATTGTCCGACGTGTCAGATAAATCTTCCGAACGCTGGACCAGTGTTGAAACTGCACTCAATAAATTAAAACAGGAGCAAGCCACCGGAGTTCCATCTAAGCCAGAATCTATATCAACCTTAGCCGAGAAGGCTGCCTCTATGGGAAAACTAGAAATAGCTGCTACGGCCGTAGCTTACCTGGCGGAGTGCGGGTTCGAGGAGGCGGCGGGTGCGAGCGCGCGCGTGCTGGGCGCGATGCTGAACCGTCCCGAGGAGGAGGTGCGCGCGCTGCTGCAGGAGCCGGCGGGCGCGCTGGCGGGCTCGCTGCACCCCGCCGCGCTCGCTGTACTCCACTCTTACCACTTAGCCAAGACTGGAACTGCAATACGCGATTCAGAATCGTCGACCAGTTCGGAAAGTGATTCCGAATCGTCATCCGACGAAGACTAG

Protein

MAERVHALLMKNNNYKLVGDAYKESIYYRHLVTVACRHAPFEKATEYLDTLIPNIYIPEPSVMEEIIRTLEVAGAGDRLAQAWSQIIVFGHAKRTKLVERLLSALCNCYEYQEEDVKEKIRSAAESILKHGETLEQRDESRDQRSPVSQKLSATALSNIIELLSDVSDKSSERWTSVETALNKLKQEQATGVPSKPESISTLAEKAASMGKLEIAATAVAYLAECGFEEAAGASARVLGAMLNRPEEEVRALLQEPAGALAGSLHPAALAVLHSYHLAKTGTAIRDSESSTSSESDSESSSDED

Description

Mitochondrial protein that may have a role in mitochondrial translation.

Similarity

Belongs to the mitochondrion-specific ribosomal protein mS39 family.

Keywords

Complete proteome   Mitochondrion   Reference proteome   Ribonucleoprotein   Ribosomal protein   RNA-binding   rRNA-binding   Transit peptide   Translation regulation  

Feature

chain  Protein PTCD3 homolog, mitochondrial

Uniprot

H9IUS9   A0A3S2PED3   A0A2H1V950   A0A2H1VAV0   A0A194Q8J9   A0A2A4JMY8   + More
A0A194R4U4   A0A212FNY6   A0A0L7LCL4   A0A067QP82   A0A2J7RHB2   A0A2J7RH86   A0A1S4FP34   A0A1B6L008   A0A1B6LKV7   Q16U28   A0A182G0J7   A0A1B6HTV0   A0A1B6ESX9   J9JM04   D6WAL8   A0A2S2Q7L1   A0A1W4X4P3   A0A1B6G863   A0A2S2QHZ6   A0A034W768   A0A1Q3FEI4   B0XIM2   A0A0K8VV57   A0A3R7M0A7   A0A226EW06   A0A1Y1LFU0   A0A2M3Z6D9   A0A182F2W4   A0A2M4BHL6   A0A2M4BGC1   B3MGW3   A0A2M4AKH2   A0A2M4ALH2   A0A084WTY8   A0A0P4W2G5   A0A182Y0Q4   A0A182TM41   A0A182REW5   W5JUD5   A0A1J1IW38   A0A182SQ93   A0A182PUI4   A0A2R5LHZ5   L7MD05   T2FGD8   A1Z9A8   A0A131YKZ7   A0A224Z4T3   A0A182MSQ5   A0A182J6R7   N6T897   A0A182NBT0   A0A023GLS1   A0A131XEX3   A0A182VGL7   G3MK28   A0A0C9PNM1   A0A1E1XF47   A0A1B6E9B4  

Pubmed

19121390    26354079    22118469    26227816    24845553    17510324    + More
26483478    18362917    19820115    25348373    28004739    17994087    24438588    25244985    20920257    23761445    25576852    10731132    12537572    12537569    26830274    28797301    23537049    28049606    22216098    28503490   

EMBL

BABH01000563    RSAL01000074    RVE48940.1    ODYU01001317    SOQ37347.1    ODYU01001316    + More
SOQ37344.1    KQ459299    KPJ01862.1    NWSH01001018    PCG73088.1    KQ460761    KPJ12534.1    AGBW02004200    OWR55445.1    JTDY01001767    KOB72946.1    KK853097    KDR11430.1    NEVH01003746    PNF40197.1    PNF40199.1    GEBQ01022928    JAT17049.1    GEBQ01015730    JAT24247.1    CH477633    EAT38029.1    JXUM01000181    KQ560102    KXJ84557.1    GECU01029616    JAS78090.1    GECZ01028713    JAS41056.1    ABLF02015958    KQ971312    EEZ97978.1    GGMS01003979    MBY73182.1    GECZ01011306    JAS58463.1    GGMS01008141    MBY77344.1    GAKP01008967    JAC49985.1    GFDL01009123    JAV25922.1    DS233330    EDS29446.1    GDHF01009565    JAI42749.1    QCYY01002563    ROT69434.1    LNIX01000002    OXA61021.1    GEZM01061488    JAV70436.1    GGFM01003313    MBW24064.1    GGFJ01003408    MBW52549.1    GGFJ01002968    MBW52109.1    CH902619    EDV37881.1    GGFK01007968    MBW41289.1    GGFK01008261    MBW41582.1    ATLV01026965    KE525421    KFB53682.1    GDRN01108499    GDRN01108498    JAI57230.1    ADMH02000466    ETN66364.1    CVRI01000063    CRL04320.1    GGLE01005016    MBY09142.1    GACK01003327    JAA61707.1    BT150278    AGV77180.1    AE013599    AY121671    GEDV01009966    JAP78591.1    GFPF01010447    MAA21593.1    AXCM01003106    APGK01047785    KB741089    ENN73943.1    GBBM01000607    JAC34811.1    GEFH01003913    JAP64668.1    JO842229    AEO33846.1    GBYB01002718    JAG72485.1    GFAC01001323    JAT97865.1    GEDC01002782    JAS34516.1   

Proteomes

UP000005204    UP000283053    UP000053268    UP000218220    UP000053240    UP000007151    + More
UP000037510    UP000027135    UP000235965    UP000008820    UP000069940    UP000249989    UP000007819    UP000007266    UP000192223    UP000002320    UP000283509    UP000198287    UP000069272    UP000007801    UP000030765    UP000076408    UP000075902    UP000075900    UP000000673    UP000183832    UP000075901    UP000075885    UP000000803    UP000075883    UP000075880    UP000019118    UP000075884    UP000075903   

PRIDE

H9IUS9    A1Z9A8   

Pfam

PF17177   PPR_long        + More
PF13812   PPR_3
PF01535   PPR
PF03190   Thioredox_DsbH
PF13041   PPR_2

Interpro

IPR037387   PTCD3        + More
IPR011990   TPR-like_helical_dom_sf       
IPR016024   ARM-type_fold       
IPR033443   PPR_long       
IPR036508   Chitin-bd_dom_sf       
IPR002557   Chitin-bd_dom       
IPR002885   Pentatricopeptide_repeat       
IPR004879   DUF255       
IPR036249   Thioredoxin-like_sf       
IPR008928   6-hairpin_glycosidase_sf       
IPR024705   Ssp411       

SUPFAM

SSF48371   SSF48371        + More
SSF57625   SSF57625       
SSF52833   SSF52833       
SSF48208   SSF48208       

Gene 3D

1.25.40.10    

ProteinModelPortal

H9IUS9   A0A3S2PED3   A0A2H1V950   A0A2H1VAV0   A0A194Q8J9   A0A2A4JMY8   + More
A0A194R4U4   A0A212FNY6   A0A0L7LCL4   A0A067QP82   A0A2J7RHB2   A0A2J7RH86   A0A1S4FP34   A0A1B6L008   A0A1B6LKV7   Q16U28   A0A182G0J7   A0A1B6HTV0   A0A1B6ESX9   J9JM04   D6WAL8   A0A2S2Q7L1   A0A1W4X4P3   A0A1B6G863   A0A2S2QHZ6   A0A034W768   A0A1Q3FEI4   B0XIM2   A0A0K8VV57   A0A3R7M0A7   A0A226EW06   A0A1Y1LFU0   A0A2M3Z6D9   A0A182F2W4   A0A2M4BHL6   A0A2M4BGC1   B3MGW3   A0A2M4AKH2   A0A2M4ALH2   A0A084WTY8   A0A0P4W2G5   A0A182Y0Q4   A0A182TM41   A0A182REW5   W5JUD5   A0A1J1IW38   A0A182SQ93   A0A182PUI4   A0A2R5LHZ5   L7MD05   T2FGD8   A1Z9A8   A0A131YKZ7   A0A224Z4T3   A0A182MSQ5   A0A182J6R7   N6T897   A0A182NBT0   A0A023GLS1   A0A131XEX3   A0A182VGL7   G3MK28   A0A0C9PNM1   A0A1E1XF47   A0A1B6E9B4  

PDB

6GAZ     E-value=1.31388e-09,     Score=149

KEGG

101744266    K17659 pentatricopeptide repeat domain-containing protein 3 | (RefSeq) protein PTCD3 homolog, mitoch

GO

GO:0043024   GO:0005739   GO:0019843   GO:0032543   GO:0006030   GO:0008061   GO:0005576   GO:0005840   GO:0006417   GO:0003824  

PANTHER

PTHR16276   PTHR42899  

Subcellular location

Mitochondrion  

Length:

304

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.04894

Exp number, first 60 AAs:

0.00016

Total prob of N-in:

0.01444

outside

1  -  304

 

 

Pi

259.95201

Theta

163.173498

Tajima's D

1.930091

CLR

0.768335

CSRT

0.873856307184641

Interpretation

Uncertain