Gene

KWMTBOMO07988  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA001009

Annotation

PREDICTED:_protein_PTCD3_homolog?_mitochondrial_[Amyelois_transitella]

Location

Bomo_Chr13(+):12019454-12026129      View in EpiBrowser

Full name

Protein PTCD3 homolog, mitochondrial      

Location in the cell

Mitochondrial   Reliability : 1.009

CDS

ATGTATTCCAATATAGTAATTACGAGACAGATTTCAAAAATTAAATGTTTATGTCGATCCTTGGTAAGTATCGAAAGTCAGAAAACTCCACAAAGTGGTGCCTCTAGTGATGGTATATCACCGCCTGTTCGCATACAAAGAGGGCCAACTGATATACTTCAAGCTTTGTCCACCACTGTTGGAATTGATCCTACAGCTGCACATTACAAGTACCATGATGATCCATATTTAATACCATTATCAAATTATCGTAAGAGAGCTTATGCACTGGCAGCTGAAGCTGGTCGAAAAGCAGCAATATGGATTAGAGATGAACATGCAGACTTGTTTACAACAAGAATCTGGGATCCTCCGCTAAGGAAAAAAACACCTTACTATAATGCTGATCCGAAAATTGAAGCTTTCTCGCCCAAACCGATTTATAATGACGAAAGCAAGGTAACTGAAGAAGATCTAATATATACAATCCAAAATGCTCTCATTGAAGACTCAATTAAAGTATATCAGTTACTTGGCGGGAGTCAAGGAGTGAGTGATGAACTGAAACTGCAATTGTTGCAACTTCTGTGTTTCTATAATGAAAAGGAGCCTGATTCTGTGGAATGGTTAGAGGAGAGATGGTTTTCGGCAAACACTAGAGAACGACAAGCAGCTACTTGGAGATTGGGAAGTTTGGCAGATACAATTTTTACATCAATGGAACCAAAAAGTCCAGAAGCATACTGTGCAATCATACAAGGAATGGCAAAATACTATCAGGCAGAAAGAGCTTATGAACTATCTCAGGAAGCAATTGAAAAAGGCATACCATTGTCGACTGGGGTATACAATGCTTTACTAGGATGTATAGGGTTCTTGAGAGAAGGTGCTACCTTACGGATAGAAGCCCTAAAATCGACACTAATGCAAATGAACGAACAGGGTCTCTCGCCAAATATTGAGACATTGAGTGCTTGTCTCCGTTCTATATCTGTGTGGGGTGGCGGCATACAATTACAAAATTTGGCAATGCAATTAGTTGCTGAATTTAGAGAGCTTGGCATCCAACCTGGACTCTCTGCTTATTATTATTTACTCTGCTTGTTCTGTAAAGAAAGAGGGCCCCGTAATAATATTCTATCGAAGATCCTCACTGATTTGGAGAGCAGAGAACGTTTAGAAGTGAATGAACCAACAGACACGAATTTCTTTATTACTGCAATGGGCGTGTGCAGTGACCATTTACAGTTTTAA

Protein

MYSNIVITRQISKIKCLCRSLVSIESQKTPQSGASSDGISPPVRIQRGPTDILQALSTTVGIDPTAAHYKYHDDPYLIPLSNYRKRAYALAAEAGRKAAIWIRDEHADLFTTRIWDPPLRKKTPYYNADPKIEAFSPKPIYNDESKVTEEDLIYTIQNALIEDSIKVYQLLGGSQGVSDELKLQLLQLLCFYNEKEPDSVEWLEERWFSANTRERQAATWRLGSLADTIFTSMEPKSPEAYCAIIQGMAKYYQAERAYELSQEAIEKGIPLSTGVYNALLGCIGFLREGATLRIEALKSTLMQMNEQGLSPNIETLSACLRSISVWGGGIQLQNLAMQLVAEFRELGIQPGLSAYYYLLCLFCKERGPRNNILSKILTDLESRERLEVNEPTDTNFFITAMGVCSDHLQF

Description

Mitochondrial protein that may have a role in mitochondrial translation.

Similarity

Belongs to the mitochondrion-specific ribosomal protein mS39 family.

Keywords

Complete proteome   Mitochondrion   Reference proteome   Ribonucleoprotein   Ribosomal protein   RNA-binding   rRNA-binding   Transit peptide   Translation regulation  

Feature

chain  Protein PTCD3 homolog, mitochondrial

Uniprot

A0A2H1V950   A0A2H1VAV0   A0A3S2PED3   A0A194Q8J9   A0A212FNY6   A0A194R4U4   + More
A0A2A4JMY8   A0A1S4FP34   A0A0K8VV57   Q16U28   A0A2M4AMM2   A0A034W768   A0A182Y0Q4   A0A2M4BGC1   A0A182SQ93   A0A2M4AKH2   A0A2M4ALH2   A0A2M3Z6D9   W5JUD5   A0A182F2W4   A0A182NBT0   A0A182G0J7   A0A182REW5   A0A182MSQ5   B4KLL4   Q7Q1I9   A0A182KU01   A0A182XNA6   A0A182TM41   A0A336M5V6   A0A182VGL7   A0A182PUI4   A0A336MAF5   A0A182HRV6   B3MGW3   A0A1B0AF90   A0A1I8MKR9   W8AZV6   A0A1B0GC82   A0A182J6R7   A0A182QET3   A0A0M4E8P4   B0XIM2   A0A1W4UAD8   A0A182KBR9   A0A1Q3FEI4   A0A3B0J3L8   A0A084WTY8   B4GCT1   A0A1A9V273   B5E091   A0A0A1XQS9   B4J5B7   A0A182WGK8   B4HQ35   B4P4K2   B4QE08   B4LLZ8   B3NRN5   A0A226EW06   A0A1W4X4P3   B4NLE1   A0A1Y1LFU0   A0A1A9YKW2   A0A2M4BHL6   A0A3R7M0A7   A0A0P4W2G5   A0A2J7RH86   D6WAL8   T2FGD8   A1Z9A8   A0A1J1IW38   A0A0L0BYK2   A0A1I8P7J9   A0A0T6BHU3   A0A067QP82   A0A1A9X4T6   A0A1B6HTV0   A0A1D2N5C1   A0A1E1XF47   A0A1B6G863   A0A131XEX3   A0A131YKZ7   A0A224Z4T3   L7MD05   A0A2R5LHZ5   A0A0K8R9M4   A0A1E1XRM2   J9JM04   A0A131Y211   A0A1B6I3M9   A0A0P4ZPS9   G3MK28   A0A1B6G380   A0A023GLS1   A0A0N8CN87   A0A164UB27   A0A0N8CPM0   A0A1B6E9B4  

Pubmed

26354079    22118469    17510324    25348373    25244985    20920257    + More
23761445    26483478    17994087    12364791    14747013    17210077    20966253    25315136    24495485    24438588    15632085    25830018    17550304    22936249    18057021    28004739    18362917    19820115    10731132    12537572    12537569    26108605    24845553    27289101    28503490    28049606    26830274    28797301    25576852    29209593    22216098   

EMBL

ODYU01001317    SOQ37347.1    ODYU01001316    SOQ37344.1    RSAL01000074    RVE48940.1    + More
KQ459299    KPJ01862.1    AGBW02004200    OWR55445.1    KQ460761    KPJ12534.1    NWSH01001018    PCG73088.1    GDHF01009565    JAI42749.1    CH477633    EAT38029.1    GGFK01008708    MBW42029.1    GAKP01008967    JAC49985.1    GGFJ01002968    MBW52109.1    GGFK01007968    MBW41289.1    GGFK01008261    MBW41582.1    GGFM01003313    MBW24064.1    ADMH02000466    ETN66364.1    JXUM01000181    KQ560102    KXJ84557.1    AXCM01003106    CH933808    EDW08650.1    AAAB01008980    EAA14480.4    UFQS01000603    UFQT01000603    SSX05285.1    SSX25646.1    UFQS01000665    UFQT01000665    SSX05952.1    SSX26311.1    APCN01001759    CH902619    EDV37881.1    GAMC01012190    JAB94365.1    CCAG010007825    AXCN02000689    CP012524    ALC41134.1    DS233330    EDS29446.1    GFDL01009123    JAV25922.1    OUUW01000001    SPP73893.1    ATLV01026965    KE525421    KFB53682.1    CH479181    EDW32494.1    CM000071    EDY69306.1    GBXI01000613    JAD13679.1    CH916367    EDW01759.1    CH480816    EDW47698.1    CM000158    EDW90641.1    CM000362    CM002911    EDX06902.1    KMY93454.1    CH940648    EDW59918.1    KRF79152.1    CH954179    EDV56187.1    LNIX01000002    OXA61021.1    CH964272    EDW84344.2    GEZM01061488    JAV70436.1    GGFJ01003408    MBW52549.1    QCYY01002563    ROT69434.1    GDRN01108499    GDRN01108498    JAI57230.1    NEVH01003746    PNF40199.1    KQ971312    EEZ97978.1    BT150278    AGV77180.1    AE013599    AY121671    CVRI01000063    CRL04320.1    JRES01001157    KNC25117.1    LJIG01000025    KRT86915.1    KK853097    KDR11430.1    GECU01029616    JAS78090.1    LJIJ01000207    ODN00431.1    GFAC01001323    JAT97865.1    GECZ01011306    JAS58463.1    GEFH01003913    JAP64668.1    GEDV01009966    JAP78591.1    GFPF01010447    MAA21593.1    GACK01003327    JAA61707.1    GGLE01005016    MBY09142.1    GADI01006235    JAA67573.1    GFAA01001521    JAU01914.1    ABLF02015958    GEFM01003284    JAP72512.1    GECU01026192    JAS81514.1    GDIP01222926    JAJ00476.1    JO842229    AEO33846.1    GECZ01012874    JAS56895.1    GBBM01000607    JAC34811.1    GDIP01115151    JAL88563.1    LRGB01001581    KZS11201.1    GDIP01111287    JAL92427.1    GEDC01002782    JAS34516.1   

Proteomes

UP000283053    UP000053268    UP000007151    UP000053240    UP000218220    UP000008820    + More
UP000076408    UP000075901    UP000000673    UP000069272    UP000075884    UP000069940    UP000249989    UP000075900    UP000075883    UP000009192    UP000007062    UP000075882    UP000076407    UP000075902    UP000075903    UP000075885    UP000075840    UP000007801    UP000092445    UP000095301    UP000092444    UP000075880    UP000075886    UP000092553    UP000002320    UP000192221    UP000075881    UP000268350    UP000030765    UP000008744    UP000078200    UP000001819    UP000001070    UP000075920    UP000001292    UP000002282    UP000000304    UP000008792    UP000008711    UP000198287    UP000192223    UP000007798    UP000092443    UP000283509    UP000235965    UP000007266    UP000000803    UP000183832    UP000037069    UP000095300    UP000027135    UP000091820    UP000094527    UP000007819    UP000076858   

PRIDE

A1Z9A8   

Pfam

PF17177   PPR_long        + More
PF13812   PPR_3
PF00732   GMC_oxred_N
PF05199   GMC_oxred_C
PF13041   PPR_2
PF01535   PPR

Interpro

IPR033443   PPR_long        + More
IPR016024   ARM-type_fold       
IPR011990   TPR-like_helical_dom_sf       
IPR037387   PTCD3       
IPR036508   Chitin-bd_dom_sf       
IPR002557   Chitin-bd_dom       
IPR002885   Pentatricopeptide_repeat       
IPR036188   FAD/NAD-bd_sf       
IPR000172   GMC_OxRdtase_N       
IPR007867   GMC_OxRtase_C       

SUPFAM

SSF48371   SSF48371        + More
SSF57625   SSF57625       
SSF51905   SSF51905       

Gene 3D

1.25.40.10     3.50.50.60    

ProteinModelPortal

A0A2H1V950   A0A2H1VAV0   A0A3S2PED3   A0A194Q8J9   A0A212FNY6   A0A194R4U4   + More
A0A2A4JMY8   A0A1S4FP34   A0A0K8VV57   Q16U28   A0A2M4AMM2   A0A034W768   A0A182Y0Q4   A0A2M4BGC1   A0A182SQ93   A0A2M4AKH2   A0A2M4ALH2   A0A2M3Z6D9   W5JUD5   A0A182F2W4   A0A182NBT0   A0A182G0J7   A0A182REW5   A0A182MSQ5   B4KLL4   Q7Q1I9   A0A182KU01   A0A182XNA6   A0A182TM41   A0A336M5V6   A0A182VGL7   A0A182PUI4   A0A336MAF5   A0A182HRV6   B3MGW3   A0A1B0AF90   A0A1I8MKR9   W8AZV6   A0A1B0GC82   A0A182J6R7   A0A182QET3   A0A0M4E8P4   B0XIM2   A0A1W4UAD8   A0A182KBR9   A0A1Q3FEI4   A0A3B0J3L8   A0A084WTY8   B4GCT1   A0A1A9V273   B5E091   A0A0A1XQS9   B4J5B7   A0A182WGK8   B4HQ35   B4P4K2   B4QE08   B4LLZ8   B3NRN5   A0A226EW06   A0A1W4X4P3   B4NLE1   A0A1Y1LFU0   A0A1A9YKW2   A0A2M4BHL6   A0A3R7M0A7   A0A0P4W2G5   A0A2J7RH86   D6WAL8   T2FGD8   A1Z9A8   A0A1J1IW38   A0A0L0BYK2   A0A1I8P7J9   A0A0T6BHU3   A0A067QP82   A0A1A9X4T6   A0A1B6HTV0   A0A1D2N5C1   A0A1E1XF47   A0A1B6G863   A0A131XEX3   A0A131YKZ7   A0A224Z4T3   L7MD05   A0A2R5LHZ5   A0A0K8R9M4   A0A1E1XRM2   J9JM04   A0A131Y211   A0A1B6I3M9   A0A0P4ZPS9   G3MK28   A0A1B6G380   A0A023GLS1   A0A0N8CN87   A0A164UB27   A0A0N8CPM0   A0A1B6E9B4  

PDB

6GAW     E-value=1.0961e-32,     Score=350

KEGG

101744266    K17659 pentatricopeptide repeat domain-containing protein 3 | (RefSeq) protein PTCD3 homolog, mitoch

GO

GO:0005739   GO:0043024   GO:0019843   GO:0032543   GO:0006030   GO:0008061   GO:0005576   GO:0005840   GO:0006417   GO:0016614   GO:0050660   GO:0005515  

PANTHER

PTHR16276  

Subcellular location

Mitochondrion  

Length:

410

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.31221

Exp number, first 60 AAs:

0.00026

Total prob of N-in:

0.02545

outside

1  -  410

 

 

Pi

288.431147

Theta

221.021597

Tajima's D

1.245778

CLR

0

CSRT

0.727613619319034

Interpretation

Uncertain