SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO07973
Pre Gene Modal
BGIBMGA001000
Annotation
achaete-scute-like_protein_ASH3_[Bombyx_mori]
Transcription factor
Location in the cell
Nuclear   Reliability : 2.926
 

Sequence

CDS
ATGGTGGCAATCGCACCGGCACCTGAAACTCGATTAACATTAGAGTTGGAACCAAAAAAATATAATTACAAGAACTGCAGCCACAACGGAACTCAAGCTGCTTCGATTGCAAGAAGAAACGCCAGGGAAAGGAACCGTGTGAAACAAGTGAACGATGGATTCAACGCGTTGAGGAAAAGACTGCCTGCCGCAGTCGTAGCCGCATTATCCGGAGGCGCGAGACGTGGTTCCGGGAAGAAACTCAGCAAAGTAGACACACTACGAATGGTCGTCGAATATATAAGGTATTTACAAAATATGATTGACGAAAGCGATGCAGCGCTTGGCATTCCGAAGCAGCCTTCGATAGACTTATCGACGATCAGCTATGAAGCGGATGATGGTGTCTTCGAAAGGAGTTCTCCATATACGGACTCCGTTCCTTCACCGGCGGGCTCTGAAAGCTCTTCAGGCGTGTCATCAAACTATTCACAAGGCTACATTCCAAATTTTCAAATCGAAGAACAAATAACTCCAATGGATGACGACCTACTTAATACTATCTCGTGGTGGCAAGAAAAGTGA
Protein
MVAIAPAPETRLTLELEPKKYNYKNCSHNGTQAASIARRNARERNRVKQVNDGFNALRKRLPAAVVAALSGGARRGSGKKLSKVDTLRMVVEYIRYLQNMIDESDAALGIPKQPSIDLSTISYEADDGVFERSSPYTDSVPSPAGSESSSGVSSNYSQGYIPNFQIEEQITPMDDDLLNTISWWQEK

Summary

Pfam
PF00010   HLH
Interpro
IPR036638   HLH_DNA-bd_sf        + More
IPR011598   bHLH_dom       
IPR015660   MASH1/Ascl1a-like       
SUPFAM
SSF47459   SSF47459       
Gene 3D

Ontologies

Topology

Length:
187
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.0082
Exp number, first 60 AAs:
0.00085
Total prob of N-in:
0.05162
outside
1  -  187
 
 

Population Genetic Test Statistics

Pi
30.55046
Theta
26.257072
Tajima's D
0.37804
CLR
0.657312
CSRT
0.478326083695815
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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