Gene

KWMTBOMO07973

Pre Gene Modal

BGIBMGA001000

Annotation

achaete-scute-like_protein_ASH3_[Bombyx_mori]

Location

Bomo_Chr13(+):11458179-11458898      View in EpiBrowser

Transcription factor

bHLH

Location in the cell

Nuclear   Reliability : 2.926

CDS

ATGGTGGCAATCGCACCGGCACCTGAAACTCGATTAACATTAGAGTTGGAACCAAAAAAATATAATTACAAGAACTGCAGCCACAACGGAACTCAAGCTGCTTCGATTGCAAGAAGAAACGCCAGGGAAAGGAACCGTGTGAAACAAGTGAACGATGGATTCAACGCGTTGAGGAAAAGACTGCCTGCCGCAGTCGTAGCCGCATTATCCGGAGGCGCGAGACGTGGTTCCGGGAAGAAACTCAGCAAAGTAGACACACTACGAATGGTCGTCGAATATATAAGGTATTTACAAAATATGATTGACGAAAGCGATGCAGCGCTTGGCATTCCGAAGCAGCCTTCGATAGACTTATCGACGATCAGCTATGAAGCGGATGATGGTGTCTTCGAAAGGAGTTCTCCATATACGGACTCCGTTCCTTCACCGGCGGGCTCTGAAAGCTCTTCAGGCGTGTCATCAAACTATTCACAAGGCTACATTCCAAATTTTCAAATCGAAGAACAAATAACTCCAATGGATGACGACCTACTTAATACTATCTCGTGGTGGCAAGAAAAGTGA

Protein

MVAIAPAPETRLTLELEPKKYNYKNCSHNGTQAASIARRNARERNRVKQVNDGFNALRKRLPAAVVAALSGGARRGSGKKLSKVDTLRMVVEYIRYLQNMIDESDAALGIPKQPSIDLSTISYEADDGVFERSSPYTDSVPSPAGSESSSGVSSNYSQGYIPNFQIEEQITPMDDDLLNTISWWQEK

Uniprot

H9IUS0   A6N868   A0A2A4J920   A0A2H1VME4   A0A0M4F949   A0A194R4E4   + More
A0A194QA55   A0A212ENG6   A0A194R9L4   A0A0H3UYT4   O76488   A0A2A4J938   A0A0L7KWQ5   A0A194Q8Y4   A0A2H1VLD1   A6N867   A0A0L7L1B7   A0A212ENF6   A0A0P6FRG6   A0A182GS63   Q174P2   H9IUS1   Q2I1Z2   A0A212ENE2  

Pubmed

19121390    18321391    26354079    22118469    9663389    26227816    + More
26483478    17510324    16773336   

EMBL

BABH01000608    EF620928    ABR20840.1    NWSH01002585    PCG67912.1    ODYU01003190    + More
SOQ41612.1    KP245732    ALC76152.1    KQ460761    KPJ12547.1    KQ459299    KPJ01875.1    AGBW02013662    OWR43023.1    KPJ12546.1    KJ158243    AIZ67913.1    AF071498    AAC24714.1    PCG67913.1    JTDY01004860    KOB67667.1    KPJ01874.1    SOQ41611.1    BABH01000604    EF620927    ABR20839.1    JTDY01003591    KOB69293.1    OWR43024.1    GDIQ01045359    JAN49378.1    JXUM01085146    KQ563483    KXJ73762.1    CH477407    EAT41556.1    BABH01000596    DQ350889    DQ350890    ABC84346.1    ABC84347.1    OWR43025.1   

Proteomes

UP000005204    UP000218220    UP000053240    UP000053268    UP000007151    UP000037510    + More
UP000069940    UP000249989    UP000008820   

PRIDE

H9IUS0    A6N868    A6N867    H9IUS1    Q2I1Z2   

Pfam

PF00010   HLH

Interpro

IPR036638   HLH_DNA-bd_sf        + More
IPR011598   bHLH_dom       
IPR015660   MASH1/Ascl1a-like       

SUPFAM

SSF47459   SSF47459       

Gene 3D

4.10.280.10    

CDD

cd00083  HLH

ProteinModelPortal

H9IUS0   A6N868   A0A2A4J920   A0A2H1VME4   A0A0M4F949   A0A194R4E4   + More
A0A194QA55   A0A212ENG6   A0A194R9L4   A0A0H3UYT4   O76488   A0A2A4J938   A0A0L7KWQ5   A0A194Q8Y4   A0A2H1VLD1   A6N867   A0A0L7L1B7   A0A212ENF6   A0A0P6FRG6   A0A182GS63   Q174P2   H9IUS1   Q2I1Z2   A0A212ENE2  

KEGG

100125604    K09067 achaete-scute complex protein | (RefSeq) Ash3; achaete-scute-like protein ASH3

GO

GO:0006357   GO:0046983   GO:0003677   GO:0005643   GO:0016616   GO:0016491   GO:0019752   GO:0006427   GO:0016020   GO:0006412   GO:0016876   GO:0043039  

PANTHER

PTHR13935  

Length:

187

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0082

Exp number, first 60 AAs:

0.00085

Total prob of N-in:

0.05162

outside

1  -  187

 

 

Pi

30.55046

Theta

26.257072

Tajima's D

0.37804

CLR

0.657312

CSRT

0.478326083695815

Interpretation

Uncertain