SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO07955
Pre Gene Modal
BGIBMGA001157
Annotation
PREDICTED:_LIM_domain_only_protein_3_isoform_X1_[Amyelois_transitella]
Location in the cell
Extracellular   Reliability : 1.607 Nuclear   Reliability : 2.291
 

Sequence

CDS
ATGCTGGCCATGGACGTTACGAAGGAAGCACGTTCGTCTCCCCTACCAGCTACATCGCAGGCAACGACTGTAACATCTGCACAGAATCCTCCTCAACCACAGATATGCGCTGGGTGCAGCAAAGTGATCACCGAGCGGTATCTCTTGAAGGCTTTGGATCAACTGTGGCACGAGGACTGTTTGAAGTGCGGCTGCTGCGACTGCCGACTCGGGGAGGTTGGCCACACTCTGTACACGCGCGCCAACCTAATTCTCTGCAAGAGAGATTATTTGAGGTTATTCGGCAATACTGGATACTGTGCTGCTTGTAATAAAGTGATCCCCGCGTTCGAAATGGTGATGAGGGCTCGCAGTAACGTCTATCATCTGGAATGTTTCGCTTGCCAACAGTGCAACCACAGATTTTGTGTGGGCGATCGATTCTATTTATGCGAAAATAAGATTCTCTGCGAGTACGATTACGAAGAGAGGCTGGTTTTCGCAAACATGGCGTACAATCCACCACCGCTGGCACATCTCAAGCGACAGACTACGCATTTGCCTCCACCTCCGACGAGCGGTGCGATGGGCGGCCTCATGAACGGGTCAGGTCGTTCCGGCGACATGAACAACAACATGTCCGGTTCGTCTCCGGCTCCGTTTGCTGCCCCCCCGCACCTCAAGCCCCTGGGCCTCTCGGCGACTAGCTGA
Protein
MLAMDVTKEARSSPLPATSQATTVTSAQNPPQPQICAGCSKVITERYLLKALDQLWHEDCLKCGCCDCRLGEVGHTLYTRANLILCKRDYLRLFGNTGYCAACNKVIPAFEMVMRARSNVYHLECFACQQCNHRFCVGDRFYLCENKILCEYDYEERLVFANMAYNPPPLAHLKRQTTHLPPPPTSGAMGGLMNGSGRSGDMNNNMSGSSPAPFAAPPHLKPLGLSATS

Summary

Pfam
PF00412   LIM
Interpro
IPR001781   Znf_LIM       
PDB
4KFZ     E-value=1.71085e-37,     Score=388

Ontologies

Topology

Length:
229
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.11923
Exp number, first 60 AAs:
0
Total prob of N-in:
0.08187
outside
1  -  229
 
 

Population Genetic Test Statistics

Pi
220.436532
Theta
178.316016
Tajima's D
0.29182
CLR
0.508188
CSRT
0.449377531123444
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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