Gene

KWMTBOMO07955

Pre Gene Modal

BGIBMGA001157

Annotation

PREDICTED:_LIM_domain_only_protein_3_isoform_X1_[Amyelois_transitella]

Location

Bomo_Chr13(-):11099751-11166669      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 1.607 Nuclear   Reliability : 2.291

CDS

ATGCTGGCCATGGACGTTACGAAGGAAGCACGTTCGTCTCCCCTACCAGCTACATCGCAGGCAACGACTGTAACATCTGCACAGAATCCTCCTCAACCACAGATATGCGCTGGGTGCAGCAAAGTGATCACCGAGCGGTATCTCTTGAAGGCTTTGGATCAACTGTGGCACGAGGACTGTTTGAAGTGCGGCTGCTGCGACTGCCGACTCGGGGAGGTTGGCCACACTCTGTACACGCGCGCCAACCTAATTCTCTGCAAGAGAGATTATTTGAGGTTATTCGGCAATACTGGATACTGTGCTGCTTGTAATAAAGTGATCCCCGCGTTCGAAATGGTGATGAGGGCTCGCAGTAACGTCTATCATCTGGAATGTTTCGCTTGCCAACAGTGCAACCACAGATTTTGTGTGGGCGATCGATTCTATTTATGCGAAAATAAGATTCTCTGCGAGTACGATTACGAAGAGAGGCTGGTTTTCGCAAACATGGCGTACAATCCACCACCGCTGGCACATCTCAAGCGACAGACTACGCATTTGCCTCCACCTCCGACGAGCGGTGCGATGGGCGGCCTCATGAACGGGTCAGGTCGTTCCGGCGACATGAACAACAACATGTCCGGTTCGTCTCCGGCTCCGTTTGCTGCCCCCCCGCACCTCAAGCCCCTGGGCCTCTCGGCGACTAGCTGA

Protein

MLAMDVTKEARSSPLPATSQATTVTSAQNPPQPQICAGCSKVITERYLLKALDQLWHEDCLKCGCCDCRLGEVGHTLYTRANLILCKRDYLRLFGNTGYCAACNKVIPAFEMVMRARSNVYHLECFACQQCNHRFCVGDRFYLCENKILCEYDYEERLVFANMAYNPPPLAHLKRQTTHLPPPPTSGAMGGLMNGSGRSGDMNNNMSGSSPAPFAAPPHLKPLGLSATS

Uniprot

Q2F5Q2   A0A194R4G4   A0A212FA18   H9IV77   A0A194QA69   A0A2A4JYF4   + More
A0A3S2LKY6   A0A2H1V648   A0A1Y1MSW3   D2A3G5   A0A1W4XCR0   A0A158P2D7   A0A151IFA2   A0A3L8D761   A0A151XBV1   A0A0C9R6A6   A0A0C9QX42   K7IZB3   A0A232EH39   J9JQV5   A0A2S2QK41   A0A1L8DI87   A0A1J1HRD2   A0A1B0CUW1  

Pubmed

26354079    22118469    19121390    28004739    18362917    19820115    + More
21347285    30249741    20075255    28648823   

EMBL

DQ311371    ABD36315.1    KQ460761    KPJ12562.1    AGBW02009529    OWR50574.1    + More
BABH01000645    KQ459299    KPJ01890.1    NWSH01000379    PCG76839.1    RSAL01000074    RVE48916.1    ODYU01000865    SOQ36269.1    GEZM01025133    GEZM01025132    JAV87570.1    KQ971338    EFA01915.2    ADTU01001169    ADTU01001170    ADTU01001171    ADTU01001172    ADTU01001173    ADTU01001174    KQ977799    KYM99591.1    QOIP01000012    RLU16327.1    KQ982315    KYQ57866.1    GBYB01008332    JAG78099.1    GBYB01008329    JAG78096.1    NNAY01004588    OXU17687.1    ABLF02029494    ABLF02029497    GGMS01008850    MBY78053.1    GFDF01007953    JAV06131.1    CVRI01000020    CRK90531.1    AJWK01029702    AJWK01029703    AJWK01029704    AJWK01029705   

Proteomes

UP000053240    UP000007151    UP000005204    UP000053268    UP000218220    UP000283053    + More
UP000007266    UP000192223    UP000005205    UP000078542    UP000279307    UP000075809    UP000002358    UP000215335    UP000007819    UP000183832    UP000092461   

PRIDE

Q2F5Q2    H9IV77   

Pfam

PF00412   LIM

Interpro

IPR001781   Znf_LIM       

ProteinModelPortal

Q2F5Q2   A0A194R4G4   A0A212FA18   H9IV77   A0A194QA69   A0A2A4JYF4   + More
A0A3S2LKY6   A0A2H1V648   A0A1Y1MSW3   D2A3G5   A0A1W4XCR0   A0A158P2D7   A0A151IFA2   A0A3L8D761   A0A151XBV1   A0A0C9R6A6   A0A0C9QX42   K7IZB3   A0A232EH39   J9JQV5   A0A2S2QK41   A0A1L8DI87   A0A1J1HRD2   A0A1B0CUW1  

PDB

4KFZ     E-value=1.71085e-37,     Score=388

KEGG

692949    no KO assigned | (RefSeq) beadex/dLMO protein

GO

GO:0046872   GO:0008270   GO:0006508   GO:0005524   GO:0006418   GO:0004821   GO:0006427   GO:0016020   GO:0006412   GO:0016876   GO:0043039  

Length:

229

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.11923

Exp number, first 60 AAs:

0

Total prob of N-in:

0.08187

outside

1  -  229

 

 

Pi

220.436532

Theta

178.316016

Tajima's D

0.29182

CLR

0.508188

CSRT

0.449377531123444

Interpretation

Uncertain