Gene

KWMTBOMO07952

Annotation

PREDICTED:_histidine--tRNA_ligase?_cytoplasmic_[Bombyx_mori]

Location

Bomo_Chr13(+):10883805-10890859      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 3.439

CDS

ATGGCAGATTCTCAGGAAGATTTATTATTGAAAATTCAAGAACAGGGTGATCTTGTTAGAAAATTAAAAGCAGCGAAGGATTCCAATGAGAGGGTTAAAGAAGAAGTATCAAAGTTGTTGGCTTTAAAGGCTCAACTTGTAACAGAAGATGCAGGCCCACAAAAGTTTACTCTTAAAACACCAAAGGGAACAAGAGACTACAACCCACAGCAAATGACAATACGTAATAATGTATTGGATAAAATTATTACAGTTTTTAGGAGACACGGAGCTGAGTGTATTGATACACCTGTTTTTGAGCTAAAGGATGTGCTTACTGGGAAGTATGGTGAGGATTCAAAATTAATATATGATTTGAAAGACCAAGGTGGGGAAATTCTTTCATTAAGATATGATTTGACTGTACCTTTGGCTCGGTATTTAGCAATGAATAAAATAACTACTTTAAAGAGATATCATATAGCTAAGGTGTACAGAAGAGACAATCCTGCCATGACTAGAGGAAGATACAGGGAATTTTATCAATGCGACTTTGACATAGCTGGTATATATGATCCTATGGTACCTGATGCAGAATGCTTGAAGGTAGTGACAGAGATCCTAGAGGCTCTTGACATAGGACAATATATCCTCAAAGTGAACCACAGAAGATTACTTGATGGAATGTTTGAAGCTTGTGGAGTTCCCGCAGATAAGTTTAGGACCACATGCTCCACAGTTGATAAACTAGATAAGTCACCATGGGAGGAAGTAAGAACCGAAATGATTAATGAAAAAGGTGTGTCACCTGATGCAGCAGACAGAATTGGAGAGTATGTACGCTTAAACGGTAGCACGGAACTGGTAGAGAAACTATTGAAAGATGAGAAATTATCTAAAGTAAAGGCTGCATTAGAAGGTGTAGAAGCAATCAAAACTTTGCTACAGTATTGTGAACTCTTTGGCATTAAGGATAAGATTCTGTTTGATTTGAGTCTTGCCAGAGGATTAGATTATTACACTGGTGTTATCTATGAAGCAGTGCTTACACAACCTATTAAAATTGGAAATGAGGAACAAACGGTTGGATCCATCGCTGGCGGCGGAAGATACGATAACCTCGTCGGCATGTTTGACTCAAAAAACAAACAGGTGCCATGTGTAGGTGTGAGTATTGGCGTTGAGCGTATATTCTCGGTACTGGAAGCGAAACTCGCCGCCGGTGACATAACGGTTCGCACAAGCGACATTGACGTGTATGTAGCGTCAGCACAAAAGAACTTCCTAGAGGAGCGCATGAAAATATGCGCTGAACTGTGGGATGCTGGGATCAAGACCGAGCAGTCGTACAAGAAGAATCCCAAGATGCTGAACCAGCTTCAGCATTGTGAAGAAAACAAAATACCACTAGCGGTCGTGTTGGGCGATTCCGAACTTAAACGGGGCGTTGTCAAAATAAGAAACATTACGACTAGAGAAGAGGACGAAGTGCCCAGAAACGATCTGGTTCAAGAAATAAAGAAACGTATTGACAACTTGAATCTTAATCAATTGAATGGAGCAACATAA

Protein

MADSQEDLLLKIQEQGDLVRKLKAAKDSNERVKEEVSKLLALKAQLVTEDAGPQKFTLKTPKGTRDYNPQQMTIRNNVLDKIITVFRRHGAECIDTPVFELKDVLTGKYGEDSKLIYDLKDQGGEILSLRYDLTVPLARYLAMNKITTLKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGIYDPMVPDAECLKVVTEILEALDIGQYILKVNHRRLLDGMFEACGVPADKFRTTCSTVDKLDKSPWEEVRTEMINEKGVSPDAADRIGEYVRLNGSTELVEKLLKDEKLSKVKAALEGVEAIKTLLQYCELFGIKDKILFDLSLARGLDYYTGVIYEAVLTQPIKIGNEEQTVGSIAGGGRYDNLVGMFDSKNKQVPCVGVSIGVERIFSVLEAKLAAGDITVRTSDIDVYVASAQKNFLEERMKICAELWDAGIKTEQSYKKNPKMLNQLQHCEENKIPLAVVLGDSELKRGVVKIRNITTREEDEVPRNDLVQEIKKRIDNLNLNQLNGAT

Uniprot

A0A2A4JWG9   A0A3S2LFC2   A0A2A4JW78   A0A2A4JUQ6   A0A2H1VZS8   A0A194Q8Z9   + More
A0A194R9N9   A0A212FA26   A0A1Y1NH24   A0A0P9AAV5   Q9VWT1   B3NTF4   A0A1B0CUV9   U4UBE7   J3JXU9   S4PSC3   B4Q2Z8   A0A1W4UQL5   D2A142   N6TMV0   T1PA45   B4K1F8   A0A1L8DRZ0   A0A1L8DS50   A0A1L8DRU3   A0A1I8MHP7   B4L3M6   A0A3B0JX32   W8AZA6   B4MD71   Q29G09   A0A034WHJ1   A0A0A1WK64   A0A0K8V6E7   A0A1I8NQF2   B3MWQ0   Q8IQX8   A0A0Q5T469   B4R707   B4JJ46   A0A0L0CGM7   A0A0M4EGR6   A0A1W4US50   A0A0Q9WY89   A0A1S3HMK0   A0A0Q9W8B8   A0A0T6B7T1   A0A0N8NZV8   A0A0R3P1P1   V4AAJ6   A0A1B0DR88   M9PHI2   B4NQ27   A0A0Q5T3X5   A0A336KFP6   A0A1L8GX00   A0A1L8DRL0   A0A0R1ECG1   A0A1W4UQC7   Q6DFI9   A0A1I8MHP9   A0A067R543   A0A0Q9WZN1   W8B6B6   Q17JC2   A0A1I8NQF5   K9ILN6   A0A0Q9VZR2   A0A034WFZ7   K1P8Z2   A0A2T7PNG9   A0A3B4GL77   A0A0K8V6E3   A0A0A1XSE4   A0A1B6EAR5   A0A3B3TKR7   A0A3P8NXL6   A0A1S3HQH9   W5MZF6   A0A1W4YAN7   A0A3P8X955   L5JXP7   A0A1S2ZD68   A0A1B0BQI6   A0A0R3P1Q7   A0A1A9V0I5   A0A3Q1AW28   A0A3P8RWH4   A0A3Q7MLZ7   M3VWD2   A0A3P8UR89   A0A2Y9I0Y1   A0A2U3XJ74   A0A2Y9IN26   A0A1A9YHG9   A0A3B5QIL3   I3K099   A0A3Q7V0Z3   G9K3U0   D2GUN4  

Pubmed

26354079    22118469    28004739    17994087    10731132    12537568    + More
12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    23537049    22516182    23622113    17550304    18362917    19820115    25315136    24495485    15632085    25348373    25830018    26108605    23254933    27762356    24845553    17510324    22992520    25069045    23258410    17975172    24487278    23542700    25186727    23236062    20010809   

EMBL

NWSH01000547    PCG75740.1    RSAL01000021    RVE52530.1    PCG75743.1    PCG75741.1    + More
ODYU01005447    SOQ46318.1    KQ459299    KPJ01894.1    KQ460761    KPJ12566.1    AGBW02009529    OWR50578.1    GEZM01002635    JAV97192.1    CH902625    KPU75403.1    AE014298    AY102665    AAF48856.1    AAM27494.1    CH954180    EDV46605.1    AJWK01029696    KB632278    ERL91254.1    BT128071    AEE63032.1    GAIX01013983    JAA78577.1    CM000162    EDX02732.1    KQ971338    EFA02605.2    APGK01029087    KB740724    ENN79358.1    KA645651    AFP60280.1    CH917244    EDW04530.1    GFDF01004875    JAV09209.1    GFDF01004877    JAV09207.1    GFDF01004876    JAV09208.1    CH933810    EDW07154.1    OUUW01000003    SPP77916.1    GAMC01012414    GAMC01012412    GAMC01012410    JAB94145.1    CH940660    EDW58143.1    CH379065    EAL31420.1    GAKP01005332    JAC53620.1    GBXI01015387    JAC98904.1    GDHF01017805    JAI34509.1    EDV35035.2    AAN09471.2    KQS30061.1    CM000366    EDX18303.1    CH916370    EDV99598.1    JRES01000427    KNC31381.1    CP012524    ALC41647.1    KRF93945.1    KRF78145.1    LJIG01009281    KRT83394.1    KPU75404.1    KRT07144.1    KB201890    ESO93792.1    AJVK01008969    AJVK01008970    AJVK01008971    AGB95527.1    AGB95528.1    CH964291    EDW86252.1    KQS30060.1    UFQS01000114    UFQT01000114    SSW99880.1    SSX20260.1    CM004470    OCT88372.1    GFDF01004966    JAV09118.1    KRK06943.1    BC076748    AAH76748.1    KK852964    KDR13182.1    KRF93946.1    GAMC01012413    JAB94142.1    CH477233    EAT46782.1    GABZ01005633    JAA47892.1    KRF78146.1    GAKP01005333    JAC53619.1    JH818454    EKC20207.1    PZQS01000003    PVD34974.1    GDHF01017873    JAI34441.1    GBXI01000063    JAD14229.1    GEDC01002262    JAS35036.1    AHAT01005343    AHAT01005344    AHAT01005345    KB031114    ELK03008.1    JXJN01018636    JXJN01018637    KRT07145.1    AANG04002524    AERX01033470    AERX01033471    AERX01033472    JP010967    AER99564.1    ACTA01120719    ACTA01128719    GL192344    EFB21005.1   

Proteomes

UP000218220    UP000283053    UP000053268    UP000053240    UP000007151    UP000007801    + More
UP000000803    UP000008711    UP000092461    UP000030742    UP000002282    UP000192221    UP000007266    UP000019118    UP000001070    UP000095301    UP000009192    UP000268350    UP000008792    UP000001819    UP000095300    UP000000304    UP000037069    UP000092553    UP000085678    UP000030746    UP000092462    UP000007798    UP000186698    UP000027135    UP000008820    UP000005408    UP000245119    UP000261460    UP000261500    UP000265100    UP000018468    UP000192224    UP000265140    UP000010552    UP000079721    UP000092460    UP000078200    UP000257160    UP000265080    UP000286641    UP000011712    UP000265120    UP000248481    UP000245341    UP000248482    UP000092443    UP000002852    UP000005207    UP000286640    UP000008912   

PRIDE

Q8IQX8   

Pfam

PF13393   tRNA-synt_His        + More
PF03129   HGTP_anticodon
PF00458   WHEP-TRS
PF04124   Dor1

Interpro

IPR000738   WHEP-TRS_dom        + More
IPR009068   S15_NS1_RNA-bd       
IPR041715   HisRS-like_core       
IPR036621   Anticodon-bd_dom_sf       
IPR033656   HisRS_anticodon       
IPR004516   HisRS/HisZ       
IPR004154   Anticodon-bd       
IPR006195   aa-tRNA-synth_II       
IPR015807   His-tRNA-ligase       
IPR036282   Glutathione-S-Trfase_C_sf       
IPR016159   Cullin_repeat-like_dom_sf       
IPR007255   COG8       

SUPFAM

SSF47060   SSF47060        + More
SSF47616   SSF47616       
SSF74788   SSF74788       

Gene 3D

3.40.50.800    

CDD

cd00859  HisRS_anticodon
cd00773  HisRS-like_core

ProteinModelPortal

A0A2A4JWG9   A0A3S2LFC2   A0A2A4JW78   A0A2A4JUQ6   A0A2H1VZS8   A0A194Q8Z9   + More
A0A194R9N9   A0A212FA26   A0A1Y1NH24   A0A0P9AAV5   Q9VWT1   B3NTF4   A0A1B0CUV9   U4UBE7   J3JXU9   S4PSC3   B4Q2Z8   A0A1W4UQL5   D2A142   N6TMV0   T1PA45   B4K1F8   A0A1L8DRZ0   A0A1L8DS50   A0A1L8DRU3   A0A1I8MHP7   B4L3M6   A0A3B0JX32   W8AZA6   B4MD71   Q29G09   A0A034WHJ1   A0A0A1WK64   A0A0K8V6E7   A0A1I8NQF2   B3MWQ0   Q8IQX8   A0A0Q5T469   B4R707   B4JJ46   A0A0L0CGM7   A0A0M4EGR6   A0A1W4US50   A0A0Q9WY89   A0A1S3HMK0   A0A0Q9W8B8   A0A0T6B7T1   A0A0N8NZV8   A0A0R3P1P1   V4AAJ6   A0A1B0DR88   M9PHI2   B4NQ27   A0A0Q5T3X5   A0A336KFP6   A0A1L8GX00   A0A1L8DRL0   A0A0R1ECG1   A0A1W4UQC7   Q6DFI9   A0A1I8MHP9   A0A067R543   A0A0Q9WZN1   W8B6B6   Q17JC2   A0A1I8NQF5   K9ILN6   A0A0Q9VZR2   A0A034WFZ7   K1P8Z2   A0A2T7PNG9   A0A3B4GL77   A0A0K8V6E3   A0A0A1XSE4   A0A1B6EAR5   A0A3B3TKR7   A0A3P8NXL6   A0A1S3HQH9   W5MZF6   A0A1W4YAN7   A0A3P8X955   L5JXP7   A0A1S2ZD68   A0A1B0BQI6   A0A0R3P1Q7   A0A1A9V0I5   A0A3Q1AW28   A0A3P8RWH4   A0A3Q7MLZ7   M3VWD2   A0A3P8UR89   A0A2Y9I0Y1   A0A2U3XJ74   A0A2Y9IN26   A0A1A9YHG9   A0A3B5QIL3   I3K099   A0A3Q7V0Z3   G9K3U0   D2GUN4  

PDB

4X5O     E-value=0,     Score=1649

KEGG

101743685    K01892 histidyl-tRNA synthetase [EC:6.1.1.21] | (RefSeq) histidine--tRNA ligase, cytoplasmic

PATHWAY

00970    Aminoacyl-tRNA biosynthesis - Bombyx mori (domestic silkworm)

GO

GO:0005524   GO:0004821   GO:0006427   GO:0005737   GO:0006418   GO:0004812   GO:0005829   GO:0005739   GO:0017119   GO:0032543   GO:0016301   GO:0042802   GO:1901342   GO:0002040   GO:0016874   GO:0016020   GO:0006412   GO:0016876   GO:0043039  

Length:

515

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00061

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00048

outside

1  -  515

 

 

Pi

249.363449

Theta

196.892676

Tajima's D

0.632465

CLR

163.604428

CSRT

0.549472526373681

Interpretation

Uncertain