Gene

KWMTBOMO07951  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA001159

Annotation

PREDICTED:_vacuolar_protein-sorting-associated_protein_36_[Papilio_xuthus]

Location

Bomo_Chr13(-):10878781-10882504      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.855

CDS

ATGGACAGATTTGAGTATATCGAGGCAAGATTATTCGATGGAGAAAACTATTTAAAACGAGACAAAAATGTTAAAATTTACGATGGTGACGATAAGACCCAGTTCATTGATGGTGAAGTTCTATTAACAACACATAGACTTCTATGGGGAAAACCAGGAGATATACCAAAAGGCTTAGTTTGTTTATCTCTCCATCTGTATTATGTGTTTTGTTTAGAAGAAGAAAGTGGTGGCGTATTTGGTCTTGGGGGTCCAAAAAGAATAATAATGCATTTAGGTCCTGCACTGCCAGGGAAAAGGCCTGGTCCAGCAGTAGTGAGCCCATTTCACTATGTGAAACTATCATTCAAAGATGGAGTAGATACTGCTTTTTACAAAGCTTTAAGTGACGCTGTTGCTGCCAAAGCTTGGGAAAGACAAACTCCAATTGACACTCCGAGAACAGCTACAAGCCCAACAACGGCCTCAAGACCCACAGTCACAGCTGTAAACTCTAAGATTAGGTCAGGCATTGTAGGAATTGAAAGAAGTATAGAAGAACAGCATAGAGCCACAGATCAGAGTATAAGTGTGGCGTTTCAAGACCTCACTAAGTTAATGGAGAAGGCAAAAGAAATGGTATCTTTATCAAAGAATATTTCTACAAAAATAAGGGAAAAACAAGGTGATATTTCAGAAGATGATACAGTTAGATTCAAATCCTACCTCATGAGCTTAGGTATAGATGATCCAGTAACTAGGGATGCATTCAGATCAGACTCTGAATACTATTTGGGTCTTGCACAACAAGTATCAGATATGATGGTTGCTGTGTTATTGGAGTGTGGTGGAATAATGTCCTTAGCTGATGTATGGTGTAGAGTAAACCGAGCCAGGGGCTTAGAGCTTGTATCGCCAGAAGACTTATTGAATGCTTGCAAATTACTACGAACTGTAGACGCTCCCATGTCACTCCGAAAATTCCCTAGTGGAGCTTGTGTCTTACAGCTGAATAGCAACAGGGATGAAGAGATTGCTAAATCTACAAGTGATATGATACAAGAAAATGGATACCTTACACCAGAGAAGCTATCGCAAATCGCAAATGTATCAGTCTTGTTGGCGAGAGAGAGACTATTTACTACGGAAAGACTTGGCTTGGCGTGCCGTGACGAGTCAATTGAAGGCTTGGCTTTTTACCCCAACAGATTTTTGTTAGAGGCCTAA

Protein

MDRFEYIEARLFDGENYLKRDKNVKIYDGDDKTQFIDGEVLLTTHRLLWGKPGDIPKGLVCLSLHLYYVFCLEEESGGVFGLGGPKRIIMHLGPALPGKRPGPAVVSPFHYVKLSFKDGVDTAFYKALSDAVAAKAWERQTPIDTPRTATSPTTASRPTVTAVNSKIRSGIVGIERSIEEQHRATDQSISVAFQDLTKLMEKAKEMVSLSKNISTKIREKQGDISEDDTVRFKSYLMSLGIDDPVTRDAFRSDSEYYLGLAQQVSDMMVAVLLECGGIMSLADVWCRVNRARGLELVSPEDLLNACKLLRTVDAPMSLRKFPSGACVLQLNSNRDEEIAKSTSDMIQENGYLTPEKLSQIANVSVLLARERLFTTERLGLACRDESIEGLAFYPNRFLLEA

Uniprot

H9IV79   A0A1E1WTB1   A0A2A4JVA3   A0A2H1VZU7   A0A212FA40   A0A194QA73   + More
A0A194R4G9   A0A1E1WPW4   A0A067QSM3   A0A2J7R8V4   A0A1Y1LRG2   A0A0C9QL40   A0A088AH78   A0A2A3ESG8   A0A154P6M4   A0A0M8ZZ49   Q16PQ7   A0A1S4FTK4   A0A0L7QWK9   A0A1B0D950   E2ADV5   A0A026WX58   A0A1L8DVW2   A0A336MXD8   A0A2P8XI05   A0A182LI75   Q5TPR5   A0A182V870   A0A182WZV1   A0A182RXG9   A0A182P5Z5   B4J2Z0   A0A1B0FC09   W8C1Y1   A0A2M4BQY4   A0A151X6F3   A0A1A9UG69   A0A182WCK8   A0A182INP3   A0A1A9ZRV6   A0A1I8MA52   F4WH83   A0A195E5Y9   A0A195F392   A0A1B6K9T8   A0A2M4BR08   A0A182HXI1   A0A2M4APG8   A0A195BA89   A0A224XDV5   B4MNC0   A0A0T6BF56   A0A182YI43   A0A182MM37   A0A1B6FJH0   A0A1I8Q7Z0   A0A0M4ELD7   B4KX67   A0A146LRX1   A0A146LIA9   A0A1B6CPV6   A0A182SAN5   A0A3B0JSN1   A0A1A9YIG0   A0A0A1WYF9   D2A354   A0A1B0AQW1   A0A0L0CIA9   B4LFJ1   Q29DL0   B4H6V4   A0A1A9WRN8   A0A182TTR1   A0A1L8DVJ0   A0A0K8W8A0   A0A023F944   A0A034WGE5   A0A0P4VYX0   T1ICG2   B3MAP5   A0A2M4CU28   K7J7B6   A0A2M4CSR6   A0A182Q018   A0A232FFD2   R4G8R8   A0A0V0G408   C3Y3K6   A0A1J1J5P8   A0A1A8QBD9   A0A1A8MCK6   A0A1A8RDJ5   A0A1A8KSM9   A0A1A8D566   A0A1A8CZI8   A0A1A8B1P0   A0A1A8U7B8   A0A3B3QGD0  

Pubmed

19121390    22118469    26354079    24845553    28004739    17510324    + More
20798317    24508170    30249741    29403074    20966253    12364791    14747013    17210077    17994087    24495485    25315136    21719571    25244985    26823975    25830018    18362917    19820115    26108605    15632085    25474469    25348373    27129103    20075255    28648823    18563158    29240929   

EMBL

BABH01000658    GDQN01000862    JAT90192.1    NWSH01000547    PCG75739.1    ODYU01005447    + More
SOQ46317.1    AGBW02009529    OWR50579.1    KQ459299    KPJ01895.1    KQ460761    KPJ12567.1    GDQN01002040    JAT89014.1    KK852983    KDR12870.1    NEVH01006721    PNF37259.1    GEZM01048964    JAV76239.1    GBYB01004249    JAG74016.1    KZ288189    PBC34647.1    KQ434827    KZC07585.1    KQ435794    KOX73877.1    CH477774    EAT36366.1    KQ414713    KOC62951.1    AJVK01012910    AJVK01012911    GL438820    EFN68467.1    KK107073    QOIP01000003    EZA60630.1    RLU24761.1    GFDF01003507    JAV10577.1    UFQT01002216    SSX32947.1    PYGN01002066    PSN31622.1    AAAB01008968    EAL39436.2    CH916366    EDV97160.1    CCAG010001732    GAMC01003367    JAC03189.1    GGFJ01006273    MBW55414.1    KQ982482    KYQ55858.1    GL888153    EGI66449.1    KQ979608    KYN20269.1    KQ981836    KYN35045.1    GEBQ01032013    JAT07964.1    GGFJ01006272    MBW55413.1    APCN01005306    GGFK01009342    MBW42663.1    KQ976542    KYM81147.1    GFTR01005799    JAW10627.1    CH963847    EDW72629.1    LJIG01000969    KRT85971.1    AXCM01001478    GECZ01019433    JAS50336.1    CP012525    ALC44247.1    CH933809    EDW19710.1    GDHC01008764    JAQ09865.1    GDHC01010841    JAQ07788.1    GEDC01021923    GEDC01012023    JAS15375.1    JAS25275.1    OUUW01000002    SPP76366.1    GBXI01010854    JAD03438.1    KQ971338    EFA02261.1    JXJN01002075    JXJN01002076    JRES01000355    KNC31980.1    CH940647    EDW70309.1    CH379070    EAL30404.1    CH479215    EDW33542.1    GFDF01003651    JAV10433.1    GDHF01005209    JAI47105.1    GBBI01001208    JAC17504.1    GAKP01004301    JAC54651.1    GDKW01000782    JAI55813.1    ACPB03003004    CH902618    EDV41332.1    GGFL01004652    MBW68830.1    GGFL01004141    MBW68319.1    AXCN02001904    NNAY01000294    OXU29405.1    GAHY01000497    JAA77013.1    GECL01003366    JAP02758.1    GG666484    EEN64882.1    CVRI01000073    CRL07731.1    HAEG01011965    SBR91115.1    HAEF01012915    SBR54074.1    HAEH01015763    HAEI01014398    SBS03448.1    HAED01006485    HAEE01014599    SBR34649.1    HAEA01000777    SBQ29257.1    HADZ01021306    SBP85247.1    HADY01021910    SBP60395.1    HAEJ01003548    SBS44005.1   

Proteomes

UP000005204    UP000218220    UP000007151    UP000053268    UP000053240    UP000027135    + More
UP000235965    UP000005203    UP000242457    UP000076502    UP000053105    UP000008820    UP000053825    UP000092462    UP000000311    UP000053097    UP000279307    UP000245037    UP000075882    UP000007062    UP000075903    UP000076407    UP000075900    UP000075885    UP000001070    UP000092444    UP000075809    UP000078200    UP000075920    UP000075880    UP000092445    UP000095301    UP000007755    UP000078492    UP000078541    UP000075840    UP000078540    UP000007798    UP000076408    UP000075883    UP000095300    UP000092553    UP000009192    UP000075901    UP000268350    UP000092443    UP000007266    UP000092460    UP000037069    UP000008792    UP000001819    UP000008744    UP000091820    UP000075902    UP000015103    UP000007801    UP000002358    UP000075886    UP000215335    UP000001554    UP000183832    UP000261540   

PRIDE

H9IV79   

Pfam

PF04157   EAP30        + More
PF11605   Vps36_ESCRT-II

Interpro

IPR036388   WH-like_DNA-bd_sf        + More
IPR040608   Snf8/Vps36       
IPR036390   WH_DNA-bd_sf       
IPR021648   GLUE_dom       
IPR011993   PH-like_dom_sf       
IPR037855   Vps36       

SUPFAM

SSF46785   SSF46785       

Gene 3D

1.10.10.10     2.30.29.30    

ProteinModelPortal

H9IV79   A0A1E1WTB1   A0A2A4JVA3   A0A2H1VZU7   A0A212FA40   A0A194QA73   + More
A0A194R4G9   A0A1E1WPW4   A0A067QSM3   A0A2J7R8V4   A0A1Y1LRG2   A0A0C9QL40   A0A088AH78   A0A2A3ESG8   A0A154P6M4   A0A0M8ZZ49   Q16PQ7   A0A1S4FTK4   A0A0L7QWK9   A0A1B0D950   E2ADV5   A0A026WX58   A0A1L8DVW2   A0A336MXD8   A0A2P8XI05   A0A182LI75   Q5TPR5   A0A182V870   A0A182WZV1   A0A182RXG9   A0A182P5Z5   B4J2Z0   A0A1B0FC09   W8C1Y1   A0A2M4BQY4   A0A151X6F3   A0A1A9UG69   A0A182WCK8   A0A182INP3   A0A1A9ZRV6   A0A1I8MA52   F4WH83   A0A195E5Y9   A0A195F392   A0A1B6K9T8   A0A2M4BR08   A0A182HXI1   A0A2M4APG8   A0A195BA89   A0A224XDV5   B4MNC0   A0A0T6BF56   A0A182YI43   A0A182MM37   A0A1B6FJH0   A0A1I8Q7Z0   A0A0M4ELD7   B4KX67   A0A146LRX1   A0A146LIA9   A0A1B6CPV6   A0A182SAN5   A0A3B0JSN1   A0A1A9YIG0   A0A0A1WYF9   D2A354   A0A1B0AQW1   A0A0L0CIA9   B4LFJ1   Q29DL0   B4H6V4   A0A1A9WRN8   A0A182TTR1   A0A1L8DVJ0   A0A0K8W8A0   A0A023F944   A0A034WGE5   A0A0P4VYX0   T1ICG2   B3MAP5   A0A2M4CU28   K7J7B6   A0A2M4CSR6   A0A182Q018   A0A232FFD2   R4G8R8   A0A0V0G408   C3Y3K6   A0A1J1J5P8   A0A1A8QBD9   A0A1A8MCK6   A0A1A8RDJ5   A0A1A8KSM9   A0A1A8D566   A0A1A8CZI8   A0A1A8B1P0   A0A1A8U7B8   A0A3B3QGD0  

PDB

2ZME     E-value=5.22986e-70,     Score=672

KEGG

101747178    K12190 ESCRT-II complex subunit VPS36 | (RefSeq) vacuolar protein-sorting-associated protein 36

PATHWAY

04144    Endocytosis - Bombyx mori (domestic silkworm)

GO

GO:0032509   GO:0032266   GO:0000814   GO:0043130   GO:0043328   GO:0031902   GO:0008104   GO:0045450   GO:0043025   GO:0008283   GO:0042981   GO:0043162   GO:0003730   GO:0008408   GO:0006807   GO:0016810   GO:0007169   GO:0016020   GO:0006412   GO:0016876   GO:0043039  

PANTHER

PTHR13128  

Length:

401

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.1083

Exp number, first 60 AAs:

0.0022

Total prob of N-in:

0.01455

outside

1  -  401

 

 

Pi

254.464953

Theta

193.517319

Tajima's D

0.938268

CLR

0.162184

CSRT

0.649267536623169

Interpretation

Uncertain