Gene

KWMTBOMO07932

Pre Gene Modal

BGIBMGA000979

Annotation

PREDICTED:_gamma-tubulin_complex_component_2-like_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr13(+):10425297-10435763      View in EpiBrowser

Full name

Gamma-tubulin complex component      

Location in the cell

Cytoplasmic   Reliability : 1.955 Nuclear   Reliability : 1.768

CDS

ATGCAGAGTACTATCAAAGAGCTCCTAGATGCATTAGGATGCAACTTGGAAGCCGACTCCGTTTTTGATTGCATTCAGAATGATCCCAACTATGGAAACTGTAACCTGTCCTCAAAACAGGTTAATGAATATGCACAACGTTTGGCACTGAAGGCATCGAATGCGAAGGCTTTTTTGAAAAAGTATGAAGAACTCAAAAACAGAAATACCGACAATCTGTCTGATGTAATAGTGCTATTTTACAAATTAGTTTGTGATGAAAGAAAGGCTAAAATACCAAAACCAAAAGTTGCACCAAAACCTATTTTGGGTGACAACAAACATCAAATCACAAAAGAAGATTTGCCGCAGATAAAGGACAAATTATTGAAAGCTGTGGATGAGAGTAAGAAACTTGTGATGAAGTCCTTTGAAGAGAAGGAGTCCAGACTCCAACCAACCTGGTACAGCAGCTTGGATTTACCCAACTGGCAAAAAGACCATCCTGCCATGTCATGGGACTTCCCAAAAGACCCTGTGCCTATAATTTCATCATTAGCTGGTATACCCATTGCGTCTCAAGAAAATATCCTTATAGATGAGCTGTTATACATTTTCTATGGTGTACCTGGAAATTACATAGTACACCAGCCAGTAAAAGATACGTATGATGCACGTACTTTCCTCATATCAGAAGATGTAGATGACGCATTAAAACAGATTGTACAACAAATGTTACCATTGGCCTCTAATTATTCCATAGTCAGGAGATTTATAGAACACTGCAATATGTGGTCTGGTCAAGTTTTACATGCACTTGTCGCTGCAATTGAAATTTTACTGAAGGATTACTATACTATGATCGCGCAACTGGAGACGGAACATATGACGGGAAGTTTGTCATTACAGAAATTATGGTATTTTGTGCTACCCACAATGCACACTATGCAAGTTCTTGCCGCTATAGTTACGAAAATTGGAAAAAGTGAGCTCCGTGGTGGAGCAGTTCTGACAGTACTGCATGACAAAACCAACACATTAATGGGCGACGCACGTGCACAGGAGATATCATTGTTCTTAACAGAACGCGCTTGCCGGCCCTACCTCAACGTCCTGGATCAGTGGATACATAAAGGAACCATTGTCGATCCATTTCAGGAGTTTATGATAGAAGATAACGAGCTAATTAATAAAGAAGAGCTGCCTGTAGATTATTCTGCTGATTATTGGGAGAAGAGATATTGTATACAAAGCGACAGAGTACCGAAATTTCTCGATAAGTTCACTGACATTATTCTTCGAACTGGAAAATATTTGAACGTTATCAGTCAGTGTGGAAAATCAATAAGCAAGACGAACACAGACGAAATAAAATACTCACTAAGAGAACAAAACTACGGTGCTATAATACAGAAGGCTTACGCTTTCGCAAGTAAATCATTGCTGGAGCTACTACTCAAAGAATACGATCTGATGGGTCGATTGAAGTCTGTCAAAAACTACTTCCTAATGAGCCAGGGCGATTTCATTGTGCAATTTATGGATGCGACCGATCAGGAGTTATCGAAGAAGATAGACGACATTATACCCTCCAAGTTGGAGTCACTTCTTGGACTTTGTCTTAGGCTCTCCGCTGCCAGTCATGATCCATATAATGAAGACATGAGAGTTGAACTCCTTCCGTACGATCTGCAGTTCCAAATGTTCAAAATCCTATCCATAGAAACAGAAGAGGAGGAAGAATACAAACACAACAAAGATTGTCCTCCGTTGACTGGCATAGAGACATTCTCGTTCGGCATGGAGGTGAAGTGGCCGGTGTCCTTAGTGCTCAACCACAAGGCCATCGCTTGCTATCAGATGATATTCAGACATCTCTTCTATTGTAAGCACGTCGAGAGACTACTTTGCAAGGTGTGGCTGTACAACAAGGTGGTGAAGCGGTTCTCGGAGGCCCGCCTGTACGCGGACGCGTTCGCTCTGCGCCAGCGGATGCTGAGCTGCATCCAGCACCTGCAGTACTACATGTGCGTCGAGGTCATCGAACCCTCCTGGTGCCAGCTCATACAAAGTCTAGATAAGGTAGGTGATCGTTTACATATCGACGCTTGA

Protein

MQSTIKELLDALGCNLEADSVFDCIQNDPNYGNCNLSSKQVNEYAQRLALKASNAKAFLKKYEELKNRNTDNLSDVIVLFYKLVCDERKAKIPKPKVAPKPILGDNKHQITKEDLPQIKDKLLKAVDESKKLVMKSFEEKESRLQPTWYSSLDLPNWQKDHPAMSWDFPKDPVPIISSLAGIPIASQENILIDELLYIFYGVPGNYIVHQPVKDTYDARTFLISEDVDDALKQIVQQMLPLASNYSIVRRFIEHCNMWSGQVLHALVAAIEILLKDYYTMIAQLETEHMTGSLSLQKLWYFVLPTMHTMQVLAAIVTKIGKSELRGGAVLTVLHDKTNTLMGDARAQEISLFLTERACRPYLNVLDQWIHKGTIVDPFQEFMIEDNELINKEELPVDYSADYWEKRYCIQSDRVPKFLDKFTDIILRTGKYLNVISQCGKSISKTNTDEIKYSLREQNYGAIIQKAYAFASKSLLELLLKEYDLMGRLKSVKNYFLMSQGDFIVQFMDATDQELSKKIDDIIPSKLESLLGLCLRLSAASHDPYNEDMRVELLPYDLQFQMFKILSIETEEEEEYKHNKDCPPLTGIETFSFGMEVKWPVSLVLNHKAIACYQMIFRHLFYCKHVERLLCKVWLYNKVVKRFSEARLYADAFALRQRMLSCIQHLQYYMCVEVIEPSWCQLIQSLDKVGDRLHIDA

Description

Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome.

Similarity

Belongs to the TUBGCP family.

Uniprot

H9IUP9   A0A3S2NUS6   A0A2A4J696   A0A2A4J631   A0A2W1BUG7   A0A2H1VKZ0   + More
A0A194QA90   A0A1E1WUU8   A0A0N1PHC7   A0A2A4J4X6   A0A067QYV0   A0A2J7PCE4   A0A2J7PCE5   A0A2J7PCF9   A0A2P8Y7R0   E2BX96   T1JH36   A0A151IHY4   A0A0J7KMW0   A0A026WSN5   A0A3L8DGF3   A0A151XBU4   F4WNM3   A0A195FV78   K7IYU5   A0A195B7L9   A0A158NUW2   A0A088A410   A0A195EC04   E2AFM1   A0A1W4XW69   A0A1W4XKP3   A0A0N0BIH5   D2A387   A0A154PR37   A0A1Y1NJV3   A0A310SLB9   A0A0T6B308   Q7SYD6   F1QT47   A0A3N0Y481   A0A3P9PDZ2   A0A087YKL2   A0A3B4C2T7   A0A3B4C2W1   A0A1W4ZRM3   A0A3B3Z0D0   A0A087UHZ4   A0A3B5R6N7   A0A315VF65   W5KNN7   A0A3B3R2T4   A0A1I8NA08   A0A3B4DRS1   M4AJU1   A0A3P9PE35   A0A3P8ZU99   W5UKF5   A0A1I8NA16   A0A3B3UIY3   A0A1I8NA10   A0A210PZW5   A0A3B3R4T3   W4XA84   A0A1I8PP14   W8BFW0   A0A1I8PNV2   A0A2I4BR70   W8C5P7   W8B8N2   A0A1I8PP07   F7E2B5   A0A0L0BRN3   A0A3B4TZG4   E6ZI47   A0A1A9WFR2   H2MBC7   A0A3B3BAL3   A0A1A8F6R3   A0A3P9MP51   A0A3P9JPY7   A0A3B4WB63   A0A3P8S0C2   A0A187GBR9   A0A3B4ZRR3   A0A1A8RBD7   A0A1A8LK90   A0A1A8UKN5   A0A1A8IDN3   A0A1A8CQP7   A0A1A8DH02   A0A3Q1FMU5   A0A3Q1CR36   A0A3P8QYU2   A0A3P9BNQ2   A0A146P7B6   A0A3P8WPQ8   I3KP32   A0A3B4ER17   A0A3Q2UXV5  

Pubmed

19121390    28756777    26354079    24845553    29403074    20798317    + More
24508170    30249741    21719571    20075255    21347285    18362917    19820115    28004739    23594743    23542700    29703783    25329095    29240929    25315136    25069045    23127152    28812685    24495485    20431018    26108605    17554307    29451363    25186727    24487278   

EMBL

BABH01000690    BABH01000691    RSAL01000173    RVE45081.1    NWSH01002968    PCG67198.1    + More
PCG67196.1    KZ149944    PZC76847.1    ODYU01003123    SOQ41485.1    KQ459299    KPJ01915.1    GDQN01000296    JAT90758.1    KQ460202    KPJ17181.1    PCG67197.1    KK852868    KDR14696.1    NEVH01027059    PNF14010.1    PNF14009.1    PNF14012.1    PYGN01000836    PSN40194.1    GL451230    EFN79679.1    JH432222    KQ977545    KYN02030.1    LBMM01005390    KMQ91561.1    KK107109    EZA59060.1    QOIP01000008    RLU19520.1    KQ982316    KYQ57817.1    GL888237    EGI64216.1    KQ981215    KYN44545.1    KQ976565    KYM80511.1    ADTU01002869    KQ979074    KYN22758.1    GL439118    EFN67772.1    KQ435728    KOX77754.1    KQ971338    EFA02278.2    KQ435066    KZC14333.1    GEZM01001085    GEZM01001084    JAV98171.1    KQ762962    OAD55185.1    LJIG01016094    KRT81633.1    BC054908    AAH54908.1    CR456631    CT573004    RJVU01053030    ROL41005.1    AYCK01001261    AYCK01001262    KK119890    KFM76983.1    NHOQ01001904    PWA21526.1    JT416886    AHH42180.1    NEDP02005322    OWF42044.1    AAGJ04125388    AAGJ04125389    GAMC01008938    JAB97617.1    GAMC01008936    JAB97619.1    GAMC01008935    JAB97620.1    AAMC01102562    AAMC01102563    AAMC01102564    AAMC01102565    AAMC01102566    AAMC01102567    AAMC01102568    AAMC01102569    AAMC01102570    AAMC01102571    JRES01001467    KNC22653.1    FQ310507    CBN81731.1    HAEB01007924    HAEC01011938    SBQ54451.1    KR733678    AKS04550.1    HAEH01002970    HAEI01007819    SBS03385.1    HAEF01007369    HAEG01012652    SBR44751.1    HADY01000730    HAEJ01007435    SBS47892.1    HAED01008797    HAEE01005782    SBQ95009.1    HADZ01017100    SBP81041.1    HAEA01004857    SBQ33337.1    GCES01146574    JAQ39748.1    AERX01020070   

Proteomes

UP000005204    UP000283053    UP000218220    UP000053268    UP000053240    UP000027135    + More
UP000235965    UP000245037    UP000008237    UP000078542    UP000036403    UP000053097    UP000279307    UP000075809    UP000007755    UP000078541    UP000002358    UP000078540    UP000005205    UP000005203    UP000078492    UP000000311    UP000192223    UP000053105    UP000007266    UP000076502    UP000000437    UP000242638    UP000028760    UP000261440    UP000192224    UP000261480    UP000054359    UP000002852    UP000018467    UP000261540    UP000095301    UP000265140    UP000221080    UP000261500    UP000242188    UP000007110    UP000095300    UP000192220    UP000008143    UP000037069    UP000261420    UP000091820    UP000001038    UP000261560    UP000265180    UP000265200    UP000261360    UP000265080    UP000261400    UP000257200    UP000257160    UP000265100    UP000265160    UP000265000    UP000265120    UP000005207    UP000261460    UP000264840   

PRIDE

H9IUP9   

Pfam

PF04130   GCP_C_terminal        + More
PF17681   GCP_N_terminal
PF03810   IBN_N

Interpro

IPR040457   GCP_C        + More
IPR042241   GCP_C_sf       
IPR007259   GCP       
IPR041470   GCP_N       
IPR011989   ARM-like       
IPR016024   ARM-type_fold       
IPR040021   XPO7       
IPR001494   Importin-beta_N       

SUPFAM

SSF48371   SSF48371       

Gene 3D

1.20.120.1900     1.25.10.10    

ProteinModelPortal

H9IUP9   A0A3S2NUS6   A0A2A4J696   A0A2A4J631   A0A2W1BUG7   A0A2H1VKZ0   + More
A0A194QA90   A0A1E1WUU8   A0A0N1PHC7   A0A2A4J4X6   A0A067QYV0   A0A2J7PCE4   A0A2J7PCE5   A0A2J7PCF9   A0A2P8Y7R0   E2BX96   T1JH36   A0A151IHY4   A0A0J7KMW0   A0A026WSN5   A0A3L8DGF3   A0A151XBU4   F4WNM3   A0A195FV78   K7IYU5   A0A195B7L9   A0A158NUW2   A0A088A410   A0A195EC04   E2AFM1   A0A1W4XW69   A0A1W4XKP3   A0A0N0BIH5   D2A387   A0A154PR37   A0A1Y1NJV3   A0A310SLB9   A0A0T6B308   Q7SYD6   F1QT47   A0A3N0Y481   A0A3P9PDZ2   A0A087YKL2   A0A3B4C2T7   A0A3B4C2W1   A0A1W4ZRM3   A0A3B3Z0D0   A0A087UHZ4   A0A3B5R6N7   A0A315VF65   W5KNN7   A0A3B3R2T4   A0A1I8NA08   A0A3B4DRS1   M4AJU1   A0A3P9PE35   A0A3P8ZU99   W5UKF5   A0A1I8NA16   A0A3B3UIY3   A0A1I8NA10   A0A210PZW5   A0A3B3R4T3   W4XA84   A0A1I8PP14   W8BFW0   A0A1I8PNV2   A0A2I4BR70   W8C5P7   W8B8N2   A0A1I8PP07   F7E2B5   A0A0L0BRN3   A0A3B4TZG4   E6ZI47   A0A1A9WFR2   H2MBC7   A0A3B3BAL3   A0A1A8F6R3   A0A3P9MP51   A0A3P9JPY7   A0A3B4WB63   A0A3P8S0C2   A0A187GBR9   A0A3B4ZRR3   A0A1A8RBD7   A0A1A8LK90   A0A1A8UKN5   A0A1A8IDN3   A0A1A8CQP7   A0A1A8DH02   A0A3Q1FMU5   A0A3Q1CR36   A0A3P8QYU2   A0A3P9BNQ2   A0A146P7B6   A0A3P8WPQ8   I3KP32   A0A3B4ER17   A0A3Q2UXV5  

PDB

5FM1     E-value=2.04968e-07,     Score=134

KEGG

101736809    K16569 gamma-tubulin complex component 2 | (RefSeq) gamma-tubulin complex component 2-like

GO

GO:0005874   GO:0007020   GO:0005815   GO:0005737   GO:0043015   GO:0000922   GO:0005634   GO:0051169   GO:0008536   GO:0006886   GO:0000278   GO:0000923   GO:0031122   GO:0000930   GO:0005813   GO:0051225   GO:0051415   GO:0008275   GO:0051321   GO:0000226   GO:0007169   GO:0016020   GO:0006412   GO:0016876   GO:0043039  

PANTHER

PTHR19302   PTHR12596:SF11  

Subcellular location

  
Nucleus  

Length:

696

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.29429

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00533

outside

1  -  696

 

 

Pi

166.894741

Theta

146.840028

Tajima's D

0.319029

CLR

0.185298

CSRT

0.462326883655817

Interpretation

Uncertain