Gene

KWMTBOMO07930  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA000977

Annotation

mitochondrial_single-stranded_DNA-binding_protein_[Bombyx_mori]

Location

Bomo_Chr13(+):10312537-10314095      View in EpiBrowser

Full name

Single-stranded DNA-binding protein, mitochondrial      

Alternative Name

Protein low power

Location in the cell

Mitochondrial   Reliability : 2.72

CDS

ATGTTAAGCTCGATCAGGACACCTACGTTGATTCGAGTATTTTTTGGCGGTCAGCGTCTACATACATCAGTAGCACGACTAGAAGGACAGAAAAACGAAAAAACCATCAATCAAGTGACACTTTTGGGAAGAGTTGGTGCAGATCCTCAAAAACGTGGTTCTGAAGAACATCCTGTAATAAATTTTCCTCTTGCAACACATTACAGCTACAAATATGAATCTGGTGATATACTGCAAAGAACAGATTGGCATAGAGTGAGTATATTCAAACCTGGGTTACGAGACACTGTCTATAAATATTTAAAGAAAGGTCAAAGAATTTATGTAACTGGAAAATTATCTTATGGAGAAGTAAAATTGGATGACGGGCAAGTGAGAACAGCCTCAACTGTTATTGCTGATGATGTTATATTTTTTCAAAGCACACCTTATGAATCTGAACAATAA

Protein

MLSSIRTPTLIRVFFGGQRLHTSVARLEGQKNEKTINQVTLLGRVGADPQKRGSEEHPVINFPLATHYSYKYESGDILQRTDWHRVSIFKPGLRDTVYKYLKKGQRIYVTGKLSYGEVKLDDGQVRTASTVIADDVIFFQSTPYESEQ

Description

This protein binds preferentially and cooperatively to pyrimidine rich ss-DNA. Required for mitochondrial DNA replication.

Subunit

Homotetramer.

Keywords

Complete proteome   Direct protein sequencing   DNA replication   DNA-binding   Mitochondrion   Reference proteome   Transit peptide  

Feature

chain  Single-stranded DNA-binding protein, mitochondrial

Uniprot

Q1HQ48   A0A212ETM8   A0A2W1BYJ3   A0A3S2LEP4   H9IUP7   A0A2A4JY16   + More
A0A2H1X3E5   A0A0N0PDK6   A0A194Q926   A0A0L7LNC1   K7J2W0   A0A2Z5U1X5   A0A232EG67   A0A067R5S5   A0A0C9PK12   A0A0C9QDF9   A0A2P8Y7G7   A0A2J7PCL7   U5ESN8   A0A1D2MZQ5   A0A1Y1L0X3   D2A2D3   J3JWK6   A0A336MJP1   E9IM03   A0A1W4WP28   A0A026W545   A0A182XWV6   W5JL12   A0A088A2R7   A0A2M4C3D9   A0A2M4C3B3   A0A1D2N849   A0A182V3U2   A0A182HSY2   E2A4E2   A0A182XI01   A0A182JRJ3   A0A2M3ZDV8   A0A182TH42   Q7QC69   A0A182PAF9   A0A182QTN3   A0A2A3E373   V9IM11   A0A2M4B066   A0A1B6DUF0   A0A2M4B0U9   A0A0K8TSF7   B0WQG1   A0A1I8MGI4   F4WAN6   A0A195AY36   A0A3L8E122   A0A158NX50   A0A154PC24   B4NKZ7   A0A195CHD0   A0A226E6V6   A0A182VXF0   Q294W1   B4GMJ5   A0A182G705   A0A023EH54   A0A3B0KIT3   B3MTU7   A0A182LZW8   A0A1W4VWC4   B4PR25   B4LXZ6   B4IBZ2   B3P0Z6   Q17Q33   B4QX63   A0A336MFW3   A0A0N7Z8J8   P54622   A0A034W0Y3   A0A0K8WDB0   C4WSH6   B4JG16   A0A0A1X171   A0A084WRC1   A0A224XQ22   N6UWT9   A0A0V0GC89   B4KA00   A0A1J1HGE6   A0A2S2Q2Z0   A0A0M5IZC3   E2C7L8   A0A1I8P9U9   A0A0T6ATB8   W8BSG6   A0A195DZ50   A0A2R7WS94   A0A1B6LWI7   A0A0L0C938   A0A1B0DM86   A0A1B6L6D0  

Pubmed

22118469    28756777    19121390    26354079    26227816    20075255    + More
26760975    28648823    24845553    29403074    27289101    28004739    18362917    19820115    22516182    23537049    21282665    24508170    25244985    20920257    23761445    20798317    12364791    26369729    25315136    21719571    30249741    21347285    17994087    15632085    26483478    24945155    17550304    17510324    27129103    10788480    10731132    12537572    8206370    7673145    11294889    25348373    25830018    24438588    24495485    26108605   

EMBL

DQ443204    ABF51293.1    AGBW02012542    OWR44862.1    KZ149944    PZC76843.1    + More
RSAL01000173    RVE45084.1    BABH01000698    NWSH01000456    PCG76282.1    ODYU01013177    SOQ59870.1    KQ460202    KPJ17184.1    KQ459299    KPJ01919.1    JTDY01000507    KOB76854.1    FX985754    BBA93641.1    NNAY01004854    OXU17337.1    KK852868    KDR14698.1    GBYB01001323    JAG71090.1    GBYB01001324    JAG71091.1    PYGN01000836    PSN40197.1    NEVH01027059    PNF14072.1    GANO01003179    JAB56692.1    LJIJ01000348    ODM98502.1    GEZM01067907    GEZM01067906    JAV67329.1    KQ971338    EFA02176.1    APGK01025098    BT127624    KB740573    KB632374    AEE62586.1    ENN80199.1    ERL93812.1    UFQS01001349    UFQT01001349    SSX10464.1    SSX30150.1    GL764129    EFZ18310.1    KK107474    EZA50149.1    ADMH02001133    ETN63988.1    GGFJ01010628    MBW59769.1    GGFJ01010651    MBW59792.1    LJIJ01000153    ODN01411.1    APCN01000376    GL436635    EFN71689.1    GGFM01005941    MBW26692.1    AAAB01008859    EAA07674.3    AXCN02000116    KZ288449    PBC25589.1    JR051701    AEY61541.1    GGFK01013106    MBW46427.1    GEDC01008000    JAS29298.1    GGFK01013117    MBW46438.1    GDAI01000304    JAI17299.1    DS232039    EDS32832.1    GL888050    EGI68794.1    KQ976703    KYM77116.1    QOIP01000002    RLU26085.1    ADTU01029188    KQ434869    KZC09371.1    CH964272    EDW84200.1    KQ977791    KYM99841.1    LNIX01000006    OXA53189.1    CM000070    EAL28852.2    CH479185    EDW38069.1    JXUM01149330    KQ570750    KXJ68309.1    GAPW01005407    JAC08191.1    OUUW01000008    SPP83648.1    CH902623    EDV30228.2    AXCM01006961    CM000160    EDW97347.1    CH940650    EDW66862.1    CH480827    EDW44900.1    CH954181    EDV49115.1    CH477187    EAT48883.1    CM000364    EDX12717.1    UFQT01001174    SSX29292.1    GDKW01003147    JAI53448.1    AF181084    AE014297    BT016028    U00669    GAKP01011504    JAC47448.1    GDHF01003232    JAI49082.1    ABLF02033337    AK340192    BAH70846.1    CH916369    EDV92555.1    GBXI01009475    JAD04817.1    ATLV01026020    KE525405    KFB52765.1    GFTR01001831    JAW14595.1    APGK01003755    KB735413    ENN83377.1    GECL01000740    JAP05384.1    CH933806    EDW15648.1    CVRI01000003    CRK87088.1    GGMS01002871    MBY72074.1    CP012526    ALC45361.1    GL453383    EFN76094.1    LJIG01022871    KRT78297.1    GAMC01002245    JAC04311.1    KQ980066    KYN17904.1    KK855410    PTY22432.1    GEBQ01011941    JAT28036.1    JRES01000835    KNC27899.1    AJVK01006906    GEBQ01020772    JAT19205.1   

Proteomes

UP000007151    UP000283053    UP000005204    UP000218220    UP000053240    UP000053268    + More
UP000037510    UP000002358    UP000215335    UP000027135    UP000245037    UP000235965    UP000094527    UP000007266    UP000019118    UP000030742    UP000192223    UP000053097    UP000076408    UP000000673    UP000005203    UP000075903    UP000075840    UP000000311    UP000076407    UP000075881    UP000075902    UP000007062    UP000075885    UP000075886    UP000242457    UP000002320    UP000095301    UP000007755    UP000078540    UP000279307    UP000005205    UP000076502    UP000007798    UP000078542    UP000198287    UP000075920    UP000001819    UP000008744    UP000069940    UP000249989    UP000268350    UP000007801    UP000075883    UP000192221    UP000002282    UP000008792    UP000001292    UP000008711    UP000008820    UP000000304    UP000000803    UP000007819    UP000001070    UP000030765    UP000009192    UP000183832    UP000092553    UP000008237    UP000095300    UP000078492    UP000037069    UP000092462   

PRIDE

Q1HQ48    H9IUP7    P54622   

Pfam

PF00436   SSB        + More
PF05773   RWD
PF04969   CS
PF04968   CHORD
PF06031   SERTA

Interpro

IPR011344   ssDNA-bd        + More
IPR012340   NA-bd_OB-fold       
IPR000424   Primosome_PriB/ssb       
IPR039790   CHORD_protein       
IPR006575   RWD-domain       
IPR007051   CHORD_dom       
IPR008978   HSP20-like_chaperone       
IPR016135   UBQ-conjugating_enzyme/RWD       
IPR007052   CS_dom       
IPR009263   SERTA_dom       

SUPFAM

SSF50249   SSF50249        + More
SSF54495   SSF54495       
SSF49764   SSF49764       

Gene 3D

2.60.40.790     3.10.110.10    

CDD

cd04496  SSB_OBF

ProteinModelPortal

Q1HQ48   A0A212ETM8   A0A2W1BYJ3   A0A3S2LEP4   H9IUP7   A0A2A4JY16   + More
A0A2H1X3E5   A0A0N0PDK6   A0A194Q926   A0A0L7LNC1   K7J2W0   A0A2Z5U1X5   A0A232EG67   A0A067R5S5   A0A0C9PK12   A0A0C9QDF9   A0A2P8Y7G7   A0A2J7PCL7   U5ESN8   A0A1D2MZQ5   A0A1Y1L0X3   D2A2D3   J3JWK6   A0A336MJP1   E9IM03   A0A1W4WP28   A0A026W545   A0A182XWV6   W5JL12   A0A088A2R7   A0A2M4C3D9   A0A2M4C3B3   A0A1D2N849   A0A182V3U2   A0A182HSY2   E2A4E2   A0A182XI01   A0A182JRJ3   A0A2M3ZDV8   A0A182TH42   Q7QC69   A0A182PAF9   A0A182QTN3   A0A2A3E373   V9IM11   A0A2M4B066   A0A1B6DUF0   A0A2M4B0U9   A0A0K8TSF7   B0WQG1   A0A1I8MGI4   F4WAN6   A0A195AY36   A0A3L8E122   A0A158NX50   A0A154PC24   B4NKZ7   A0A195CHD0   A0A226E6V6   A0A182VXF0   Q294W1   B4GMJ5   A0A182G705   A0A023EH54   A0A3B0KIT3   B3MTU7   A0A182LZW8   A0A1W4VWC4   B4PR25   B4LXZ6   B4IBZ2   B3P0Z6   Q17Q33   B4QX63   A0A336MFW3   A0A0N7Z8J8   P54622   A0A034W0Y3   A0A0K8WDB0   C4WSH6   B4JG16   A0A0A1X171   A0A084WRC1   A0A224XQ22   N6UWT9   A0A0V0GC89   B4KA00   A0A1J1HGE6   A0A2S2Q2Z0   A0A0M5IZC3   E2C7L8   A0A1I8P9U9   A0A0T6ATB8   W8BSG6   A0A195DZ50   A0A2R7WS94   A0A1B6LWI7   A0A0L0C938   A0A1B0DM86   A0A1B6L6D0  

PDB

3ULL     E-value=1.84737e-24,     Score=273

KEGG

732919    K03111 single-strand DNA-binding protein | (RefSeq) mitochondrial single-stranded DNA-binding protei

PATHWAY

03030    DNA replication - Bombyx mori (domestic silkworm)
03430    Mismatch repair - Bombyx mori (domestic silkworm)
03440    Homologous recombination - Bombyx mori (domestic silkworm)

GO

GO:0006260   GO:0003697   GO:0003677   GO:0042645   GO:0051096   GO:0006264   GO:0005739   GO:0000262   GO:0000002   GO:0016301   GO:0005515   GO:0004713   GO:0007169   GO:0016020   GO:0006412   GO:0016876   GO:0043039  

PANTHER

PTHR10302   PTHR12621  

Subcellular location

Mitochondrion  

Length:

148

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00058

Exp number, first 60 AAs:

0.00058

Total prob of N-in:

0.07936

outside

1  -  148

 

 

Pi

118.023146

Theta

135.359

Tajima's D

-0.455734

CLR

26.288661

CSRT

0.249237538123094

Interpretation

Uncertain