Gene

KWMTBOMO07916

Annotation

reverse_transcriptase_[Danaus_plexippus]

Location

Bomo_Chr13(+):10028860-10032244      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.622 PlasmaMembrane   Reliability : 1.103

CDS

ATGGACGAGGGGTGGAACGTGGTGGCCCGGCGGGGTAACAAGAAGGCCCCATTGACAGCTCCACAAGTGGGTGGAGTGTCGGCGGCCACGGCGGCTCAGGCTGCTCCCCAACAGGGTCGAGCGCCTGTAGCCGCCAAAAATAAAAATAAAAACAAAAAAACAAAGAAGCCACAGCGCGCGCCGCGATCGGCGGCAGTGGTCCTAACGCTGCTGCCGGCTGCCAAAGCAAAGGGCATGACATACGAGATGCAGACAGCCAATGGGGCCAAGCTGCTAGAATGTCCCGTTGCCGACAGTCCCGGCATCGCGGAGCGTCTGGCGGCAAGGCTCCGTATGGTTCTGCCTGAAGAGGAGGTGCGGGTGCTTAGGCCGGTCAAGATGGCTGAATTGAGAGTGACCGGCCTGGACGACTGCACCACCAGGGGTGAGGTGGCGGCGGCCGTCGCTGCCCAGGGCAACTGTGCCCCGCAGAATATAACCGTAGGCGAGCTGCGCTCTGGTTATACCGGGGCCGGCTCCGTGTGGGTACGTTGCCCGGTGGAGGCGGCCGTCGCCCTGGCTGCTCCTCCGCCTGGGAGACCGTCGGGGGATCCGGGCAGGTTGCGCGTGGGCTGGATAGCAGCCCACGTGCGCCTGTTAGAACCACGTGCCTGGCGGTGCCTAAGGTGCTTCAGCACTGGGCACTGCCTCGCCAGGTGCGTGAGTGCGGTTGACCGCAGTGGACTGTGTTTCCGCTGTGGTCAGCCTGGACACAAGGCGGCCGTGTGTGTGGCTGCGCCGCATTGTTCATTATGCGCGGCGGCCGGACGCAAGGCTGATCACCGGACCGGGGGCAAGGCATGCCCCCCGGCCGGCAAAAATGCAATTCGAAATTGGCGCCGCCAAGCTAAGCGGCGCCAAAAGAAGCGGTCGGCCGGGGGAGCACCGGCTGACACTTTGGCCCCCGCTGAGGCGTTCGAGCCCGATACCGGGGACAATAGAGTAGGGGAGGGGGCGATGGATGACATGCTGCTCCAGACTATGGCGGAGTGGTCAATTGACGTGGCTGTGGTCGCCGAGCCGTACTTCGTTCCCCCAGCGGACGACTGCTGGTTTGGGGACGTTGATGGCTTGGCGGCCATACATATAAGAAGATCCGCGATGATTCCTCCCCTGGCGATGGTGACCAGGGGCCCCGGGATCGTCGCGGTACAACTAGAAAATACCGTCGTGATCGGGGTGTACTTCTCTCCAAATCGGCCTACCGTCGAGTTCGAGCGGTTTCTGGACGGGCTAGAGGTGATCGCTCGTCACCTCTCTCCCCGTTCGGTGATACTGGCGGGGGACTTCAATGCGAAGTCTGTCGCTTGGGGTTCCCCATCCACGGACGCTCGTGGTAGGCTGTTGGAGGAGTGGGCGGTCGCGGCCGATCTCTGTATCGTTAACAGGGGCTCGGTCGTGACATGCGTGCCTTGGATGGGAGAGTCAATCATGGACTTGACGTTCGCGAGCTCGTCCATCGCACAGCGCATCCTGGGCTGGGGCGTGGTGGTGGGGGCGGAATCGTTGTCGGATCACCGGTATATCCGGTTCGATCTTTCCGCTCCCGCGCCGACGCCGGCCGCAGGCGCTCGCGGGGTTAACCCCCCGCGGAGTGCGTCCCGATCATTCCCTAGGTGGGCATTGAAGCTCCTGAAGAAGGCGCTCCTGGTGGAGGCCTCTATAGTGGCGGCGTGGACGCCCATGCGTCCACACCCTTTCGACGTGGAGGCTGAGGCCGAATGGTTCCGCGGCGCGATGCACCGCATATGCGATGCCTCGATGCCCCGGGTCGGCCCTCGGCGTTGTGGACGGCGGCAGTCGCCCTGGTGGTCGCCCGAAATTGCGAGACTGCGTGCAGTCTCCATTCGGGCGAGCCGCCGGTGCGCTAGACACCGCCGTCGCCGCCACTTGCGGCGCGACGGCCCCGTCGCGTTCGCGGAGGAGGAGACCCGGCTGCACGGCGAATATCGTGCTGCGAAGGTCGCCCTGCGGCTGGCCATCAGGCGGGCCAAGGAGCAGAACATGGAGAGACTCTTGGAGGCGCTCGAAGCGGATCCATGGGGGAGCCCGTATAGGCTGGTGCGCGGCAAACTGCGCCCGTGGCCCCCCCCTTTGACTGAGCGACTTCAGCCTCAACAGCTGCGGGACATCGTTTCGGCGTTGTTCCCGCAGGAGCGGGAGGGTTTTGTTCCCCCTGCTATGGGTGAGCCGTCGGACGCCATCGACGGCGAAGCCCCTGCTGAGGTGCCCCGTATCACTGGGGCAGAGCTCCGTGTGGCCGTTGTCAGGATGACTGCAAAGGACACGGCCCCCGACCCGGACGGAGTCCATGGCCGGGTGCTGGCCTTGGCCCTCGATGCCCTGGGGGACCGGCTCCTGGAGCTATTTAATGGTTGCCTGGAGTCGGGACGGTTTCCGTTGCTCTGGCGGACGGGCAGACTTGTGTTGTTGAGAAAGGAGGGGCACCCGGTGGATACAGCCGCCGGGTATCGTCTTATCGTACTGCTGGACGAGGCGGGAAAATTGCTGGAGCGTATTCTGGCTGCCCGCATCGTTCAGCACCTGGTCGGGGTTGGACCTGACCTGTCGGCGGAGCAGTTCGGCTTCCGGGAGGGCCGTTCGACCGTGGATGCGATACTTCGCGTGCGGGCCCTCTCGGACGAGGCTGTCTCACGGGGTGGGGTGGCGCTGGCGGTGTCTCTTGACATCGCCAACGCATTTAACACCCTGCCCTGGTCTGTGATAGGGGGGGCACTAGAGAGGCATGGAGTGCCCCTCTACCTCCGCCGGCTAGTTGGCTCCTATTTGGAGGCCAGGTCGGTCGAATGTACCGGGTACGGTGGGACCCTTCACCGTTTTCCGGTCGTGCGTGGTGTTCCACAGGGGTCGGTTCTCGGACCCCTCTTGTGGAACATCGGGTACGACTGGGTGCTGAGGGGTGCCCTCCTCCCGGGCCTCCGTGTTATTTGTTACGCGGACGACACTTTGGTCGTGGCCCGGGGGATGATTATAGAGAGTCTGCCCGTCTCGCCACAGCGGGAGTGGCCCTCGTCGTCGGGAGGATAA

Protein

MDEGWNVVARRGNKKAPLTAPQVGGVSAATAAQAAPQQGRAPVAAKNKNKNKKTKKPQRAPRSAAVVLTLLPAAKAKGMTYEMQTANGAKLLECPVADSPGIAERLAARLRMVLPEEEVRVLRPVKMAELRVTGLDDCTTRGEVAAAVAAQGNCAPQNITVGELRSGYTGAGSVWVRCPVEAAVALAAPPPGRPSGDPGRLRVGWIAAHVRLLEPRAWRCLRCFSTGHCLARCVSAVDRSGLCFRCGQPGHKAAVCVAAPHCSLCAAAGRKADHRTGGKACPPAGKNAIRNWRRQAKRRQKKRSAGGAPADTLAPAEAFEPDTGDNRVGEGAMDDMLLQTMAEWSIDVAVVAEPYFVPPADDCWFGDVDGLAAIHIRRSAMIPPLAMVTRGPGIVAVQLENTVVIGVYFSPNRPTVEFERFLDGLEVIARHLSPRSVILAGDFNAKSVAWGSPSTDARGRLLEEWAVAADLCIVNRGSVVTCVPWMGESIMDLTFASSSIAQRILGWGVVVGAESLSDHRYIRFDLSAPAPTPAAGARGVNPPRSASRSFPRWALKLLKKALLVEASIVAAWTPMRPHPFDVEAEAEWFRGAMHRICDASMPRVGPRRCGRRQSPWWSPEIARLRAVSIRASRRCARHRRRRHLRRDGPVAFAEEETRLHGEYRAAKVALRLAIRRAKEQNMERLLEALEADPWGSPYRLVRGKLRPWPPPLTERLQPQQLRDIVSALFPQEREGFVPPAMGEPSDAIDGEAPAEVPRITGAELRVAVVRMTAKDTAPDPDGVHGRVLALALDALGDRLLELFNGCLESGRFPLLWRTGRLVLLRKEGHPVDTAAGYRLIVLLDEAGKLLERILAARIVQHLVGVGPDLSAEQFGFREGRSTVDAILRVRALSDEAVSRGGVALAVSLDIANAFNTLPWSVIGGALERHGVPLYLRRLVGSYLEARSVECTGYGGTLHRFPVVRGVPQGSVLGPLLWNIGYDWVLRGALLPGLRVICYADDTLVVARGMIIESLPVSPQREWPSSSGG

Uniprot

A0A212EYI2   A0A0J7KQK3   A0A0J7N0R3   A0A0J7NC28   A0A0J7NFZ0   A0A0J7KFH2   + More
A0A3S2LNH8   A0A0J7KF91   A0A0J7N8R4   A0A0J7KRB8   A0A0J7KDK4   X1WZ64   J9KM84   J9JWJ3   X1WJY4   A0A2S2PRL8   J9LQQ1   J9KJG8   J9LA43   X1X2B5   J9L0J0   A0A139WN93   A0A139WNC9   J9KNS1   A0A139W9B3   J9M784   J9KWM9  

Pubmed

22118469    18362917    19820115   

EMBL

AGBW02011529    OWR46521.1    LBMM01004272    KMQ92618.1    LBMM01012412    KMQ86235.1    + More
LBMM01006996    KMQ90130.1    LBMM01005474    KMQ91485.1    LBMM01008278    KMQ89009.1    RSAL01003504    RVE40273.1    LBMM01008445    KMQ88871.1    LBMM01008226    KMQ89040.1    LBMM01003988    KMQ92922.1    LBMM01008902    KMQ88543.1    ABLF02011183    ABLF02041884    ABLF02018942    ABLF02041885    ABLF02013358    ABLF02013361    ABLF02054869    ABLF02011238    GGMR01019493    MBY32112.1    ABLF02030663    ABLF02041312    ABLF02041886    ABLF02018098    ABLF02019402    ABLF02059310    ABLF02027248    KQ971310    KYB29499.1    KYB29500.1    ABLF02018808    KQ972544    KXZ75869.1    ABLF02018758    ABLF02018759    ABLF02011927   

Proteomes

UP000007151    UP000036403    UP000283053    UP000007819    UP000007266   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF00098   zf-CCHC
PF01421   Reprolysin
PF00075   RNase_H

Interpro

IPR001878   Znf_CCHC        + More
IPR000477   RT_dom       
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR036875   Znf_CCHC_sf       
IPR024079   MetalloPept_cat_dom_sf       
IPR001590   Peptidase_M12B       
IPR012337   RNaseH-like_sf       
IPR002156   RNaseH_domain       
IPR036397   RNaseH_sf       
IPR000663   Natr_peptide       

SUPFAM

SSF56219   SSF56219        + More
SSF57756   SSF57756       
SSF53098   SSF53098       

Gene 3D

3.60.10.10     3.40.390.10     3.30.420.10    

ProteinModelPortal

A0A212EYI2   A0A0J7KQK3   A0A0J7N0R3   A0A0J7NC28   A0A0J7NFZ0   A0A0J7KFH2   + More
A0A3S2LNH8   A0A0J7KF91   A0A0J7N8R4   A0A0J7KRB8   A0A0J7KDK4   X1WZ64   J9KM84   J9JWJ3   X1WJY4   A0A2S2PRL8   J9LQQ1   J9KJG8   J9LA43   X1X2B5   J9L0J0   A0A139WN93   A0A139WNC9   J9KNS1   A0A139W9B3   J9M784   J9KWM9  

PDB

1WDU     E-value=3.08588e-09,     Score=152

KEGG

101737183    no KO assigned | (RefSeq) uncharacterized LOC101737183

GO

GO:0008270   GO:0003676   GO:0003964   GO:0004523   GO:0016021   GO:0005179   GO:0005576   GO:0046872   GO:0006468   GO:0004713   GO:0007169   GO:0016020   GO:0006412   GO:0016876   GO:0043039  

Length:

1028

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.10198

Exp number, first 60 AAs:

0.00781

Total prob of N-in:

0.00370

outside

1  -  1028

 

 

Pi

0

Theta

0

Tajima's D

0

CLR

0.024691

CSRT

0

Interpretation

Uncertain