SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO07916
Annotation
reverse_transcriptase_[Danaus_plexippus]
Location in the cell
Mitochondrial   Reliability : 1.622 PlasmaMembrane   Reliability : 1.103
 

Sequence

CDS
ATGGACGAGGGGTGGAACGTGGTGGCCCGGCGGGGTAACAAGAAGGCCCCATTGACAGCTCCACAAGTGGGTGGAGTGTCGGCGGCCACGGCGGCTCAGGCTGCTCCCCAACAGGGTCGAGCGCCTGTAGCCGCCAAAAATAAAAATAAAAACAAAAAAACAAAGAAGCCACAGCGCGCGCCGCGATCGGCGGCAGTGGTCCTAACGCTGCTGCCGGCTGCCAAAGCAAAGGGCATGACATACGAGATGCAGACAGCCAATGGGGCCAAGCTGCTAGAATGTCCCGTTGCCGACAGTCCCGGCATCGCGGAGCGTCTGGCGGCAAGGCTCCGTATGGTTCTGCCTGAAGAGGAGGTGCGGGTGCTTAGGCCGGTCAAGATGGCTGAATTGAGAGTGACCGGCCTGGACGACTGCACCACCAGGGGTGAGGTGGCGGCGGCCGTCGCTGCCCAGGGCAACTGTGCCCCGCAGAATATAACCGTAGGCGAGCTGCGCTCTGGTTATACCGGGGCCGGCTCCGTGTGGGTACGTTGCCCGGTGGAGGCGGCCGTCGCCCTGGCTGCTCCTCCGCCTGGGAGACCGTCGGGGGATCCGGGCAGGTTGCGCGTGGGCTGGATAGCAGCCCACGTGCGCCTGTTAGAACCACGTGCCTGGCGGTGCCTAAGGTGCTTCAGCACTGGGCACTGCCTCGCCAGGTGCGTGAGTGCGGTTGACCGCAGTGGACTGTGTTTCCGCTGTGGTCAGCCTGGACACAAGGCGGCCGTGTGTGTGGCTGCGCCGCATTGTTCATTATGCGCGGCGGCCGGACGCAAGGCTGATCACCGGACCGGGGGCAAGGCATGCCCCCCGGCCGGCAAAAATGCAATTCGAAATTGGCGCCGCCAAGCTAAGCGGCGCCAAAAGAAGCGGTCGGCCGGGGGAGCACCGGCTGACACTTTGGCCCCCGCTGAGGCGTTCGAGCCCGATACCGGGGACAATAGAGTAGGGGAGGGGGCGATGGATGACATGCTGCTCCAGACTATGGCGGAGTGGTCAATTGACGTGGCTGTGGTCGCCGAGCCGTACTTCGTTCCCCCAGCGGACGACTGCTGGTTTGGGGACGTTGATGGCTTGGCGGCCATACATATAAGAAGATCCGCGATGATTCCTCCCCTGGCGATGGTGACCAGGGGCCCCGGGATCGTCGCGGTACAACTAGAAAATACCGTCGTGATCGGGGTGTACTTCTCTCCAAATCGGCCTACCGTCGAGTTCGAGCGGTTTCTGGACGGGCTAGAGGTGATCGCTCGTCACCTCTCTCCCCGTTCGGTGATACTGGCGGGGGACTTCAATGCGAAGTCTGTCGCTTGGGGTTCCCCATCCACGGACGCTCGTGGTAGGCTGTTGGAGGAGTGGGCGGTCGCGGCCGATCTCTGTATCGTTAACAGGGGCTCGGTCGTGACATGCGTGCCTTGGATGGGAGAGTCAATCATGGACTTGACGTTCGCGAGCTCGTCCATCGCACAGCGCATCCTGGGCTGGGGCGTGGTGGTGGGGGCGGAATCGTTGTCGGATCACCGGTATATCCGGTTCGATCTTTCCGCTCCCGCGCCGACGCCGGCCGCAGGCGCTCGCGGGGTTAACCCCCCGCGGAGTGCGTCCCGATCATTCCCTAGGTGGGCATTGAAGCTCCTGAAGAAGGCGCTCCTGGTGGAGGCCTCTATAGTGGCGGCGTGGACGCCCATGCGTCCACACCCTTTCGACGTGGAGGCTGAGGCCGAATGGTTCCGCGGCGCGATGCACCGCATATGCGATGCCTCGATGCCCCGGGTCGGCCCTCGGCGTTGTGGACGGCGGCAGTCGCCCTGGTGGTCGCCCGAAATTGCGAGACTGCGTGCAGTCTCCATTCGGGCGAGCCGCCGGTGCGCTAGACACCGCCGTCGCCGCCACTTGCGGCGCGACGGCCCCGTCGCGTTCGCGGAGGAGGAGACCCGGCTGCACGGCGAATATCGTGCTGCGAAGGTCGCCCTGCGGCTGGCCATCAGGCGGGCCAAGGAGCAGAACATGGAGAGACTCTTGGAGGCGCTCGAAGCGGATCCATGGGGGAGCCCGTATAGGCTGGTGCGCGGCAAACTGCGCCCGTGGCCCCCCCCTTTGACTGAGCGACTTCAGCCTCAACAGCTGCGGGACATCGTTTCGGCGTTGTTCCCGCAGGAGCGGGAGGGTTTTGTTCCCCCTGCTATGGGTGAGCCGTCGGACGCCATCGACGGCGAAGCCCCTGCTGAGGTGCCCCGTATCACTGGGGCAGAGCTCCGTGTGGCCGTTGTCAGGATGACTGCAAAGGACACGGCCCCCGACCCGGACGGAGTCCATGGCCGGGTGCTGGCCTTGGCCCTCGATGCCCTGGGGGACCGGCTCCTGGAGCTATTTAATGGTTGCCTGGAGTCGGGACGGTTTCCGTTGCTCTGGCGGACGGGCAGACTTGTGTTGTTGAGAAAGGAGGGGCACCCGGTGGATACAGCCGCCGGGTATCGTCTTATCGTACTGCTGGACGAGGCGGGAAAATTGCTGGAGCGTATTCTGGCTGCCCGCATCGTTCAGCACCTGGTCGGGGTTGGACCTGACCTGTCGGCGGAGCAGTTCGGCTTCCGGGAGGGCCGTTCGACCGTGGATGCGATACTTCGCGTGCGGGCCCTCTCGGACGAGGCTGTCTCACGGGGTGGGGTGGCGCTGGCGGTGTCTCTTGACATCGCCAACGCATTTAACACCCTGCCCTGGTCTGTGATAGGGGGGGCACTAGAGAGGCATGGAGTGCCCCTCTACCTCCGCCGGCTAGTTGGCTCCTATTTGGAGGCCAGGTCGGTCGAATGTACCGGGTACGGTGGGACCCTTCACCGTTTTCCGGTCGTGCGTGGTGTTCCACAGGGGTCGGTTCTCGGACCCCTCTTGTGGAACATCGGGTACGACTGGGTGCTGAGGGGTGCCCTCCTCCCGGGCCTCCGTGTTATTTGTTACGCGGACGACACTTTGGTCGTGGCCCGGGGGATGATTATAGAGAGTCTGCCCGTCTCGCCACAGCGGGAGTGGCCCTCGTCGTCGGGAGGATAA
Protein
MDEGWNVVARRGNKKAPLTAPQVGGVSAATAAQAAPQQGRAPVAAKNKNKNKKTKKPQRAPRSAAVVLTLLPAAKAKGMTYEMQTANGAKLLECPVADSPGIAERLAARLRMVLPEEEVRVLRPVKMAELRVTGLDDCTTRGEVAAAVAAQGNCAPQNITVGELRSGYTGAGSVWVRCPVEAAVALAAPPPGRPSGDPGRLRVGWIAAHVRLLEPRAWRCLRCFSTGHCLARCVSAVDRSGLCFRCGQPGHKAAVCVAAPHCSLCAAAGRKADHRTGGKACPPAGKNAIRNWRRQAKRRQKKRSAGGAPADTLAPAEAFEPDTGDNRVGEGAMDDMLLQTMAEWSIDVAVVAEPYFVPPADDCWFGDVDGLAAIHIRRSAMIPPLAMVTRGPGIVAVQLENTVVIGVYFSPNRPTVEFERFLDGLEVIARHLSPRSVILAGDFNAKSVAWGSPSTDARGRLLEEWAVAADLCIVNRGSVVTCVPWMGESIMDLTFASSSIAQRILGWGVVVGAESLSDHRYIRFDLSAPAPTPAAGARGVNPPRSASRSFPRWALKLLKKALLVEASIVAAWTPMRPHPFDVEAEAEWFRGAMHRICDASMPRVGPRRCGRRQSPWWSPEIARLRAVSIRASRRCARHRRRRHLRRDGPVAFAEEETRLHGEYRAAKVALRLAIRRAKEQNMERLLEALEADPWGSPYRLVRGKLRPWPPPLTERLQPQQLRDIVSALFPQEREGFVPPAMGEPSDAIDGEAPAEVPRITGAELRVAVVRMTAKDTAPDPDGVHGRVLALALDALGDRLLELFNGCLESGRFPLLWRTGRLVLLRKEGHPVDTAAGYRLIVLLDEAGKLLERILAARIVQHLVGVGPDLSAEQFGFREGRSTVDAILRVRALSDEAVSRGGVALAVSLDIANAFNTLPWSVIGGALERHGVPLYLRRLVGSYLEARSVECTGYGGTLHRFPVVRGVPQGSVLGPLLWNIGYDWVLRGALLPGLRVICYADDTLVVARGMIIESLPVSPQREWPSSSGG

Summary

Pfam
PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF00098   zf-CCHC
PF01421   Reprolysin
PF00075   RNase_H
Interpro
IPR001878   Znf_CCHC        + More
IPR000477   RT_dom       
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR036875   Znf_CCHC_sf       
IPR024079   MetalloPept_cat_dom_sf       
IPR001590   Peptidase_M12B       
IPR012337   RNaseH-like_sf       
IPR002156   RNaseH_domain       
IPR036397   RNaseH_sf       
IPR000663   Natr_peptide       
SUPFAM
SSF56219   SSF56219        + More
SSF57756   SSF57756       
SSF53098   SSF53098       
Gene 3D
PDB
1WDU     E-value=3.08588e-09,     Score=152

Ontologies

Topology

Length:
1028
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.10198
Exp number, first 60 AAs:
0.00781
Total prob of N-in:
0.00370
outside
1  -  1028
 
 

Population Genetic Test Statistics

Pi
0
Theta
0
Tajima's D
0
CLR
0.024691
CSRT
0
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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