Gene

KWMTBOMO07915

Annotation

PREDICTED:_alkaline_nuclease_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr13(-):10025871-10027799      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 1.178

CDS

ATGGAAAAAGTAAAACAGACTTCGGAAGCAACAAAAACATCAAAACTCCGTGCACGCATTGGTGAAGCAGGATATAATACTACTGTTTACACGGGAACCTTCGGCGTAACCCAACTACGGGACCAAAATGGCCAACTTGTTGATATTTACCTTTACCGGGACACTAACAATAACCCTCAGATACCTGTTCCGTTGTACTTTTACAAAGTTGTGTATGAGCCTGTCCTACAAAAGGGCACAGCTTTTGTGGCGATAAACAACCCGTACTACACTGAAACTGAAGTACGCGCCTTGCAATTCTGCACTGACCACTGCCGCAACAACACCGCGTTCAACTGGATTGGCTGGCAACCAGATCGAATCGACATCGGGTACAGCTTCTGCTGTACCATCGAAGACTTTAGACGGGCTGTGCCGCATTTGCCAGACTTTAATGTTACCGGGCTTTTGTACTGA

Protein

MEKVKQTSEATKTSKLRARIGEAGYNTTVYTGTFGVTQLRDQNGQLVDIYLYRDTNNNPQIPVPLYFYKVVYEPVLQKGTAFVAINNPYYTETEVRALQFCTDHCRNNTAFNWIGWQPDRIDIGYSFCCTIEDFRRAVPHLPDFNVTGLLY

Uniprot

A0A2H1V3T5   A0A1E1WMF9   A0A219LVV4   H9IV93   A0A2A4JNR7   A0A2W1BP50   + More
Q08JX1   A0A2H1WP54   A0A2A4JML0   B7VCC3   A0A219LVV6   A0A2A4JP76   A0A194Q8Y6   A0A2W1BYI3   A0A1E1WTA0   A0A194RKW6   B7VCC2   F6K708   A0A2H1W493   A0A219LVU7   A0A219LVV5   A0A0N1IB53   A0A194Q8R2   A0A194Q8S9   A0A0N1IIN7   A0A212ETI7   A0A0N1ICG2   A0A212FE21   A0A2W1BV74   A0A0L7LLE8   A0A2A4JKE1   A0A219LWI3   H9JIU6   A0A0L7KR40   A0A2H1WT12   A0A0N1PH39   A0A3S2NR20   A0A219LVU2   A0A194Q7A2   A0A2A4K9C7   A0A0N0PDC8   A0A212FJT7   A0A2H1VP74   A0A2H1W9B5   B4N4S4   B4PH14   A0A0J9RZ63   B4QQB0   Q9VVV1   B3NDV9   B3M7Q7   A0A1B0CE89   A0A212EIS2   B4IFY0   T1P9F7   W8BUZ2   W8BEM3   A0A1W4UQR3   A0A1W4XR54   A0A1I8MCL2   A0A2P8ZMT4   A0A067RF87   A0A0P5K0P6   A0A0N8B5M4   A0A0P5W6R4   A0A0P5TF11   A0A0P6C109   A0A3B0JT56   A0A0M4EDJ3   B4IYD0   A0A1L8DXM9   A0A1L8DXI7   A0A1L8DPN4   A0A164USM9   Q29DJ9   B4H6U2   A0A1B0D5G0   A0A1A9YID0   A0A1B0C252   B4N4S6   A0A1A9UG98   D3TPG4   A0A0P5FLY5   A0A1B0FEL1   B4KZ79   Q29DK1   B4H6U4   A0A0P5L6U2   A0A0P5JV63   A0A0P5RYT1   A0A0P5S977   A0A0P5NE77   A0A0P5S216   A0A0N8CAS7   A0A0P5NWM0   A0A0P5NP42   A0A0P5S6M9  

Pubmed

19121390    28756777    17244546    26354079    22118469    26227816    + More
17994087    17550304    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    24495485    25315136    29403074    24845553    15632085    20353571   

EMBL

ODYU01000364    SOQ35022.1    GDQN01002889    JAT88165.1    KM229551    AKB95590.1    + More
BABH01000729    NWSH01000988    PCG73224.1    KZ149944    PZC76832.1    AB254196    BAF33251.1    ODYU01009979    SOQ54756.1    PCG73221.1    FM253096    CAR92522.1    KM229550    AKB95589.1    PCG73222.1    KQ459324    KPJ01440.1    PZC76833.1    GDQN01000872    JAT90182.1    KQ460045    KPJ18059.1    FM253095    CAR92521.1    HM357845    AEA76311.1    ODYU01006163    SOQ47776.1    KM229544    AKB95583.1    KM229545    AKB95584.1    KQ460202    KPJ17193.1    KQ459299    KPJ01927.1    KPJ01928.1    KPJ17191.1    AGBW02012569    OWR44806.1    KQ458751    KPJ05311.1    AGBW02008987    OWR51970.1    KZ149927    PZC77534.1    JTDY01000675    KOB76267.1    NWSH01001168    PCG72289.1    KM229547    AKB95586.1    BABH01023166    JTDY01007018    KOB65521.1    ODYU01010450    SOQ55574.1    KQ460396    KPJ15353.1    RSAL01000132    RVE46356.1    KM229548    AKB95587.1    KQ459580    KPI99275.1    NWSH01000015    PCG80821.1    KPJ15345.1    AGBW02008242    OWR53970.1    ODYU01003633    SOQ42630.1    ODYU01007039    SOQ49432.1    CH964095    EDW79148.1    CM000159    EDW95384.1    CM002912    KMZ00475.1    CM000363    EDX11016.1    AE014296    AY113510    AAF49206.1    AAM29515.1    CH954178    EDV52313.1    CH902618    EDV40985.1    AJWK01008671    AGBW02014574    OWR41393.1    CH480834    EDW46567.1    KA645411    AFP60040.1    GAMC01009439    JAB97116.1    GAMC01009438    JAB97117.1    PYGN01000014    PSN57821.1    KK852672    KDR18788.1    GDIQ01191520    JAK60205.1    GDIQ01210467    GDIP01099360    JAK41258.1    JAM04355.1    GDIP01090536    JAM13179.1    GDIP01127749    JAL75965.1    GDIP01022692    JAM81023.1    OUUW01000002    SPP76536.1    CP012525    ALC43684.1    CH916366    EDV97603.1    GFDF01002908    JAV11176.1    GFDF01002907    JAV11177.1    GFDF01005662    JAV08422.1    LRGB01001574    KZS11632.1    CH379070    EAL30415.1    CH479215    EDW33530.1    AJVK01011750    AJVK01011751    AJVK01011752    JXJN01024350    EDW79150.1    EZ423316    ADD19592.1    GDIQ01255922    JAJ95802.1    CCAG010013884    CH933809    EDW18905.1    EAL30413.1    EDW33532.1    GDIQ01199212    JAK52513.1    GDIQ01199210    JAK52515.1    GDIQ01099449    JAL52277.1    GDIQ01099446    JAL52280.1    GDIQ01143782    JAL07944.1    GDIQ01098041    JAL53685.1    GDIQ01098043    JAL53683.1    GDIQ01143783    JAL07943.1    GDIQ01143785    JAL07941.1    GDIQ01098044    JAL53682.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000053240    UP000007151    UP000037510    + More
UP000283053    UP000007798    UP000002282    UP000000304    UP000000803    UP000008711    UP000007801    UP000092461    UP000001292    UP000192221    UP000192223    UP000095301    UP000245037    UP000027135    UP000268350    UP000092553    UP000001070    UP000076858    UP000001819    UP000008744    UP000092462    UP000092443    UP000092460    UP000078200    UP000092444    UP000009192   

PRIDE

H9IV93    Q08JX1    B7VCC3    B7VCC2    H9JIU6    Q9VVV1    + More

Pfam

PF01223   Endonuclease_NS        + More
PF09243   Rsm22
PF16923   Glyco_hydro_63N
PF03200   Glyco_hydro_63

Interpro

IPR040255   Non-specific_endonuclease        + More
IPR001604   DNA/RNA_non-sp_Endonuclease       
IPR020821   Extracellular_endonuc_su_A       
IPR015324   Ribosomal_Rsm22-like       
IPR029063   SAM-dependent_MTases       
IPR038518   Glyco_hydro_63N_sf       
IPR031631   Glyco_hydro_63N       
IPR008928   6-hairpin_glycosidase_sf       
IPR012341   6hp_glycosidase-like_sf       
IPR031335   Glyco_hydro_63_C       
IPR004888   Glycoside_hydrolase_63       

SUPFAM

SSF53335   SSF53335        + More
SSF48208   SSF48208       

Gene 3D

1.50.10.10     2.70.98.110    

ProteinModelPortal

A0A2H1V3T5   A0A1E1WMF9   A0A219LVV4   H9IV93   A0A2A4JNR7   A0A2W1BP50   + More
Q08JX1   A0A2H1WP54   A0A2A4JML0   B7VCC3   A0A219LVV6   A0A2A4JP76   A0A194Q8Y6   A0A2W1BYI3   A0A1E1WTA0   A0A194RKW6   B7VCC2   F6K708   A0A2H1W493   A0A219LVU7   A0A219LVV5   A0A0N1IB53   A0A194Q8R2   A0A194Q8S9   A0A0N1IIN7   A0A212ETI7   A0A0N1ICG2   A0A212FE21   A0A2W1BV74   A0A0L7LLE8   A0A2A4JKE1   A0A219LWI3   H9JIU6   A0A0L7KR40   A0A2H1WT12   A0A0N1PH39   A0A3S2NR20   A0A219LVU2   A0A194Q7A2   A0A2A4K9C7   A0A0N0PDC8   A0A212FJT7   A0A2H1VP74   A0A2H1W9B5   B4N4S4   B4PH14   A0A0J9RZ63   B4QQB0   Q9VVV1   B3NDV9   B3M7Q7   A0A1B0CE89   A0A212EIS2   B4IFY0   T1P9F7   W8BUZ2   W8BEM3   A0A1W4UQR3   A0A1W4XR54   A0A1I8MCL2   A0A2P8ZMT4   A0A067RF87   A0A0P5K0P6   A0A0N8B5M4   A0A0P5W6R4   A0A0P5TF11   A0A0P6C109   A0A3B0JT56   A0A0M4EDJ3   B4IYD0   A0A1L8DXM9   A0A1L8DXI7   A0A1L8DPN4   A0A164USM9   Q29DJ9   B4H6U2   A0A1B0D5G0   A0A1A9YID0   A0A1B0C252   B4N4S6   A0A1A9UG98   D3TPG4   A0A0P5FLY5   A0A1B0FEL1   B4KZ79   Q29DK1   B4H6U4   A0A0P5L6U2   A0A0P5JV63   A0A0P5RYT1   A0A0P5S977   A0A0P5NE77   A0A0P5S216   A0A0N8CAS7   A0A0P5NWM0   A0A0P5NP42   A0A0P5S6M9  

KEGG

767621    no KO assigned | (RefSeq) Nuc; alkaline nuclease

GO

GO:0003676   GO:0016787   GO:0046872   GO:0004519   GO:0006412   GO:0008168   GO:0009311   GO:0016021   GO:0004573   GO:0006468   GO:0004713   GO:0007169   GO:0016020   GO:0016876   GO:0043039  

PANTHER

PTHR13966   PTHR10412  

Length:

151

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.31144

Exp number, first 60 AAs:

0.30238

Total prob of N-in:

0.38359

outside

1  -  151

 

 

Pi

191.478231

Theta

172.005148

Tajima's D

0.23215

CLR

0

CSRT

0.430428478576071

Interpretation

Uncertain