SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO07915
Annotation
PREDICTED:_alkaline_nuclease_isoform_X1_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 1.178
 

Sequence

CDS
ATGGAAAAAGTAAAACAGACTTCGGAAGCAACAAAAACATCAAAACTCCGTGCACGCATTGGTGAAGCAGGATATAATACTACTGTTTACACGGGAACCTTCGGCGTAACCCAACTACGGGACCAAAATGGCCAACTTGTTGATATTTACCTTTACCGGGACACTAACAATAACCCTCAGATACCTGTTCCGTTGTACTTTTACAAAGTTGTGTATGAGCCTGTCCTACAAAAGGGCACAGCTTTTGTGGCGATAAACAACCCGTACTACACTGAAACTGAAGTACGCGCCTTGCAATTCTGCACTGACCACTGCCGCAACAACACCGCGTTCAACTGGATTGGCTGGCAACCAGATCGAATCGACATCGGGTACAGCTTCTGCTGTACCATCGAAGACTTTAGACGGGCTGTGCCGCATTTGCCAGACTTTAATGTTACCGGGCTTTTGTACTGA
Protein
MEKVKQTSEATKTSKLRARIGEAGYNTTVYTGTFGVTQLRDQNGQLVDIYLYRDTNNNPQIPVPLYFYKVVYEPVLQKGTAFVAINNPYYTETEVRALQFCTDHCRNNTAFNWIGWQPDRIDIGYSFCCTIEDFRRAVPHLPDFNVTGLLY

Summary

EMBL
ODYU01000364    SOQ35022.1    GDQN01002889    JAT88165.1    KM229551    AKB95590.1    + More
BABH01000729    NWSH01000988    PCG73224.1    KZ149944    PZC76832.1    AB254196    BAF33251.1    ODYU01009979    SOQ54756.1    PCG73221.1    FM253096    CAR92522.1    KM229550    AKB95589.1    PCG73222.1    KQ459324    KPJ01440.1    PZC76833.1    GDQN01000872    JAT90182.1    KQ460045    KPJ18059.1    FM253095    CAR92521.1    HM357845    AEA76311.1    ODYU01006163    SOQ47776.1    KM229544    AKB95583.1    KM229545    AKB95584.1    KQ460202    KPJ17193.1    KQ459299    KPJ01927.1    KPJ01928.1    KPJ17191.1    AGBW02012569    OWR44806.1    KQ458751    KPJ05311.1    AGBW02008987    OWR51970.1    KZ149927    PZC77534.1    JTDY01000675    KOB76267.1    NWSH01001168    PCG72289.1    KM229547    AKB95586.1    BABH01023166    JTDY01007018    KOB65521.1    ODYU01010450    SOQ55574.1    KQ460396    KPJ15353.1    RSAL01000132    RVE46356.1    KM229548    AKB95587.1    KQ459580    KPI99275.1    NWSH01000015    PCG80821.1    KPJ15345.1    AGBW02008242    OWR53970.1    ODYU01003633    SOQ42630.1    ODYU01007039    SOQ49432.1    CH964095    EDW79148.1    CM000159    EDW95384.1    CM002912    KMZ00475.1    CM000363    EDX11016.1    AE014296    AY113510    AAF49206.1    AAM29515.1    CH954178    EDV52313.1    CH902618    EDV40985.1    AJWK01008671    AGBW02014574    OWR41393.1    CH480834    EDW46567.1    KA645411    AFP60040.1    GAMC01009439    JAB97116.1    GAMC01009438    JAB97117.1    PYGN01000014    PSN57821.1    KK852672    KDR18788.1    GDIQ01191520    JAK60205.1    GDIQ01210467    GDIP01099360    JAK41258.1    JAM04355.1    GDIP01090536    JAM13179.1    GDIP01127749    JAL75965.1    GDIP01022692    JAM81023.1    OUUW01000002    SPP76536.1    CP012525    ALC43684.1    CH916366    EDV97603.1    GFDF01002908    JAV11176.1    GFDF01002907    JAV11177.1    GFDF01005662    JAV08422.1    LRGB01001574    KZS11632.1    CH379070    EAL30415.1    CH479215    EDW33530.1    AJVK01011750    AJVK01011751    AJVK01011752    JXJN01024350    EDW79150.1    EZ423316    ADD19592.1    GDIQ01255922    JAJ95802.1    CCAG010013884    CH933809    EDW18905.1    EAL30413.1    EDW33532.1    GDIQ01199212    JAK52513.1    GDIQ01199210    JAK52515.1    GDIQ01099449    JAL52277.1    GDIQ01099446    JAL52280.1    GDIQ01143782    JAL07944.1    GDIQ01098041    JAL53685.1    GDIQ01098043    JAL53683.1    GDIQ01143783    JAL07943.1    GDIQ01143785    JAL07941.1    GDIQ01098044    JAL53682.1   
Pfam
PF01223   Endonuclease_NS        + More
PF09243   Rsm22
PF16923   Glyco_hydro_63N
PF03200   Glyco_hydro_63
Interpro
IPR040255   Non-specific_endonuclease        + More
IPR001604   DNA/RNA_non-sp_Endonuclease       
IPR020821   Extracellular_endonuc_su_A       
IPR015324   Ribosomal_Rsm22-like       
IPR029063   SAM-dependent_MTases       
IPR038518   Glyco_hydro_63N_sf       
IPR031631   Glyco_hydro_63N       
IPR008928   6-hairpin_glycosidase_sf       
IPR012341   6hp_glycosidase-like_sf       
IPR031335   Glyco_hydro_63_C       
IPR004888   Glycoside_hydrolase_63       
SUPFAM
SSF53335   SSF53335        + More
SSF48208   SSF48208       
Gene 3D

Ontologies

Topology

Length:
151
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.31144
Exp number, first 60 AAs:
0.30238
Total prob of N-in:
0.38359
outside
1  -  151
 
 

Population Genetic Test Statistics

Pi
191.478231
Theta
172.005148
Tajima's D
0.23215
CLR
0
CSRT
0.430428478576071
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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