Gene

KWMTBOMO07914  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA001174

Annotation

PREDICTED:_CRAL-TRIO_domain-containing_protein_C3H8.02_[Papilio_xuthus]

Location

Bomo_Chr13(-):10015209-10017019      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.087 PlasmaMembrane   Reliability : 1.183

CDS

ATGGCTGAAGAACTAAAGCCCGTAAATGAAGAAGACTTAAAGCAATTGAAAGAACGTATGAATCTTATAGCCAGTGCAGACCCAGCTCAGTATCATAACAGTTATTCTCTCAAAAGATATTTGCGTGCATTCCATACGGTCGACAATGCATTCCAGGCGATCCTTAAAACAAATAAGTGGAGAGTAGAATATGGAGTTGCTGATTTACACAATAATAAAGAACTAATAGAAAAATATTCTGATAAAGCTAAAGTGCTCAGACACAGGGATGCCATCGGAAGACCGATTATATACATTCCAGCCAAGAACTATAACTCTAGTGATAGGAACATTGATGAGTTAACGAAATTCATTGTCTATTGCTTGGAAGTTGCAAGTAATAAATGTTTTGAAGAAGTGGTGGACAACTTGTGTATTGTTTTTGACTTGAATAATTTCACACTATCTTGCATGGATTATCAAATATTGAAGAACTTAATATGGTTGCTTAGTCGTCACTATCCTGAGAGGCTAGGAGTTTGCCTCATAATCAATGCCCCCACATTTTTCTCCGGATGTTGGACTGTAATCAAAGGATGGCTGGATGAGAACACAGCTGGTAAGGTGACCTTTGTGAGCTCAGAGATGGATCTCTGTAAATACTTCATACCTGATATATTGCCAACTGATATGTAA

Protein

MAEELKPVNEEDLKQLKERMNLIASADPAQYHNSYSLKRYLRAFHTVDNAFQAILKTNKWRVEYGVADLHNNKELIEKYSDKAKVLRHRDAIGRPIIYIPAKNYNSSDRNIDELTKFIVYCLEVASNKCFEEVVDNLCIVFDLNNFTLSCMDYQILKNLIWLLSRHYPERLGVCLIINAPTFFSGCWTVIKGWLDENTAGKVTFVSSEMDLCKYFIPDILPTDM

Uniprot

H9IV94   A0A1E1WMG5   A0A194Q935   A0A212ENW5   A0A0N0PDK9   A0A2W1BR92   + More
A0A2A4JMC1   A0A3S2TLP4   A0A2H1V2F7   A0A1B6KED9   A0A1B6GBS1   A0A1S3DEI2   A0A2P8YF22   A0A1B6C4H8   A0A067RDT6   A0A2J7RKM3   A0A0K8TTA3   T1PAC8   W8BAX7   A0A1Q3FJK7   A0A0L0CFU3   A0A1B0CSG4   A0A1L8EE79   Q17J45   J3JW84   B0WM86   U5EQN3   A0A1A9Y7A2   A0A1B0AU92   A0A0K8VUG9   A0A023EK32   A0A1I8NMG9   A0A182G517   A0A1A9Z678   D3TNE0   A0A034VIV8   A0A1A9VTY2   E0VKH0   A0A1L8DZ14   B4LEB9   A0A1W4XUN5   B4IYW3   B4KWL0   A0A0M4EFI1   B4N6I2   A0A3B0J5Y3   E9H7X8   A0A0P5IXS7   A0A0N7ZTJ8   Q29E35   B4H403   A0A0P5FR55   B3M7F1   B4PCW1   B4HTJ1   B4QP13   B3NF22   Q8I941   A0A1W4VP46   A0A1B6JHH7   A0A293LCF1   A0A0L7KQE8   T1IRK1   L7M5M6   A0A131YIV6   A0A023GGC3   A0A2R5L3V9   A0A131XBH1   A0A0K8R9L6   B7P8W8   A0A0P6BQU3   A0A1E1XR26   A0A1S3KEN7   L7MDB6   R7V1D8   A0A0N8D1J8   A0A2C9K1M8   A0A2T7PNE3   A0A3M6U023   A0A2B4SXT5   H3A3Z3   C3Y3C7   A0A3S0ZYJ5   A0A167E6P7   G1XC59   A0A1E3QD63   A0A1U7LHK9   S8A2Y7  

Pubmed

19121390    26354079    22118469    28756777    29403074    24845553    + More
26369729    25315136    24495485    26108605    17510324    22516182    23537049    24945155    26483478    20353571    25348373    20566863    17994087    21292972    15632085    17550304    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    26227816    25576852    26830274    28049606    29209593    23254933    15562597    30382153    9215903    18563158    21909256    27535936    24244185   

EMBL

BABH01000733    BABH01000734    GDQN01002937    JAT88117.1    KQ459299    KPJ01929.1    + More
AGBW02013607    OWR43173.1    KQ460202    KPJ17194.1    KZ149944    PZC76831.1    NWSH01000988    PCG73225.1    RSAL01000063    RVE49505.1    ODYU01000364    SOQ35023.1    GEBQ01030157    GEBQ01027633    GEBQ01022557    GEBQ01002318    JAT09820.1    JAT12344.1    JAT17420.1    JAT37659.1    GECZ01009895    JAS59874.1    PYGN01000650    PSN42833.1    GEDC01029089    JAS08209.1    KK852761    KDR17021.1    NEVH01002728    PNF41339.1    GDAI01000222    JAI17381.1    KA645649    AFP60278.1    GAMC01016283    GAMC01016281    GAMC01016279    GAMC01016277    JAB90276.1    GFDL01007341    JAV27704.1    JRES01000452    KNC31077.1    AJWK01026045    GFDG01001823    JAV16976.1    CH477235    EAT46665.1    APGK01003817    APGK01024678    BT127502    KB740558    KB735439    KB632357    AEE62464.1    ENN80365.1    ENN83365.1    ERL93479.1    DS231995    EDS30920.1    GANO01004184    JAB55687.1    JXJN01003570    GDHF01009782    JAI42532.1    JXUM01125666    GAPW01004131    KQ566972    JAC09467.1    KXJ69686.1    JXUM01042845    KQ561341    KXJ78906.1    CCAG010019450    EZ422942    ADD19218.1    GAKP01016885    JAC42067.1    DS235243    EEB13850.1    GFDF01002381    JAV11703.1    CH940647    EDW70095.1    CH916366    EDV97671.1    CH933809    EDW19639.1    CP012525    ALC43015.1    CH964161    EDW79971.1    OUUW01000002    SPP77125.1    GL732602    EFX72107.1    GDIQ01208877    JAK42848.1    GDIP01213953    JAJ09449.1    CH379070    EAL30228.1    CH479208    EDW31118.1    GDIQ01259074    JAJ92650.1    CH902618    EDV39849.1    CM000159    EDW93865.1    CH480817    EDW50262.1    CM000363    CM002912    EDX09008.1    KMY97226.1    CH954178    EDV50364.1    AE014296    BT010100    AAN12226.1    AAQ22569.1    GECU01008950    JAS98756.1    GFWV01000966    MAA25696.1    JTDY01007018    KOB65522.1    JH431367    GACK01005877    JAA59157.1    GEDV01010082    JAP78475.1    GBBM01002397    JAC33021.1    GGLE01000036    MBY04162.1    GEFH01005073    JAP63508.1    GADI01006669    JAA67139.1    ABJB010501444    DS660824    EEC03040.1    GDIP01012697    JAM91018.1    GFAA01001667    JAU01768.1    GACK01003217    JAA61817.1    AMQN01019651    KB296063    ELU12302.1    GDIP01077863    JAM25852.1    PZQS01000003    PVD34943.1    RCHS01002515    RMX46957.1    LSMT01000012    PFX33368.1    AFYH01184417    AFYH01184418    GG666483    EEN65194.1    RQTK01000516    RUS78342.1    CP014502    ANB13713.1    ADOT01000134    EGX49473.1    KV454290    ODQ75621.1    LXFE01003829    OLL22146.1    AQGS01000759    EPS37104.1   

Proteomes

UP000005204    UP000053268    UP000007151    UP000053240    UP000218220    UP000283053    + More
UP000079169    UP000245037    UP000027135    UP000235965    UP000095301    UP000037069    UP000092461    UP000008820    UP000019118    UP000030742    UP000002320    UP000092443    UP000092460    UP000069940    UP000249989    UP000095300    UP000092445    UP000092444    UP000078200    UP000009046    UP000008792    UP000192223    UP000001070    UP000009192    UP000092553    UP000007798    UP000268350    UP000000305    UP000001819    UP000008744    UP000007801    UP000002282    UP000001292    UP000000304    UP000008711    UP000000803    UP000192221    UP000037510    UP000001555    UP000085678    UP000014760    UP000076420    UP000245119    UP000275408    UP000225706    UP000008672    UP000001554    UP000271974    UP000008784    UP000094385    UP000186594    UP000015100   

PRIDE

H9IV94    Q8I941   

Pfam

PF00650   CRAL_TRIO        + More
PF00075   RNase_H
PF03765   CRAL_TRIO_N

Interpro

IPR001251   CRAL-TRIO_dom        + More
IPR036865   CRAL-TRIO_dom_sf       
IPR036273   CRAL/TRIO_N_dom_sf       
IPR036397   RNaseH_sf       
IPR002156   RNaseH_domain       
IPR012337   RNaseH-like_sf       
IPR011074   CRAL/TRIO_N_dom       

SUPFAM

SSF46938   SSF46938        + More
SSF52087   SSF52087       
SSF53098   SSF53098       

Gene 3D

3.40.525.10     3.30.420.10    

CDD

cd00170  SEC14

ProteinModelPortal

H9IV94   A0A1E1WMG5   A0A194Q935   A0A212ENW5   A0A0N0PDK9   A0A2W1BR92   + More
A0A2A4JMC1   A0A3S2TLP4   A0A2H1V2F7   A0A1B6KED9   A0A1B6GBS1   A0A1S3DEI2   A0A2P8YF22   A0A1B6C4H8   A0A067RDT6   A0A2J7RKM3   A0A0K8TTA3   T1PAC8   W8BAX7   A0A1Q3FJK7   A0A0L0CFU3   A0A1B0CSG4   A0A1L8EE79   Q17J45   J3JW84   B0WM86   U5EQN3   A0A1A9Y7A2   A0A1B0AU92   A0A0K8VUG9   A0A023EK32   A0A1I8NMG9   A0A182G517   A0A1A9Z678   D3TNE0   A0A034VIV8   A0A1A9VTY2   E0VKH0   A0A1L8DZ14   B4LEB9   A0A1W4XUN5   B4IYW3   B4KWL0   A0A0M4EFI1   B4N6I2   A0A3B0J5Y3   E9H7X8   A0A0P5IXS7   A0A0N7ZTJ8   Q29E35   B4H403   A0A0P5FR55   B3M7F1   B4PCW1   B4HTJ1   B4QP13   B3NF22   Q8I941   A0A1W4VP46   A0A1B6JHH7   A0A293LCF1   A0A0L7KQE8   T1IRK1   L7M5M6   A0A131YIV6   A0A023GGC3   A0A2R5L3V9   A0A131XBH1   A0A0K8R9L6   B7P8W8   A0A0P6BQU3   A0A1E1XR26   A0A1S3KEN7   L7MDB6   R7V1D8   A0A0N8D1J8   A0A2C9K1M8   A0A2T7PNE3   A0A3M6U023   A0A2B4SXT5   H3A3Z3   C3Y3C7   A0A3S0ZYJ5   A0A167E6P7   G1XC59   A0A1E3QD63   A0A1U7LHK9   S8A2Y7  

PDB

3Q8G     E-value=2.0361e-09,     Score=146

KEGG

101737065    no KO assigned | (RefSeq) CRAL-TRIO domain-containing protein C589.09, mitochondrial

GO

GO:0017137   GO:0005794   GO:0004523   GO:0003676   GO:0008526  

Length:

224

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.897169999999999

Exp number, first 60 AAs:

0

Total prob of N-in:

0.06337

outside

1  -  224

 

 

Pi

223.309627

Theta

219.655013

Tajima's D

0.074138

CLR

0.18389

CSRT

0.390630468476576

Interpretation

Uncertain