Silkworm Genome Informatics Database

Gene

KWMTBOMO07900

Annotation

PREDICTED:_piggyBac_transposable_element-derived_protein_4-like_[Bombyx_mori]

Location

Bomo_Chr13(+):9623149-9625378 View in EpiBrowser

Location in the cell

Cytoplasmic Reliability : 2.535

CDS

ATGTCTGTTTTCTTGCACGCTGTCTGCTGGCACGCCTGCACGGACCGCTCAGAAAACCTGTCATGGAACTTCTGGGGTTCACCTTCTTCTACCACTTCAACAACGGCACCTGGCTCTGGGAGGAGCGCTTACGAGTTGGATGTTGACGTAGATACCGAGCGCGACTTCAAAGAGCCTGGCGAAGGCAGCGATGTTGAGCCTGAAGAATATCCTGCAAATATTAACGTGGTACCAAGGAAAGTCGATGAATTTCCGGTGGACGGTGACAGCTTAGCGGCCCTTTCGCTAGTTGAGGCGATAAACAGTATCGATGCTGAAGCCGACTCAGCCCTTCGGACCGTTATAGATCCCGGACCCGATCAAGATTTGCTCAGCTTTGATTGGCGATGCGATCCGGAGAATTTTGAGGGAGTCAGGGAGGTATTTACTGTTCCGTCTACTGGCCCAACCGTTGAAAGCGCGGAGCTAACTCCCTTGGGAGTCTTTCTGAAAATTTGGGATGCCGATATTATCGCCCACATAGTCCGTGAGACTAATCGTTATAGTGGAGAAATGTTAAGGGTAACCAACAACGTGGAGCGGGAGTATTGGTATCCCAAATTGGATGAACTCCGAATTGGCAATTTCGGGGACATCATGCCCTACAACCGGTTTTTGGTGATGAAATATTGTCTACATTTTGTAGACAACGCCTCCTTGCCCGTGCCTTCCAACAGACTCGACAAAATTATTCCCATCATTGAGCACCTAAATAAAAAATTTAGCTCTCTATACATACTTGAGCAAAATGTGGCAATTGATGAGTCACTCCTTTTATGGAAGGGGCGACTCAGTTTTTCCCAAAAAATTGCCACTAAAAAAGCGAGAGCACATATAAAGAGCTATGAGTTGTGCGAGTCGAGGACCGGCTATTTGTGGAGGATGGAGGTTTACTCGGGTAAGGGGCACGTTCATGCTGCGCAGCACGACCAAGGACTTGAGTATAGTTGTGTGGATGGACAAGAACGTAATGGCAATGATCTCCACATTCCACCAAGTACAAATCGGCTACAACCTCTCTCTATAGATCATAAAGATCAAATGCTGCAAGCCTACCCCATGGAGAGAGTGAGAAATACCATATGGTATAAAAAACTTTTCCGCCGATTGGTCAATGTGTTGTAA

Protein

MSVFLHAVCWHACTDRSENLSWNFWGSPSSTTSTTAPGSGRSAYELDVDVDTERDFKEPGEGSDVEPEEYPANINVVPRKVDEFPVDGDSLAALSLVEAINSIDAEADSALRTVIDPGPDQDLLSFDWRCDPENFEGVREVFTVPSTGPTVESAELTPLGVFLKIWDADIIAHIVRETNRYSGEMLRVTNNVEREYWYPKLDELRIGNFGDIMPYNRFLVMKYCLHFVDNASLPVPSNRLDKIIPIIEHLNKKFSSLYILEQNVAIDESLLLWKGRLSFSQKIATKKARAHIKSYELCESRTGYLWRMEVYSGKGHVHAAQHDQGLEYSCVDGQERNGNDLHIPPSTNRLQPLSIDHKDQMLQAYPMERVRNTIWYKKLFRRLVNVL

Uniprot

A0A3S2TTE3 A0A2A4IY54 A0A2W1B9N8 A0A3S2LRG0 A0A2A4K616 A0A3S2NWG9 + More
A0A0L7L984 A0A3S2TF86 A0A2W1BDM1 A0A2J7RTD9 A0A2J7Q8N9 A0A3S2NGQ2

Pubmed

28756777 26227816

EMBL

RSAL01000003 RVE54733.1 NWSH01005605 PCG64100.1 KZ150197 PZC72319.1 + More
RSAL01000024 RVE52239.1 NWSH01000091 PCG79681.1 RSAL01000132 RVE46376.1 JTDY01002247 KOB71806.1 RSAL01000201 RVE44423.1 KZ150113 PZC73302.1 NEVH01000004 PNF44102.1 NEVH01016950 PNF24933.1 RSAL01000045 RVE50637.1

Proteomes

UP000283053 UP000218220 UP000037510 UP000235965

Pfam

PF13843 DDE_Tnp_1_7 + More
PF13842 Tnp_zf-ribbon_2

Interpro

IPR018159   Spectrin/alpha-actinin        + More
IPR029526   PGBD
IPR032718   PGBD4_C_Znf-ribbon

ProteinModelPortal

A0A3S2TTE3 A0A2A4IY54 A0A2W1B9N8 A0A3S2LRG0 A0A2A4K616 A0A3S2NWG9 + More
A0A0L7L984 A0A3S2TF86 A0A2W1BDM1 A0A2J7RTD9 A0A2J7Q8N9 A0A3S2NGQ2

KEGG

105841906 no KO assigned | (RefSeq) piggyBac transposable element-derived protein 4-like

GO

GO:0016021

Length:

387

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.000960000000000002

Exp number, first 60 AAs:

0.00037

Total prob of N-in:

0.00435

outside

1 - 387

Pi

237.615183

Theta

202.884946

Tajima's D

0.778159

CLR

0.001998

CSRT

0.598770061496925

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics