SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO07896
Pre Gene Modal
BGIBMGA000965
Annotation
PREDICTED:_brain_tumor_protein_[Bombyx_mori]
Location
Bomo_Chr13(+):9588029-9602970      View in EpiBrowser
Location in the cell
Cytoplasmic   Reliability : 2.195
 

Sequence

CDS
ATGGAGGAAATGAACGGGGAGCTTTATGGTGATGGTTTAGTTAGTCTTGGAGATGAGGGCTCTTTGGAATCCAATGATAACGGTAAACATGAGCAGGATTGCAAAATTTGCGACAATAAGTTGTGCAGTCCACGTGTATTGTCTTGCCTTCATGTATTCTGTGAAGCCTGCATTGACAAGTTGATGGTTAATGAAGCTGGTGATTCACTTAAATTTGATTTGGCTGTAGAATGTCCAATATGTAAACAGGAAACAAAGATGTTGGGTGGTGGAGCTGCTTCACTTCCTTCAGACTATGTCCTCACAAACATATTGGATGTTTCTACCATGGATCAATCGGTCGTCTGTACTTGTTGCAAGAGTAAGGAACCAGCAGTTGCCAGGTGTACTGATTGTTCGCATTTTCTCTGCTCGAATTGTAATTCTGCCCATGAATTTATGAGATGCTTTGAAAACCATCGTGTTGTGCCATTTGATGCCCTAAGATCTTCTAAGGAGAAAACGGCTGTTCACAAGCCTATTTTCTGTACCCGACATGCTGGAGAAAGTCTTAAATTTTATTGCTGTGAGTGTGAAGTAGGTGCTTGCACTGAATGTTTAACAGTGGACCATAAAGTGGGAGAACATCGCTGCGAACGTATTGTCGACGCGGAACAAAATATTCGCGCAGAATTAAGAAATTTCATCGTCGAAGCTAACACTCGCGCTGCCACAGCTGGTAGTGCATCTGCTAAACTTGATGATGCATTAGGGGACTTGCAACGTCAGCGTGATGATGCCGAGAGTGTTATCAACGAGGCTTTCCGTGCTTATCAAACAGCTCTTGAAAGAAGAAGAGATAAAGCTCTCGAAGAGCTTGAACGTCTACACAAAGAGAGAGAGTTGAAAGTAATGGATCTCTTTGATCGTGTAGACAAAACTGTGCAACGAATTGATTGTGCATGTAAATTCACAGCTAGACTTTTGCATTGTGGAGATGGCACTGAAATTGTTATGTTGAAAAAAACTGTAACCAGTCAATTTGCACGATTATTGGAAGGCGCACCTGAGTTTGATGTTAATTATTCAGTGGAGTTCATTAGCAAAATGGATAGCTTTGATGCGAATGTCAATGACACTTTTGGCACATTCCGTACCGAAGCAACTATAGCTGAAGAAAGAAAACGTGCCAGTGAATCTTCTGCCATTGCATCCATACCGTCAAATTCACATTCACCTGCTGTATCTGTAACGAACGCGCCCGTTTTCGATGATTTCCCTCCCATTGGCGTCCGACGCGTGACTGGAGTGTCTGGCGTCGGTAGCATGGTTGGCGTTCCCGGAGTTGGAGTGGGCGGCATGGGCGTGGGACCAGTGCCTGGAGTGGGTGTCACTAACACAAGCGTCATTCCTGGAGGCGTTAATCTCAACAACGTTGCAGGCGTTGGTGGTGTTCCTCCTCTCACTTCTATGGTTGAGTACAATTTGCAACAGTTGGCTAGTATAGCTGAAAAAGACGTACCACCCCCTCAGCACACATCACCTGCTCCTTCTTTTACATTGGCCGAGTTATTAGCTGGCGATCTGAACTCTTCTCAAGCATATAACAATCTTCAAGCTCTTGCTAAACTGGGTTTGAACACTGAAGTTAATGGCTTCGGGGGTGTAGGCGGAGTCGGTGGGGTCGGTGGAATGGGTGGCGTAGGACCTCGAGGCGTATCGCCGGGAAGACCACTGCTGACACCTGCTGAGGAAGCTGCACTTGTAGCGCCCCCGGCACCCCTAGTTCGTGCTACCAAAGCTACACCTATGCATATCAGATTTAAATTTGGACAACTCGGAGGTGGCAAAGGACAATTTAATTCGCCTCATGGCTTCTGTCTCGGAAACGATGAAGATATTATTGTTGCCGACACTAACAATCACCGCATAACAGTCTTCGATAAGTCGGGCACTCACAAGTTTAACTTTGGCAATGCGGGCAAGGAAGAGGGTCAATTATGGTATCCCCGAAAAGTAGCAGTTGTTCGCGCAACTGGAAAATTCGTTGTGTGCGATCGCGGTAATGAAAGGTCGCGAATGCAAATTTTCACCAAAAATGGACATTTCCTGAAGAAAATAGCGGTGCGGTTCATCGATATCGTCGCTGGTTTGGCCGTTACTGCTGAAGGATTGATTGTCGCGGTTGACAGTGTCACACCAACTGTATTTATACTTTCTGAAGAGGGTGAACTCATGAGTTGGTTTGATTGCAGTGAGTGCATGCGAGAACCATCTGATATTGCCATCAGTGGCAAGGAATTTTACGTCTGCGATTTCAAAGGTCACTGCGTTGTTGTATTCGACGAGGATGGTCGTTTCCTACGTCGTATCGGTTGCGAGAACGTGACCAATTTCCCGAACGGCATCGACGTTTCGGACGCAGGAGATGTACTGATCGGAGACTCGCACGGCAATAAGTTCCACGTTGCTGTATTTTCTCGTGTTGGCGTGCTCGTCACTGAATTTGAATGCCCTTATGTAAAGGTTTCGCGTTGCTGCGGTTTGAAAATAACTTCTGAAGGATACATTGTTACTCTGGCTAAGAATAATCATCACGTTCTGGTCCTCAACACCCTTTACATTGTTTGA
Protein
MEEMNGELYGDGLVSLGDEGSLESNDNGKHEQDCKICDNKLCSPRVLSCLHVFCEACIDKLMVNEAGDSLKFDLAVECPICKQETKMLGGGAASLPSDYVLTNILDVSTMDQSVVCTCCKSKEPAVARCTDCSHFLCSNCNSAHEFMRCFENHRVVPFDALRSSKEKTAVHKPIFCTRHAGESLKFYCCECEVGACTECLTVDHKVGEHRCERIVDAEQNIRAELRNFIVEANTRAATAGSASAKLDDALGDLQRQRDDAESVINEAFRAYQTALERRRDKALEELERLHKERELKVMDLFDRVDKTVQRIDCACKFTARLLHCGDGTEIVMLKKTVTSQFARLLEGAPEFDVNYSVEFISKMDSFDANVNDTFGTFRTEATIAEERKRASESSAIASIPSNSHSPAVSVTNAPVFDDFPPIGVRRVTGVSGVGSMVGVPGVGVGGMGVGPVPGVGVTNTSVIPGGVNLNNVAGVGGVPPLTSMVEYNLQQLASIAEKDVPPPQHTSPAPSFTLAELLAGDLNSSQAYNNLQALAKLGLNTEVNGFGGVGGVGGVGGMGGVGPRGVSPGRPLLTPAEEAALVAPPAPLVRATKATPMHIRFKFGQLGGGKGQFNSPHGFCLGNDEDIIVADTNNHRITVFDKSGTHKFNFGNAGKEEGQLWYPRKVAVVRATGKFVVCDRGNERSRMQIFTKNGHFLKKIAVRFIDIVAGLAVTAEGLIVAVDSVTPTVFILSEEGELMSWFDCSECMREPSDIAISGKEFYVCDFKGHCVVVFDEDGRFLRRIGCENVTNFPNGIDVSDAGDVLIGDSHGNKFHVAVFSRVGVLVTEFECPYVKVSRCCGLKITSEGYIVTLAKNNHHVLVLNTLYIV

Summary

Uniprot
H9IUN5   A0A2W1BQK7   A0A2H1W710   A0A3S2M2K1   A0A2A4J989   A0A0L7L736   + More
Pubmed
19121390    28756777    26227816   
EMBL
BABH01000785    BABH01000786    KZ149978    PZC75875.1    ODYU01006735    SOQ48848.1    + More
RSAL01000063    RVE49520.1    NWSH01002427    PCG68326.1    JTDY01002490    KOB71307.1   
Proteomes
UP000005204    UP000283053    UP000218220    UP000037510   
PRIDE
H9IUN5   
Pfam
PF00097   zf-C3HC4        + More
PF01436   NHL
PF00643   zf-B_box
Interpro
IPR018957   Znf_C3HC4_RING-type        + More
IPR013083   Znf_RING/FYVE/PHD       
IPR011042   6-blade_b-propeller_TolB-like       
IPR017907   Znf_RING_CS       
IPR001258   NHL_repeat       
IPR001841   Znf_RING       
IPR000315   Znf_B-box       
IPR003649   Bbox_C       
IPR013017   NHL_repeat_subgr       
Gene 3D
2.120.10.30     3.30.40.10    
CDD
cd00021  BBOX
ProteinModelPortal
H9IUN5   A0A2W1BQK7   A0A2H1W710   A0A3S2M2K1   A0A2A4J989   A0A0L7L736   + More
PDB
5EX7     E-value=2.67386e-44,     Score=453

Ontologies

KEGG
101746148    no KO assigned | (RefSeq) brain tumor protein
GO
GO:0008270   GO:0046872   GO:0005622   GO:0005515   GO:0006418   GO:0004819   GO:0006425   GO:0006412   GO:0016876   GO:0043039  

Topology

Length:
869
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.62146
Exp number, first 60 AAs:
0.00012
Total prob of N-in:
0.00035
outside
1  -  869
 
 

Population Genetic Test Statistics

Pi
183.353619
Theta
176.62029
Tajima's D
0.069072
CLR
0.336582
CSRT
0.387030648467577
Interpretation
Uncertain
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