Gene

KWMTBOMO07895  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA001186

Annotation

signal_recognition_particle_9_kDa_protein_[Bombyx_mori]

Location

Bomo_Chr13(-):9583013-9584408      View in EpiBrowser

Full name

Signal recognition particle 9 kDa protein      

Location in the cell

Nuclear   Reliability : 1.924

CDS

ATGACTTTTGTTCCAAATTGGGAAGAGTTTGAGAAAGCCGCGGAAATGTTATATCTACAGGATCCAATAAATACTCGGTACAGTGTTAAATATTCACATTCAAAAGGTGCATTTAATGTCAAAATTACTGACAATAAAAAGTGCCTTCAATACAAAACAGAAGTACAGCAAGATGTTAGGAAAATAGATAAATTTATGTCAAATTTATTAAGACACATGGCATCAAATGATAACTAA

Protein

MTFVPNWEEFEKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDNKKCLQYKTEVQQDVRKIDKFMSNLLRHMASNDN

Description

Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane. SRP9 together with SRP14 and the Alu portion of the SRP RNA, constitutes the elongation arrest domain of SRP. The complex of SRP9 and SRP14 is required for SRP RNA binding.
Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane. Srp9 together with Srp14 and the Alu portion of the SRP RNA, constitutes the elongation arrest domain of SRP. The complex of Srp9 and Srp14 is required for SRP RNA binding (By similarity).

Similarity

Belongs to the SRP9 family.

Keywords

Complete proteome   Cytoplasm   Reference proteome   Ribonucleoprotein   RNA-binding   Signal recognition particle  

Feature

chain  Signal recognition particle 9 kDa protein

Uniprot

Q0N2S0   S4P9J8   A0A194RHB3   I4DKP5   A0A2H1W724   A0A2W1BQH2   + More
A0A0L7L751   A0A212FLK3   A0A195ES51   A0A026X5A3   F4X4T3   A0A151HXZ7   A0A158NWA7   A0A151X5D7   E9J4P9   K7IXH1   A0A0M9A1P7   A0A0L7RHG3   A0A310SHD4   N6T8Y4   A0A2A3EBB5   A0A087ZX45   A0A067QUA5   E9H7M0   A0A162QL24   A0A0P6H6E1   A0A0P6AFY6   A0A1W4WJG4   D6WEI1   E0VJL6   A0A023FCH7   A0A0P4VRZ5   L7M2X8   A0A2R7VTB1   A0A1E1WZC6   A0A1B0C7Y7   C9W1I3   A0A131XAT6   R4WDX5   A0A1L8DWA4   A0A023GHI2   B7Q3G1   A0A0K8R3B2   G3MS63   A0A0B6ZK09   A0A1B0D6S8   A0A2C9LYG7   A0A0C9QYE0   A0A023FDN5   T1G3X8   K1QCN0   A0A0L0CA93   A0A1S3J2R7   A0A0U1S8A1   B4PCC8   B3NF76   U5EWY8   A0A182NHU7   A0A336KRU5   A0A182QUZ1   A0A2L2YDD7   B3M5P8   B4N5I5   A0A182LVT2   A0A3B0JY23   A0A1W4VNW3   A0A182XYX0   A0A182UDI0   A0A182K2I4   A0A182SSA2   A0A0K8TP33   A0A182PQE4   B4LHS1   A0A2M3Z6S7   A0A2M4AKV1   W5JSS6   A0A182FF51   B4J109   A0A194ALS2   A0A087T497   B4KUP3   A0A182WJ75   A0A182UNX9   A0A182KRD9   A0A182X3Q3   Q7QJF6   A0A182I3B6   A0A182RSP2   Q29EP7   A0A1D2NI40   A0A132AKU1   B4QKY8   Q9VSC1   A0A2R5LGF4   A0A1L8ECN2   R7UCY1   B4HIX4   A0A1I8QCA2   A0A1I8MI14   C4A039  

Pubmed

19121390    23622113    26354079    22651552    28756777    26227816    + More
22118469    24508170    30249741    21719571    21347285    21282665    20075255    23537049    24845553    21292972    18362917    19820115    20566863    25474469    27129103    25576852    28503490    20650005    24029695    28049606    23691247    22216098    15562597    26131772    23254933    22992520    26108605    17994087    17550304    26561354    25244985    26369729    20920257    23761445    20966253    12364791    14747013    17210077    15632085    27289101    26555130    22936249    10731132    12537572    12537569    15901661    25315136    18563158   

EMBL

BABH01000786    DQ646411    ABH10801.1    GAIX01009030    JAA83530.1    KQ460205    + More
KPJ16967.1    AK401863    KQ459299    BAM18485.1    KPJ01947.1    ODYU01006735    SOQ48847.1    KZ149978    PZC75874.1    JTDY01002490    KOB71303.1    AGBW02007761    OWR54607.1    KQ981993    KYN31080.1    KK107020    QOIP01000006    EZA62594.1    RLU21255.1    GL888679    EGI58506.1    KQ976730    KYM76447.1    ADTU01027859    KQ982522    KYQ55468.1    GL768112    EFZ12203.1    AAZX01008493    KQ435794    KOX74103.1    KQ414591    KOC70259.1    KQ759902    OAD62010.1    APGK01039256    KB740969    KB631730    ENN76689.1    ERL85635.1    KZ288292    PBC29063.1    KK853004    KDR12602.1    GL732601    EFX72285.1    LRGB01000311    KZS19770.1    GDIQ01023541    JAN71196.1    GDIP01030186    JAM73529.1    KQ971318    EFA01427.1    DS235226    EEB13572.1    GBBI01000229    JAC18483.1    GDKW01001918    JAI54677.1    GACK01006624    JAA58410.1    KK854074    PTY10753.1    GFAC01006823    JAT92365.1    AJWK01000002    EZ406133    ACX53930.1    GEFH01005323    JAP63258.1    AK418023    BAN21238.1    GFDF01003391    JAV10693.1    GBBM01003223    GBBM01003222    JAC32195.1    ABJB010711986    DS849458    EEC13383.1    GADI01008465    GEFM01001796    JAA65343.1    JAP74000.1    JO844714    AEO36331.1    HACG01021215    CEK68080.1    AJVK01012151    GBZX01002950    JAG89790.1    GBBK01004486    JAC19996.1    AMQM01004537    KB096590    ESO03730.1    JH818869    EKC26510.1    JRES01000685    KNC29140.1    EU252366    ACD11935.1    CM000159    EDW93813.1    CH954178    EDV50418.1    GANO01001193    JAB58678.1    UFQS01000758    UFQS01000782    UFQT01000758    UFQT01000782    SSX06691.1    SSX06843.1    SSX27037.1    AXCN02000377    IAAA01014571    IAAA01014572    LAA06172.1    CH902618    EDV40682.1    CH964101    EDW79624.1    AXCM01001596    OUUW01000012    SPP86954.1    GDAI01001499    JAI16104.1    CH940647    EDW70646.1    GGFM01003482    MBW24233.1    GGFK01008056    MBW41377.1    ADMH02000549    ETN65965.1    CH916366    EDV96864.1    GELH01000788    GELH01000787    JAS03485.1    KK113352    KFM59936.1    CH933809    EDW18271.1    AAAB01008807    EAA04543.2    APCN01000204    CH379070    EAL30013.1    LJIJ01000038    ODN04646.1    JXLN01017561    KPM11622.1    CM000363    CM002912    EDX09621.1    KMY98249.1    AE014296    AY071180    GGLE01004423    MBY08549.1    GFDG01002318    JAV16481.1    AMQN01001758    KB305378    ELU01122.1    CH480815    EDW40628.1    GG666781    EEN41838.1   

Proteomes

UP000005204    UP000053240    UP000053268    UP000037510    UP000007151    UP000078541    + More
UP000053097    UP000279307    UP000007755    UP000078540    UP000005205    UP000075809    UP000002358    UP000053105    UP000053825    UP000019118    UP000030742    UP000242457    UP000005203    UP000027135    UP000000305    UP000076858    UP000192223    UP000007266    UP000009046    UP000092461    UP000001555    UP000092462    UP000076420    UP000015101    UP000005408    UP000037069    UP000085678    UP000002282    UP000008711    UP000075884    UP000075886    UP000007801    UP000007798    UP000075883    UP000268350    UP000192221    UP000076408    UP000075902    UP000075881    UP000075901    UP000075885    UP000008792    UP000000673    UP000069272    UP000001070    UP000054359    UP000009192    UP000075920    UP000075903    UP000075882    UP000076407    UP000007062    UP000075840    UP000075900    UP000001819    UP000094527    UP000000304    UP000000803    UP000014760    UP000001292    UP000095300    UP000095301    UP000001554   

PRIDE

Q0N2S0    Q9VSC1   

Pfam

PF05486   SRP9-21

Interpro

IPR039432   SRP9_dom        + More
IPR039914   SRP9/Srp21       
IPR009018   Signal_recog_particle_SRP9/14       
IPR008832   Signal_recog_particle_SRP9       

SUPFAM

SSF54762   SSF54762       

Gene 3D

3.30.720.10    

ProteinModelPortal

Q0N2S0   S4P9J8   A0A194RHB3   I4DKP5   A0A2H1W724   A0A2W1BQH2   + More
A0A0L7L751   A0A212FLK3   A0A195ES51   A0A026X5A3   F4X4T3   A0A151HXZ7   A0A158NWA7   A0A151X5D7   E9J4P9   K7IXH1   A0A0M9A1P7   A0A0L7RHG3   A0A310SHD4   N6T8Y4   A0A2A3EBB5   A0A087ZX45   A0A067QUA5   E9H7M0   A0A162QL24   A0A0P6H6E1   A0A0P6AFY6   A0A1W4WJG4   D6WEI1   E0VJL6   A0A023FCH7   A0A0P4VRZ5   L7M2X8   A0A2R7VTB1   A0A1E1WZC6   A0A1B0C7Y7   C9W1I3   A0A131XAT6   R4WDX5   A0A1L8DWA4   A0A023GHI2   B7Q3G1   A0A0K8R3B2   G3MS63   A0A0B6ZK09   A0A1B0D6S8   A0A2C9LYG7   A0A0C9QYE0   A0A023FDN5   T1G3X8   K1QCN0   A0A0L0CA93   A0A1S3J2R7   A0A0U1S8A1   B4PCC8   B3NF76   U5EWY8   A0A182NHU7   A0A336KRU5   A0A182QUZ1   A0A2L2YDD7   B3M5P8   B4N5I5   A0A182LVT2   A0A3B0JY23   A0A1W4VNW3   A0A182XYX0   A0A182UDI0   A0A182K2I4   A0A182SSA2   A0A0K8TP33   A0A182PQE4   B4LHS1   A0A2M3Z6S7   A0A2M4AKV1   W5JSS6   A0A182FF51   B4J109   A0A194ALS2   A0A087T497   B4KUP3   A0A182WJ75   A0A182UNX9   A0A182KRD9   A0A182X3Q3   Q7QJF6   A0A182I3B6   A0A182RSP2   Q29EP7   A0A1D2NI40   A0A132AKU1   B4QKY8   Q9VSC1   A0A2R5LGF4   A0A1L8ECN2   R7UCY1   B4HIX4   A0A1I8QCA2   A0A1I8MI14   C4A039  

PDB

6FRK     E-value=7.22554e-15,     Score=189

KEGG

778522    K03109 signal recognition particle subunit SRP9 | (RefSeq) Srp9; signal recognition particle 9 kDa p

PATHWAY

03060    Protein export - Bombyx mori (domestic silkworm)

GO

GO:0045900   GO:0005786   GO:0006614   GO:0008312   GO:0048500   GO:0006418   GO:0004819   GO:0006425   GO:0006412   GO:0016876   GO:0043039  

PANTHER

PTHR12834  

Subcellular location

Cytoplasm  

Length:

78

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.12152

outside

1  -  78

 

 

Pi

132.044015

Theta

150.852854

Tajima's D

-0.391959

CLR

3.175092

CSRT

0.273036348182591

Interpretation

Uncertain