SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO07894  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA001187
Annotation
PREDICTED:_transcription_factor_SPT20_homolog_[Bombyx_mori]
Location
Bomo_Chr13(-):9554529-9570898      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 4.066
 

Sequence

CDS
ATGGATGGTTTAATTCACGCGGCATTGGAAGCTGAGGTAATTCTTAACCGGGCAAAACATGTGAATTCAAATTTATCACAATTTGGCAGTGGTGTCACAGAGCATAAAATGACTTGGACCCATGATAAGATGCATCTTGCAGAATCAGTGGACGATACTAGAATGAAATTTCAGAGAAATTCGGTTGGTTCAGCATCTAAAGCTACTGAAAAATTTGACCTGTTCAAAAAGCTCCATGAACTTCACAATGAGTTAAGCAGAGATGAATCTTTGCAGGCCAACTATCAAGGTCTTAAGACAACATCTTATCTATTGGAAAAATTATTAGCCAATTACAATTTAAATACACTAATAATCAATTTATACCCTGGTAATAAAGGGTATTCATTATCTCTGAAAGTTAATGGAAATATGCAGTGTTTGAACCCACCAGATGGCCATACTTCAGCGACTCAAGATGAAACTTTAATAGAAACTCCTCGATGGCCATATGAAGAGGAAGAGCTGTTAAGTTATATAGACAATGAAGAGTTACCTGTTATGCTGTTGGACTTGCTGGAATCAGAACACTCCTGTCTCTTTTATTCGGGATGTATCATAGCGCAGATTAGAGATTACAGACAAGCATATCCCAGTTTTCTTTGTGATACACATCATGTACTTTTAAGGCCCACCAACCAGAGCATTATAACTGATGCTATGTGCATCGGAGGTCGATGTGGCTGGTCAGGTGAAGAGCGGAGTGCATTAGAGGCAGTAGAGGCGGCCTTGGTGCACGCGGCCGCGCCCCCCTTGTGCCTCGACCCGCGCCCCGCTGTCGGCTTGCTCGCCGCTCGGCTCCACGCTGCCCCTAGATTATTTAATACGCCTCGAATAAGGAGACAAGCTAAAAAATTCTCACAGGTAGCAGTAAATAGGAAAAGAAAATTAGATCAATTTACACATTACCATGGATTAGAATTATTAGATTTAATACATCGGCAAAGAGCGAAAAGCAGTAGACAATCAGTACCTCACACGCGACTTACATCCAAATATCCTAAGAAACCACCAGAGGTGTTCAAGCCAATAGAGCCTCCAAAGATGGAGCCTTTACCTTTAGCGCTGCCATCAGAACCTAGTAGTCCGCTTCGTCTTGCTCGTGCTTACGAAAGACCTCGGGCGATACCTGACTGCCAACCTCAGCTAGTCGAAGAATATATCCTGGAGACTGAAAAGACATCACCCCATGCAGGCGCTGGGTACTTCCACATAAAACTCTCTATACTACAAAGGCCGTCCGACCAAGAGTTCCTAGGAGAGCTATACGTGGACAGAGACCACGTTGAAGGAGAGAGAAACGGCGCAGCCTGCCGATTTACTTTAGGATCCAGAGTACAAGCGAATAAGTATATACAACAGTTTACGGAGATATTTACGGAAGAAGGTCGAAAATCTGTTAGAATAAAACATATTGTTCCAGGACAGTTACCGAGAGTTTCTTTCACTGGAGGCATGAGAGAATTGCAAAGAAACGCAGCCGCCGCAGCTGCAGCCGCTGCAAACAACGCCACCGTGCAAACGCACACCGCAATTGTTCCGGTCGTAACCACAGCTGCGTCCGCAACTACAAATACTCACAGCAATGCCCGAGCTCTTCCTATACTGCAGGCACAGTTACAGCAAGCTGCCACCGTAAGCGGAGTAGGAAACGTCGTGGCCAGTGTGGGCACGATAGGAAACGTGGGCAGCGTTGGCAGCGTGGGCAACGTTGGCAATGTTGGCGGAGTTGTGACCAACGTGGGCACGGTTAGCGGCGTCGTCGGTAACGTCGTCGGCTCCGTGAACACGAATACAGATACCGCATTAAAACAACAACCATCTCCTACAACGCCCCGTTTGTCACCACAGCAGGCATCAACGAATCAGCTATTAGCGCAACAGCTAACGAACCCCCCTCAGCCGCTCAACACGCCCAAGATGCAGTCAGCAATAATACACATACAGCACCCTCTGATGTCAACGGCGAGCGCTACTCAGGTACAAAATATTCAATACACGAACACATCGACGACACAACAGAAGACGACCGCCGCTAAACCAAGAACAACGAATCCGGCGATAACCGCTCTCGTAACTAGTCTAATGAATTCAGCACAACAGTACTGCAACCAACAAGCGGCAGCCAACCAGAACGCGGCTAAATCAGTTGTGAGCACGGCGAGCAGTAACCCGACGATACTGAACCTACTCAACAGTGCCCCGGCGGCCATGACCCACGTCACGTCCAGCACCGAGAACTCGATAGACGCCCACAAGCTGCTCGGCAGGGTCTCCCTAGCCGGGGCCAGGCTGATAGCCGCCACCACTGCCTCGCACACCATACCTACTTACACTCAGCAGGGAGTCGGCGTTCAAGTAATGAGTGGGTATACCCGGGACAGCGAAGCAATTAACGTGTCGAGTAGTGAAAGCGCGTTATTAGAACGGTTGATAGGATCAGATGCACCCAACGCGTCAGCCTCACAACCTCAACCTGTTTGTCATTTGCAGGGTTTAAGTTTAGCGTCCTTACAAGGCTTACAAGGAATTCAAGGTCTACAGAACGTTCAGGTTCAGATCCCGGGTCTCTCGGCGCCGATATCGTTGTCATTGAACGTGTCCGGGGCACCCAGCGGCCTGCTCGTCTCCGTACCGCCCACCACTTCGGTCGTGCTAACGAATCAACCGTCGGTACTGTCGCTGCCAATCGCTCAGCTAATGCAAGGCGGCGTGAAGAGTGCAGTCCGCGGCGGCACCGTGCAGGTGGTGCGTGCCGCCCGCCCCGCGCCCCGCCCCGCCCACACCCCTGCGCACACGCCCGCGCACACGCCCACGCACACGCCCTCACACACGCCCACGCACACGCCAGCAGGAACCGCTCAGTTCATAACGCAGGCGCAAGCGCAAACATTAACGGCTCAGCAGGTCCGAAGAAAATCGAACGCAGACAGTTCATAG
Protein
MDGLIHAALEAEVILNRAKHVNSNLSQFGSGVTEHKMTWTHDKMHLAESVDDTRMKFQRNSVGSASKATEKFDLFKKLHELHNELSRDESLQANYQGLKTTSYLLEKLLANYNLNTLIINLYPGNKGYSLSLKVNGNMQCLNPPDGHTSATQDETLIETPRWPYEEEELLSYIDNEELPVMLLDLLESEHSCLFYSGCIIAQIRDYRQAYPSFLCDTHHVLLRPTNQSIITDAMCIGGRCGWSGEERSALEAVEAALVHAAAPPLCLDPRPAVGLLAARLHAAPRLFNTPRIRRQAKKFSQVAVNRKRKLDQFTHYHGLELLDLIHRQRAKSSRQSVPHTRLTSKYPKKPPEVFKPIEPPKMEPLPLALPSEPSSPLRLARAYERPRAIPDCQPQLVEEYILETEKTSPHAGAGYFHIKLSILQRPSDQEFLGELYVDRDHVEGERNGAACRFTLGSRVQANKYIQQFTEIFTEEGRKSVRIKHIVPGQLPRVSFTGGMRELQRNAAAAAAAAANNATVQTHTAIVPVVTTAASATTNTHSNARALPILQAQLQQAATVSGVGNVVASVGTIGNVGSVGSVGNVGNVGGVVTNVGTVSGVVGNVVGSVNTNTDTALKQQPSPTTPRLSPQQASTNQLLAQQLTNPPQPLNTPKMQSAIIHIQHPLMSTASATQVQNIQYTNTSTTQQKTTAAKPRTTNPAITALVTSLMNSAQQYCNQQAAANQNAAKSVVSTASSNPTILNLLNSAPAAMTHVTSSTENSIDAHKLLGRVSLAGARLIAATTASHTIPTYTQQGVGVQVMSGYTRDSEAINVSSSESALLERLIGSDAPNASASQPQPVCHLQGLSLASLQGLQGIQGLQNVQVQIPGLSAPISLSLNVSGAPSGLLVSVPPTTSVVLTNQPSVLSLPIAQLMQGGVKSAVRGGTVQVVRAARPAPRPAHTPAHTPAHTPTHTPSHTPTHTPAGTAQFITQAQAQTLTAQQVRRKSNADSS

Summary

Uniprot
NA  
ProteinModelPortal
NA  

Ontologies

KEGG
101746295    K21245 transcription factor SPT20 homolog | (RefSeq) transcription factor SPT20 homolog
PATHWAY
04140    Autophagy - animal - Bombyx mori (domestic silkworm)
GO
GO:0000124   GO:0003712   GO:0006412   GO:0005622   GO:0006418   GO:0004819   GO:0006425   GO:0016876   GO:0043039  

Topology

Length:
992
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.03403
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00016
outside
1  -  992
 
 

Population Genetic Test Statistics

Pi
231.853804
Theta
185.044614
Tajima's D
0.880415
CLR
0.48822
CSRT
0.632868356582171
Interpretation
Uncertain
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