SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO07885
Pre Gene Modal
BGIBMGA000958
Annotation
PREDICTED:_zinc_transporter_9_[Amyelois_transitella]
Location in the cell
PlasmaMembrane   Reliability : 1.556
 

Sequence

CDS
ATGTACGACAAACGAGTCAAAGATGTAAAAACTCAGAAGATCATAAAACAGAGTCCAACTGGAGATATCATTGTTAAAACCGAAACAGGACTAGATAAAGTAATTACAAAAGTGACTATTGAAAAAAGTCAACCACAGCAAACCAAACAGGAGATGGTATCTAAGCCCGTAAAAAAAAGACTCCTAATAGATTTTTCTGCATCATACACTGAGAGAAACTTTATTACTCCCATGAGAGCTATGACTGAATACCTACTGAAACAATCAGACCTCGAGTCCTTACCAAAAGTATTAAGAAGGTCGCCATATGAATCAGAACCTCCAATAACTGTATATTATCGCAGGGATGTTGAAGCAAAAGCAATTGAGATTTGGGGTTCGAAAGAAGCATTGGAAAAAGAGTTGCTTAGAAGAGAATTAGACAGAAGAAGATATGAACAAGATGTTTTTACTGTGAAAAGAAGATTAAGAGATTACAGAAGAGAAATGAGCCATACTCGCTCAAAAGATAATGTGGAAGAAGTAGGATTAAAAACTAGATCAGGACGAGTGGTACTTACAGCTATTGGAATAAATGGATGTAATTTCTTATTTAAGCTTTGTGCCTGGTTTTACACAGGCTCACACAGTCTTTTTTCTGAATGCATCCATTCTCTTGCCGATACTGTGAACCAATTGATATTAGCGTATGGTATTCATAAGTCGGTACAGATGGCAGATCCTGACCATCCATATGGTTATACAAATATGCGATATGTCTCATCACTGATATCTGGTGTTGGTATATTCTGTGTAGGAAGTGGTTTGTCTTTCTATCACGGAGTTACAGGTATTTTGGACCCACAACCATTACATGATTTTTATTGGGCATATTTTGTACTGGGAGGCGCTGTGGTATCAGAAGGTGCCACATTAATGGTAGCATTAAGCGCCATTAGAAAAGGTGCACGAGAAGCAAATATGTCACTTTATGAATATGTAATGCGAAGCTCGGACCCTTCAGTGAATGTAGTTTTATTGGAAGATACGGCAGCTGTAGCTGGCGTGATCGTAGCAGCATCTTGTATGGCTATTTCACAATACACTGGGAATCCATTACCTGATGCCCTAGGCAGCATATTAGTCGGTACCATACTGGGTGGAGTTGCATCTTTTATTATCCTGAGTAATGTCGGTGCTTTAGTTGGCAGGTCTATACCCCACGAGCAATTGGATGAAATTAACAGCGTGTTAGAAAGAGACTTTATGATAAGAGCTATTCATGATGTGAAGGGTATAGATATAGGCAGTAACTTGATAAGATATAAGGCTGAAGTTGATTTTGATGGCAGAGCTCTCACAAGATCGTATTTAGAGAAACACGACTTGAATGCTTTACTAGAGGACATGAAGAAAATCGACACGATCGATGATGTAGAAACTTTTTTACTTAAGCATGGAGAAAATATTGTCGATATGCTTGGAGGCGAAATTGATAGAATAGAGTTAAAGCTGAGGAAAAAGTTTCCACAAATTCGGCACTGTGATTTGGAAATACTCTAA
Protein
MYDKRVKDVKTQKIIKQSPTGDIIVKTETGLDKVITKVTIEKSQPQQTKQEMVSKPVKKRLLIDFSASYTERNFITPMRAMTEYLLKQSDLESLPKVLRRSPYESEPPITVYYRRDVEAKAIEIWGSKEALEKELLRRELDRRRYEQDVFTVKRRLRDYRREMSHTRSKDNVEEVGLKTRSGRVVLTAIGINGCNFLFKLCAWFYTGSHSLFSECIHSLADTVNQLILAYGIHKSVQMADPDHPYGYTNMRYVSSLISGVGIFCVGSGLSFYHGVTGILDPQPLHDFYWAYFVLGGAVVSEGATLMVALSAIRKGAREANMSLYEYVMRSSDPSVNVVLLEDTAAVAGVIVAASCMAISQYTGNPLPDALGSILVGTILGGVASFIILSNVGALVGRSIPHEQLDEINSVLERDFMIRAIHDVKGIDIGSNLIRYKAEVDFDGRALTRSYLEKHDLNALLEDMKKIDTIDDVETFLLKHGENIVDMLGGEIDRIELKLRKKFPQIRHCDLEIL

Summary

EMBL
NWSH01000371    PCG76899.1    ODYU01012731    SOQ59187.1    KZ149978    PZC75863.1    + More
RSAL01000063    RVE49528.1    KQ459299    KPJ01953.1    KQ460205    KPJ16956.1    BABH01000813    BABH01000814    AGBW02008504    OWR53144.1    GEZM01067935    JAV67318.1    NEVH01025657    PNF15084.1    CVRI01000054    CRL00637.1    PNF15083.1    GECZ01009294    JAS60475.1    KB632031    ERL88156.1    KK852631    KDR19826.1    GECU01000132    JAT07575.1    GEBQ01001550    JAT38427.1    ATLV01013369    KE524854    KFB37812.1    UFQT01001659    SSX31333.1    UFQS01001035    UFQT01001035    SSX08655.1    SSX28571.1    DS235053    EEB11034.1    KQ971338    EFA01750.2    APGK01046662    KB741064    ENN74437.1    PYGN01000221    PSN50832.1    GFDL01001214    JAV33831.1    GEZM01067937    JAV67315.1    NNAY01004480    OXU17836.1    APCN01002450    CH477287    EAT44707.1    GEDC01027685    GEDC01014261    GEDC01011167    GEDC01004800    JAS09613.1    JAS23037.1    JAS26131.1    JAS32498.1    GFDL01001211    JAV33834.1    GEDC01007853    JAS29445.1    AXCN02001663    SSX31334.1    AXCM01005758    GGFM01004072    MBW24823.1    GL449209    EFN83131.1    ADMH02001585    ETN61973.1    GGFK01008472    MBW41793.1    GGFJ01003191    MBW52332.1    JXUM01110825    JXUM01110826    JXUM01110827    JXUM01110828    JXUM01110829    JXUM01110830    JXUM01110831    KQ565448    KXJ70959.1    KQ981673    KYN38207.1    ADTU01011059    JXJN01012717    JRES01001654    KNC21122.1    GL444149    EFN61247.1    GL765107    EFZ16860.1    AAAB01008986    EAA00455.3    AJWK01004122    KQ980581    KYN15435.1    GL888932    EGI57333.1    GL732626    EFX70024.1    GBXI01007459    GBXI01003736    JAD06833.1    JAD10556.1    GDHF01021919    GDHF01006282    JAI30395.1    JAI46032.1    LBMM01005665    KMQ91311.1    GFDF01009576    JAV04508.1    GAMC01006532    JAC00024.1    KQ414638    KOC66899.1    QOIP01000004    RLU23218.1    GAMC01006533    GAMC01006531    JAC00023.1    KZ288192    PBC34271.1    KK107453    EZA50619.1    CCAG010005008    KQ435850    KOX70938.1    KQ977661    KYN00667.1    GDIP01179486    JAJ43916.1    GDIP01228127    JAI95274.1    GDIP01146186    JAJ77216.1    GDIP01146184    JAJ77218.1    GDIQ01056950    JAN37787.1    GDIP01136227    LRGB01002843    JAL67487.1    KZS06165.1    GDIQ01211702    GDIQ01086456    GDIQ01066214    JAN28523.1    GDIP01191280    JAJ32122.1    GDIQ01175511    JAK76214.1    GDIP01233620    JAI89781.1    GDIP01061590    JAM42125.1    GDIP01251568    JAI71833.1    GDIP01110291    JAL93423.1   
Pfam
PF01545   Cation_efflux        + More
PF00884   Sulfatase
PF15383   TMEM237
Interpro
IPR037129   XPA_sf        + More
IPR002524   Cation_efflux       
IPR009061   DNA-bd_dom_put_sf       
IPR040177   SLC30A9       
IPR027469   Cation_efflux_TMD_sf       
IPR024607   Sulfatase_CS       
IPR000917   Sulfatase_N       
IPR017850   Alkaline_phosphatase_core_sf       
IPR029409   TMEM237       
SUPFAM
SSF161111   SSF161111        + More
SSF46955   SSF46955       
SSF53649   SSF53649       
Gene 3D
PDB
2ENK     E-value=1.34749e-15,     Score=204

Ontologies

Topology

Length:
513
Number of predicted TMHs:
4
Exp number of AAs in TMHs:
99.3101800000001
Exp number, first 60 AAs:
0
Total prob of N-in:
0.94787
inside
1  -  251
TMhelix
252  -  274
outside
275  -  288
TMhelix
289  -  311
inside
312  -  335
TMhelix
336  -  358
outside
359  -  372
TMhelix
373  -  395
inside
396  -  513
 
 

Population Genetic Test Statistics

Pi
199.187162
Theta
215.109105
Tajima's D
0.154879
CLR
0.000089
CSRT
0.410129493525324
Interpretation
Uncertain
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