SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO07871  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA000950
Annotation
PREDICTED:_THO_complex_subunit_2_isoform_X1_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 4.64
 

Sequence

CDS
ATGTCTTGCACGGAGGCGGAGGCGGCGCGGTACGGCACGTTCCTCTGCAAGGTGCTGACGACCGCCATGCGCTGGCACGCCGACAAGGACGCCTTCCACCGAGAGTGCGCGCACTACCCCGGCTTCGTCACCAAGTACCGCGTCTCCAAGCAGTTCACTGAAGCTAATGATCATGTCGGATATGAAAACTACAGGCACGTGTGCCACAAATGGCATTATAAAATAACCAAAGCAATGGTTGTTTGCTTGGATTCAGGCGACTACGTGCAAATACGTAACGCCCTCATAGTTCTAATAAGAGTCTTACCTCATTTTCCTGTTCTGGCTAAGCTAAGTCAAATTATCGAAAAGAAAATTGATAAGGTTAAGGAACAAGAGAAAATACAAAGACAAGATCTTTATGTGTTAGCAACGGTCTACAGTGGACAGCTACGGAACAAGTCCTCGAATATGATGAATGAAGCTGATTTCCATCAGATGAGCGACAAGCACAAAGCGGCGAGCACCGCGGCCGCCAGCGCTGCGCCCGCCAAAGAAGAAGTGGTCGCAGATCCTGAACCCGCCCCTGCACCCGCGCCCCCACCACAAGAAAGTGAAAAACGGGACTCGCGCAATAGCGACCGCCGCCGAGACGAAGCGGACCGAGATAAAGATTCCAAAAGAGAATCAAAAACCTCCACAAAGGAAAGGTCTAAAGAAGAAACCCGAATTAAAGATAGATCACCCAAAGAACGTTTACAGAGGGAAAGCAATTATTTAGAAGCAATCTCACCGCCACACGAACATCGCAGCACTTCAGATGATGTCGAACGAGATATAAAGCGACGTAAAGTTGAAAACAGCAGTAACGGCAAGGCTAGCAAAGAATTAGAAGAGCGATCTCCTGAAAAGGAAAAAAGGAAGACTAAAGTTAGAGGTGATGAACGCAAAGAGCGTAAGATGAACCGCAAGAGGGACAGAGCTGAGGAATCTACAATTTTAGAACAAAAGAGACGCCGAGACGAACAAAAAGGAGCAATCAAGATGAGCGGTCATCAGAATGGTTCTCAAGAAGATCACCATTACGACAAATACAAAAGGGAGAAATCACCATTCCGTGACCGTTCCCACGAAGAAGCCAGAGATAAACAATATCCTTTTCAAAGAACAAAATAA
Protein
MSCTEAEAARYGTFLCKVLTTAMRWHADKDAFHRECAHYPGFVTKYRVSKQFTEANDHVGYENYRHVCHKWHYKITKAMVVCLDSGDYVQIRNALIVLIRVLPHFPVLAKLSQIIEKKIDKVKEQEKIQRQDLYVLATVYSGQLRNKSSNMMNEADFHQMSDKHKAASTAAASAAPAKEEVVADPEPAPAPAPPPQESEKRDSRNSDRRRDEADRDKDSKRESKTSTKERSKEETRIKDRSPKERLQRESNYLEAISPPHEHRSTSDDVERDIKRRKVENSSNGKASKELEERSPEKEKRKTKVRGDERKERKMNRKRDRAEESTILEQKRRRDEQKGAIKMSGHQNGSQEDHHYDKYKREKSPFRDRSHEEARDKQYPFQRTK

Summary

Pfam
PF16134   THOC2_N        + More
PF11732   Thoc2
PF11262   Tho2
Interpro
IPR032302   THOC2_N        + More
IPR021726   THO_THOC2_N       
IPR040007   Tho2       
IPR021418   THO_THOC2_C       

Ontologies

Topology

Length:
384
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.083
Exp number, first 60 AAs:
0.0157
Total prob of N-in:
0.04113
outside
1  -  384
 
 

Population Genetic Test Statistics

Pi
211.407082
Theta
191.64335
Tajima's D
0.143723
CLR
0.081014
CSRT
0.401729913504325
Interpretation
Uncertain
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