SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO07870  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA000950
Annotation
PREDICTED:_THO_complex_subunit_2_isoform_X1_[Bombyx_mori]
Location in the cell
Cytoplasmic   Reliability : 2.02 Nuclear   Reliability : 1.504
 

Sequence

CDS
ATGTCTGGATTTTCTCAAAGTGTCTATGATTTTCTTCTTTGTGGCCTGAAAGGAAACCTTAAAAAAGATACCGTTTTATCCTTCTTAAGAGAAATAACTAATTTGCATGCAGATGTGCCATCAATAATATTGGATATCATATCAATTTTGGATGCTGAAACCAGCCTAGATGTACAAAGCGATGAGCGGGCTTATTTCTGCTACATTGTGAGAGAGCTGGAGCCATTTATTTCTGATAAGTTACTAAAAGAAAGATTAGAGATAGATACATTACAAGATGCTGGTACTCTTAAGAACAAAAACTTCTACACCAAATTCATAAAGATCAAGACTAAATTATACTACAAACAACGTAAATTTAACTTATTTCGAGAAGAAAGTGAAGGATACTCAAAGTTAATAGTTGAATTAAACCAAGAAATAAATGAAGATACAGAATGGAAAAATTTGCTTGAAATAATTCAATCTCTTATTGGTTGTTTTAATTTGGATCCAAACAGGGTACTTGACATAATTCTAGAATCGTTTGAAGCCCGACCACAATTAGATGCTCTTTTTATACCGCTTATTAAGAGTTACATGGCAGATCCTCATGTAATTTCTGAGGTTTTAGGTTTCAAACTGAGTAATATGGAAATTCTTGATAACTATACAGAACCTCCACCGTTGATGACTGTAATTGCATTGCTTTTACAACATCAGGTTATATCATTAGATGACATCTATCCATGGCTTCGCCCAGATGATGTGATAATAGCTAAACAAGCTGATAAAGAAATAAAAGCAGTTCAAGAATATATAAGAAAAATTAACATTGTGTCTACCAAAGGACCACAAACAAATGCCCCCACTGAATTTATAGAAGATAAAGCTGATCCGCAGGAATATTGGAGCAATCAAAAGCTAGTGTTATGTGAAACTTTATTGAGAGTCAATGCGTGGCGAGAGTTTGCCTCACTGTTTGCGCGTCTTCCCACTACTACGATGCCGCCAAGACCAGCAATAGCCCTTTGTGGGTTGCTGCATGCTGTTGTAGAACCATTGTATCGAAAGCAATGCCGAGTAGCTTCAAAAATACTCGGAAAACCAGTACCTCCACTTAAATCAAATTTAGCACCACCTAATTGTAAAACATTCGAAGACATGAAAGAAACAGTTATACCAGCCCTTATATTGCTTGGTCCAGCCCTTCATCATGACCCTGTCTTGATGTACAAAGTCATTAGAATACTTAGAACTGCTCGCGGTCAAAAAGATGATCCGTTACATTTTGAGGCACTAACCGTTTTGGATACCGCAATATTACCGGCTCTTACACTGATGGAAGGGAATTGTTGTATGGCTGAAGAGGTGTACACATTACTTAAGTTATATCCATATCAGTGCAGATACTGTCTCTATGCGCGTTGGAAAAATGAGGCTGGCGAACGAATACCTGCTCTCATTCGTGTCCGGGGGAACTCATTGCAGAAAATAAAACACATAATGAAACGAGTATCCAAAGAGAATATCAAGCCCCAAGGTCGTCTCATCGGGAAACTGTCGCACGCCGCCCCGGCCTTTCTGTTTGATTACGTGCTCTTGCAGATACAAACATACGACAATCTGATAGGACCAGTAGTAGAATCCATGAAATATTTGACGTCTCTATCTTTAGATGTTCTGGGATACTGTTTAGTTGAGGCTTTAGGCTCTCGACGTTCGACGCCACCTGCGTGGCTACAAGCACTAGCCTCGTTCGCCGGGGCAGCCTTCAAGAAACACAATATTGAGTTAACTGCTCTTTTGCAGTTTGTTGCTAATCGACTCAAAGCTCAACAGAGTCAAGACCTGATAGTATTAAAAGAAATAGTACAAAAAATGGCCGGTATAGAAGCTGCTGAGGAAATGACACCCGAGCAGTTAGAGGCTATGGCAGGAGGTGAACTACTTAAAGGAGAGGCTGGTTACTTTTCACAAGTGCGTAACACGAGACGCTCTTCTGCGCGACTGAAAGATGCCATAGTCGGAAACAACTTAGACATATCTCTTTGTATATTGGCGGCGCAACAGAGACATTGTTGTGTTTGGAAAGAATACGAAGATGACATTCAAATAAGTGGCGAACCTCCAGGGTCCCAGCTAAAGGTGGTGGGTAGATTGGCAGACCAATGTCAGGATGCTCTGGTTCAGCTTGGTACATTCTTAGCATCGTCACATGCTCCCGATGAATATGCGGCGAGGCTGCCATCGTTACAGGAACTGCTGCGTGATTACCATGTAGATGCAGATGTCGCATTCTTTTTGCATCGTCCAGTTATAAACCAAAAGATATCCGCCAAGTTGGAATCTTTACGTAAAGCATCGGACAGCAAATCGGATTCAATAGAGAAGATTATAGAAAGATACAATGTGGCATCAAAGGAAGCCTTGGAGCCTATTGTATCGTCGATACAACCGATGCTGCCTGCGAGGGTTTTAGAAGACATTTCGCCTGAGTTTTACGTTACATTCTGGTCATTATCCATGTACGATCTTCGAGTGCCGGTCGAAAGTTACGAGAGGGAAATAGAACGCTTAAAAACAGCAGCAGCTAACGTCAGCAAGGATTCGTCTCAAGGAACCAAAGTTAAGAAAGAACAGGAACGTTTCAATACGCTCATCGAAAAACTACAGGAGGAGCGGCGCCGACAGGCCGCGCACGTGGCGGCGGTGCGGGCGCGGCTGGCGCGCGAGTGCGAGGACTGGTTCCCGGCGCGGGCGGTCCGCTCCGCCAAGAACGAGACCGTGACGCGGCTCATGCAGCTGTGCATATTCCCGCGCTGCGTGTTCACGGCGGCCGATGCCCTCTACTGCGCCGAGTTCGTGCATACCGTGCACTCTCTGAAGACTCCCAATTTCTCCACTCTTCTGTGTTATGATAGACTAAATGAATTTATAAATTTGAATTTGAAATTCTTAACCAAAGAGGAGATATTACAGATCAAAGTGATCAATACGAAAAAACGATAA
Protein
MSGFSQSVYDFLLCGLKGNLKKDTVLSFLREITNLHADVPSIILDIISILDAETSLDVQSDERAYFCYIVRELEPFISDKLLKERLEIDTLQDAGTLKNKNFYTKFIKIKTKLYYKQRKFNLFREESEGYSKLIVELNQEINEDTEWKNLLEIIQSLIGCFNLDPNRVLDIILESFEARPQLDALFIPLIKSYMADPHVISEVLGFKLSNMEILDNYTEPPPLMTVIALLLQHQVISLDDIYPWLRPDDVIIAKQADKEIKAVQEYIRKINIVSTKGPQTNAPTEFIEDKADPQEYWSNQKLVLCETLLRVNAWREFASLFARLPTTTMPPRPAIALCGLLHAVVEPLYRKQCRVASKILGKPVPPLKSNLAPPNCKTFEDMKETVIPALILLGPALHHDPVLMYKVIRILRTARGQKDDPLHFEALTVLDTAILPALTLMEGNCCMAEEVYTLLKLYPYQCRYCLYARWKNEAGERIPALIRVRGNSLQKIKHIMKRVSKENIKPQGRLIGKLSHAAPAFLFDYVLLQIQTYDNLIGPVVESMKYLTSLSLDVLGYCLVEALGSRRSTPPAWLQALASFAGAAFKKHNIELTALLQFVANRLKAQQSQDLIVLKEIVQKMAGIEAAEEMTPEQLEAMAGGELLKGEAGYFSQVRNTRRSSARLKDAIVGNNLDISLCILAAQQRHCCVWKEYEDDIQISGEPPGSQLKVVGRLADQCQDALVQLGTFLASSHAPDEYAARLPSLQELLRDYHVDADVAFFLHRPVINQKISAKLESLRKASDSKSDSIEKIIERYNVASKEALEPIVSSIQPMLPARVLEDISPEFYVTFWSLSMYDLRVPVESYEREIERLKTAAANVSKDSSQGTKVKKEQERFNTLIEKLQEERRRQAAHVAAVRARLARECEDWFPARAVRSAKNETVTRLMQLCIFPRCVFTAADALYCAEFVHTVHSLKTPNFSTLLCYDRLNEFINLNLKFLTKEEILQIKVINTKKR

Summary

EMBL
BABH01000840    BABH01000841    AGBW02010374    OWR48624.1    KQ459299    KPJ01971.1    + More
NWSH01000673    PCG74893.1    PCG74892.1    ODYU01013259    SOQ59964.1    GAIX01004729    JAA87831.1    KK852866    KDR14733.1    NEVH01011878    PNF31425.1    PNF31427.1    KQ760498    OAD60086.1    GL450772    EFN80499.1    GL440413    EFN65937.1    KK107119    EZA58739.1    QOIP01000009    RLU18825.1    KQ414618    KOC67992.1    KQ982068    KYQ60556.1    KQ976491    KYM83306.1    KQ978379    KYM94496.1    KZ288361    PBC26997.1    KQ434781    KZC04463.1    KQ978646    KYN29434.1    CH477225    EAT47141.1    EAT47142.1    DS233478    EDS30156.1    GANO01002319    JAB57552.1    JXUM01012233    KQ560349    KXJ82903.1    ATLV01020364    KE525299    KFB45190.1    AXCN02000817    AXCM01006213    APCN01002453    AAAB01008964    GFDL01010943    JAV24102.1    GFDL01010990    JAV24055.1    EAA12368.4    ADMH02000146    ETN67613.1    KQ971338    EFA01592.2    GGFK01001940    MBW35261.1    GGFK01002024    MBW35345.1    GGFK01002837    MBW36158.1    GGFJ01000312    MBW49453.1    GGFJ01000317    MBW49458.1    GDHF01030870    JAI21444.1    KQ435798    KOX73449.1    GDHF01029457    GDHF01025770    GDHF01020633    GDHF01019694    JAI22857.1    JAI26544.1    JAI31681.1    JAI32620.1    GAMC01015591    JAB90964.1    GDHF01020765    JAI31549.1    GEZM01019409    JAV89647.1    GBXI01014414    JAC99877.1    JRES01000842    KNC27807.1    JXJN01023964    CCAG010009523    CVRI01000010    CRK88716.1    DS235078    EEB11443.1    CRK88717.1    UFQS01000045    UFQT01000045    SSW98418.1    SSX18804.1    GAMC01015588    JAB90967.1    GDHF01029422    GDHF01027328    GDHF01025816    JAI22892.1    JAI24986.1    JAI26498.1    GDHF01025581    JAI26733.1    GEDC01030829    JAS06469.1    GGFM01001332    MBW22083.1    GDHF01033858    JAI18456.1    KB632081    ERL88596.1    GDIP01157117    JAJ66285.1    GDIP01060232    JAM43483.1    GDIP01111275    JAL92439.1    GDIP01125522    JAL78192.1    GDIP01163717    JAJ59685.1    GDIP01171560    JAJ51842.1    GDIP01035935    JAM67780.1    GDIQ01029049    JAN65688.1    GDIP01038384    JAM65331.1    GDIP01160513    JAJ62889.1    GDIP01165912    JAJ57490.1    GDIQ01079777    JAN14960.1    GDIP01165213    JAJ58189.1    GDIP01083233    JAM20482.1    GEDC01028396    JAS08902.1    GDIQ01145714    GDIQ01143911    JAL06012.1    GDIP01155667    JAJ67735.1    GDIP01234762    JAI88639.1   
Pfam
PF11262   Tho2        + More
PF11732   Thoc2
PF16134   THOC2_N
Interpro
IPR021418   THO_THOC2_C        + More
IPR021726   THO_THOC2_N       
IPR032302   THOC2_N       
IPR040007   Tho2       
IPR003307   W2_domain       

Ontologies

Topology

Length:
996
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.01762
Exp number, first 60 AAs:
0.00064
Total prob of N-in:
0.00012
outside
1  -  996
 
 

Population Genetic Test Statistics

Pi
222.84313
Theta
210.443813
Tajima's D
0.152898
CLR
0.069664
CSRT
0.405879706014699
Interpretation
Uncertain
Copyright@ 2018-2023    Any Comments and suggestions mail to:zhuzl@cqu.edu.cn   渝ICP备19006517号

渝公网安备 50010602502065号