Gene

KWMTBOMO07869  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA001195

Annotation

28S_ribosomal_protein_S6_precursor_[Danaus_plexippus]

Location

Bomo_Chr13(-):8866608-8867879      View in EpiBrowser

Full name

Probable 28S ribosomal protein S6, mitochondrial      

Location in the cell

Cytoplasmic   Reliability : 1.245 Mitochondrial   Reliability : 1.703 Nuclear   Reliability : 1.327

CDS

ATGCCGACATATGAACTTGCTTTATTGTTACGAAACATGCCGAAACCTGAATTAAAAACTTCATTGAAGAGGATCTCACATGCTATATTCGATTGCGGAGGAATCATCAGAAACATAGAAAATTTAGGATTTCGACCAATGCCTTACAAGTCCACTGCACATGGTATGACCCACAAAGAAGCCAACTATTTTATCTTTAAGATAGATACACCCACCAAAGCAGTTATAGACTTGAAAGAGGAATACAAAAGAGACGTTGACATAGTGCGACAAAGATTTTTCAAAGTCAAAGAAGAAGAAAGAAAAGCTTGTACTTTAGAGGAGGAACTTCTGCCTCCTGCATATCGTGAAGATGTTCAAAAAATGATACAGATCGGTAAAACACAAGTGAATAGATTTACATATAAGTTTAAATATAATTCTGGTTTAGATTACTATCCTTTCCAAAAGTGA

Protein

MPTYELALLLRNMPKPELKTSLKRISHAIFDCGGIIRNIENLGFRPMPYKSTAHGMTHKEANYFIFKIDTPTKAVIDLKEEYKRDVDIVRQRFFKVKEEERKACTLEEELLPPAYREDVQKMIQIGKTQVNRFTYKFKYNSGLDYYPFQK

Subunit

Component of the mitochondrial ribosome small subunit (28S) which comprises a 12S rRNA and about 30 distinct proteins.

Similarity

Belongs to the bacterial ribosomal protein bS6 family.

Keywords

Complete proteome   Mitochondrion   Reference proteome   Ribonucleoprotein   Ribosomal protein  

Feature

chain  Probable 28S ribosomal protein S6, mitochondrial

Uniprot

H9IVB5   A0A212F4H2   Q95UN1   A0A0L7LLK9   A0A2A4JS81   A0A194Q8X2   + More
A0A194RHM2   A0A1E1VXY3   A0A182LCH0   A0A182XE24   A0A182THC8   W5J822   A0A182K7B1   A0A182VND4   A0A182HJ98   A0A182QVZ0   Q5TTH4   A0A182N5B0   A0A182J1W5   T1DQQ4   A0A2M3ZA38   A0A2M4C2C8   A0A2M4C2C7   A0A182XUW8   A0A182RIW5   Q17DX4   A0A1Q3G3L8   A0A182PE43   A0A2M4AN56   A0A182LXY8   A0A182VRH9   B4L8V0   B4IXJ7   A0A067QTY5   R4FPJ3   B4LCX9   W8BXX3   A0A0K8TN53   A0A0L0BTE8   A0A0M5JB44   A0A1I8Q6M6   A0A2P8XDK2   A0A1L8EH11   A0A1L8EHE2   A0A1B6BXI6   M9NDH8   B4QQK6   Q9VZD5   B4PHU6   A0A034WPK7   A0A0K8W0Q5   A0A1I8M839   Q29ED6   B4H1V7   A0A1W4VPJ0   A0A3B0JV79   A0A0V0GDD4   B3NC28   B4HU53   A0A336LMT1   B4N476   F4W823   A0A023F800   A0A182GZN8   A0A084WSL3   B0WJH8   A0A2M4ANT4   A0A1A9ZG30   A0A195D7P8   A0A158NDS0   U5EXB1   A0A1A9UTS2   A0A232EZF9   A0A0A9XSY9   B3M918   D7EHR0   A0A1Y1LUW3   A0A1L8DSG1   A0A1W4WY34   A0A1L8DSA9   A0A1B6FHB8   E2B8D3   A0A1J1IET7   A0A026WH66   N6T0H6   A0A0P5E2Y7   A0A3L8DYG4   K7ISL5   A0A0P6HIN9   E9FRZ0   A0A154PG66   A0A1B6K5W8   A0A1B0F010   A0A146KV43   A0A1B6D552   A0A0P6ANY7   A0A1B6L4I5   A0A1D2NLR0   J9JJJ1   A0A2H8TKV6  

Pubmed

19121390    22118469    26227816    26354079    20966253    20920257    + More
23761445    12364791    14747013    17210077    25244985    17510324    17994087    24845553    24495485    26369729    26108605    29403074    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    22936249    12537569    17550304    25348373    25315136    15632085    21719571    25474469    26483478    24438588    21347285    28648823    25401762    18362917    19820115    28004739    20798317    24508170    23537049    30249741    20075255    21292972    26823975    27289101   

EMBL

BABH01000841    AGBW02010374    OWR48623.1    AY046536    AAL03955.1    JTDY01000621    + More
KOB76443.1    NWSH01000673    PCG74895.1    KQ459299    KPJ01972.1    KQ460205    KPJ16939.1    GDQN01011451    JAT79603.1    ADMH02002074    ETN59543.1    APCN01002134    AXCN02000148    AAAB01008879    EAL40731.2    GAMD01002324    JAA99266.1    GGFM01004589    MBW25340.1    GGFJ01010336    MBW59477.1    GGFJ01010335    MBW59476.1    CH477290    EAT44627.1    GFDL01000651    JAV34394.1    GGFK01008866    MBW42187.1    AXCM01004215    CH933816    EDW17125.1    CH916366    EDV96434.1    KK852942    KDR13501.1    ACPB03003548    GAHY01000849    JAA76661.1    CH940647    EDW68840.1    GAMC01012459    GAMC01012456    JAB94099.1    GDAI01001819    JAI15784.1    JRES01001494    KNC22484.1    CP012525    ALC44044.1    PYGN01002715    PSN30062.1    GFDG01000787    JAV18012.1    GFDG01000786    JAV18013.1    GEDC01031534    JAS05764.1    AE014296    AFH04294.1    CM000363    CM002912    EDX09212.1    KMY97586.1    AY070674    CM000159    EDW93405.1    GAKP01001421    JAC57531.1    GDHF01007640    JAI44674.1    CH379070    EAL30125.1    CH479203    EDW30309.1    OUUW01000002    SPP77619.1    GECL01000781    JAP05343.1    CH954178    EDV50916.1    CH480817    EDW50474.1    UFQT01000071    SSX19392.1    CH964095    EDW78950.1    GL887888    EGI69693.1    GBBI01001344    JAC17368.1    JXUM01099928    KQ564529    KXJ72125.1    ATLV01026615    KE525415    KFB53207.1    DS231960    EDS29174.1    GGFK01009114    MBW42435.1    KQ981153    KYN08888.1    ADTU01012852    GANO01001038    JAB58833.1    NNAY01001464    OXU23886.1    GBHO01021661    JAG21943.1    CH902618    EDV38962.1    KQ973114    EFA12135.2    GEZM01047926    JAV76688.1    GFDF01004743    JAV09341.1    GFDF01004742    JAV09342.1    GECZ01020157    JAS49612.1    GL446312    EFN88032.1    CVRI01000048    CRK98773.1    KK107207    EZA55375.1    APGK01049576    KB741156    KB632169    ENN73559.1    ERL89475.1    GDIP01153591    GDIP01108014    GDIP01074421    GDIP01070622    GDIP01043099    LRGB01002082    JAJ69811.1    KZS09253.1    QOIP01000002    RLU25332.1    GDIQ01019442    JAN75295.1    GL732523    EFX89934.1    KQ434899    KZC10822.1    GECU01000867    JAT06840.1    AJVK01036080    GDHC01018268    JAQ00361.1    GEDC01016491    JAS20807.1    GDIP01032364    JAM71351.1    GEBQ01021573    JAT18404.1    LJIJ01000010    ODN06149.1    ABLF02034766    GFXV01002969    MBW14774.1   

Proteomes

UP000005204    UP000007151    UP000037510    UP000218220    UP000053268    UP000053240    + More
UP000075882    UP000076407    UP000075902    UP000000673    UP000075881    UP000075903    UP000075840    UP000075886    UP000007062    UP000075884    UP000075880    UP000076408    UP000075900    UP000008820    UP000075885    UP000075883    UP000075920    UP000009192    UP000001070    UP000027135    UP000015103    UP000008792    UP000037069    UP000092553    UP000095300    UP000245037    UP000000803    UP000000304    UP000002282    UP000095301    UP000001819    UP000008744    UP000192221    UP000268350    UP000008711    UP000001292    UP000007798    UP000007755    UP000069940    UP000249989    UP000030765    UP000002320    UP000092445    UP000078492    UP000005205    UP000078200    UP000215335    UP000007801    UP000007266    UP000192223    UP000008237    UP000183832    UP000053097    UP000019118    UP000030742    UP000076858    UP000279307    UP000002358    UP000000305    UP000076502    UP000092462    UP000094527    UP000007819   

PRIDE

H9IVB5    M9NDH8    Q9VZD5   

Pfam

PF01250   Ribosomal_S6

Interpro

IPR035980   Ribosomal_S6_sf        + More
IPR014717   Transl_elong_EF1B/ribosomal_S6       
IPR000529   Ribosomal_S6       
IPR020814   Ribosomal_S6_plastid/chlpt       

SUPFAM

SSF54995   SSF54995       

Gene 3D

3.30.70.60    

ProteinModelPortal

H9IVB5   A0A212F4H2   Q95UN1   A0A0L7LLK9   A0A2A4JS81   A0A194Q8X2   + More
A0A194RHM2   A0A1E1VXY3   A0A182LCH0   A0A182XE24   A0A182THC8   W5J822   A0A182K7B1   A0A182VND4   A0A182HJ98   A0A182QVZ0   Q5TTH4   A0A182N5B0   A0A182J1W5   T1DQQ4   A0A2M3ZA38   A0A2M4C2C8   A0A2M4C2C7   A0A182XUW8   A0A182RIW5   Q17DX4   A0A1Q3G3L8   A0A182PE43   A0A2M4AN56   A0A182LXY8   A0A182VRH9   B4L8V0   B4IXJ7   A0A067QTY5   R4FPJ3   B4LCX9   W8BXX3   A0A0K8TN53   A0A0L0BTE8   A0A0M5JB44   A0A1I8Q6M6   A0A2P8XDK2   A0A1L8EH11   A0A1L8EHE2   A0A1B6BXI6   M9NDH8   B4QQK6   Q9VZD5   B4PHU6   A0A034WPK7   A0A0K8W0Q5   A0A1I8M839   Q29ED6   B4H1V7   A0A1W4VPJ0   A0A3B0JV79   A0A0V0GDD4   B3NC28   B4HU53   A0A336LMT1   B4N476   F4W823   A0A023F800   A0A182GZN8   A0A084WSL3   B0WJH8   A0A2M4ANT4   A0A1A9ZG30   A0A195D7P8   A0A158NDS0   U5EXB1   A0A1A9UTS2   A0A232EZF9   A0A0A9XSY9   B3M918   D7EHR0   A0A1Y1LUW3   A0A1L8DSG1   A0A1W4WY34   A0A1L8DSA9   A0A1B6FHB8   E2B8D3   A0A1J1IET7   A0A026WH66   N6T0H6   A0A0P5E2Y7   A0A3L8DYG4   K7ISL5   A0A0P6HIN9   E9FRZ0   A0A154PG66   A0A1B6K5W8   A0A1B0F010   A0A146KV43   A0A1B6D552   A0A0P6ANY7   A0A1B6L4I5   A0A1D2NLR0   J9JJJ1   A0A2H8TKV6  

PDB

6NU3     E-value=9.94937e-18,     Score=215

KEGG

101740286    K02990 small subunit ribosomal protein S6 | (RefSeq) probable 28S ribosomal protein S6, mitochondria

PATHWAY

03010    Ribosome - Bombyx mori (domestic silkworm)

GO

GO:0003735   GO:0019843   GO:0006412   GO:0005840   GO:0005763   GO:0070181   GO:0032543   GO:0016021   GO:0030145   GO:0050906   GO:0005515   GO:0016818   GO:0003707   GO:0051537  

PANTHER

PTHR21011  

Subcellular location

Mitochondrion  

Length:

150

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00188

Exp number, first 60 AAs:

0.00188

Total prob of N-in:

0.02018

outside

1  -  150

 

 

Pi

212.450502

Theta

209.015661

Tajima's D

0.009212

CLR

7.177105

CSRT

0.377531123443828

Interpretation

Uncertain