Gene

KWMTBOMO07866  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA001197

Annotation

PREDICTED:_translation_initiation_factor_eIF-2B_subunit_epsilon_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr13(-):8845850-8852939      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.154

CDS

ATGGATAAAGAAAATATCGTACAAGCTGTTGTTATTATGGACACTTTTAACAGTAATTTTTCTCCATTAACAGACAATAAACCAATGGGTTTTCTTGAAGTTGCAGGCGTGCCTCTAATAGATTATGTTCTAGAATCTCTTGCTTTGGGCGGAGTGGGAGAGGCAATTCTGTTTTGTTGTCAAAATGGACAAAAAATAAAAGAACATGTACAGAAACATCAAGATAACAAGTCTCTGTGGAGTCTTACTATGGATATCCAGATTTTGATGTCAGATACTTGTCAGACCATGGGTGATGTGATGAGAGAGTTAGATGCTGCTGCTTTGCTGAAAGGATATTTTGTGCTAGCTGGTATCAATAGCATTACTAATATGAATTTTGCAAGTCTTCTGGAACAACATAAACAAACATGTAAAAAAGACAAAGGGACAGCGATGACTTTGGTTTATAAGAAACTTTCTTGGGAACACCCATTGATAAGCTCAGACAGGTCAACTTTTTTGGCCGCTAACGAGAATACAAAGAAAGTGTTAGTGCACAAGAGATATAGACCTAAGTCCAAGGAGAAGATAATATCTCTTCCTTTGGATTTGGTATTAAATAATTCTGAAGTTAAATTACATCACAATCTGGTTGATACTAACATTGCACTCTGCTCACCAACAGTCCCACCATTGTTCTCGGATAATTTTGATTTTCAAACTAGGGATGACTTCATTCATGGCATATTAATTAATGAGGAAATTCTTGCCAGCTCATTATATTATACATTATTGAAATCAAATCAATATGCTGCTGCTATAACAAATTGGAAAACTTATCAAACAGTTTGTAGAGACATATTACATAAGTGGGTGTATCCACTGTCAATTGAATCGGGTTTGTATTCCCGTGACAAGTATACTCTTACGGGAAATCTTAATTTTGTTGAAAACTCAGCTATGTTGAGCAGATCATGTGTATTAACCGAAAATACATTAATTGGAGCGAAAACGCAAGTACAAGACAACACCACGGTGACAAAATCAATTATCGGAAAGAAATGTACAATTGGAAATAATGTCATAATCAATGGATCACACATAATGAATAATGTAATAATAAAGGACAACTGTAGAATTTCAAACAGTTTTATTGATGACAATTGTGTTATTAGTGAAGGATCAAATCTACATGCTGGCACAATAATTGCAGAAAATGTCAAAGTGGAATCAGGAAGTGATCTCAAAGGCAGAATAGAATGTTCTATTGACAATGATAAAAAACTACAAAAATCAGAATCAAGTGGAACAGAATGGGAAGAGTCATCTGGGAGTAGTGATGAGGAGTTTATTGGTTTTGATAAAGTATGGAGTGACAGTGAATCTTGTTATTCTTCAATCAGTTCAGCAGATTCTTCATTACCTGACTCTCCTGTACCTGATGATACTAAAATGTTCTTGCAAGAAGTCATAGACAGCTTAGCAAGAGGCTATGATGAAAAATTGAAATGCGATTACCTTATATTAGAAATAAATTCATCAAGATATGCCTACAACATTCAGTTAAATGAAGTCAATTTTTTCGTTGTCCGAGCATTACTTAGTATGCCTGTTTTGTCTGAAGCTAAGAATGTGCTCACAACTGTAAAAGATATATTGAAATATTTCCGGCCTGTATTAGCAAACTACATCAAGTCAAAATCTTCTATAATGGATTGCTTACGAGCTGTTGAGGACACCTGTTTAAATTGTGAATGGCTAGATGGAAAATCTGGACAAATTTTACACTTATTATATGAAGCTGATGTAGTAGATGAAGATTCTTTGGTGGATTGGTATGCTGAATTAAAGGAAAATGCAAATCCTTTTGTCAAACAGCCTTCACTTGTAAAATTTTTTGAATGGCTTCAAGAAGCAAGTGAAGAAAGTGATGATTCTGAATAA

Protein

MDKENIVQAVVIMDTFNSNFSPLTDNKPMGFLEVAGVPLIDYVLESLALGGVGEAILFCCQNGQKIKEHVQKHQDNKSLWSLTMDIQILMSDTCQTMGDVMRELDAAALLKGYFVLAGINSITNMNFASLLEQHKQTCKKDKGTAMTLVYKKLSWEHPLISSDRSTFLAANENTKKVLVHKRYRPKSKEKIISLPLDLVLNNSEVKLHHNLVDTNIALCSPTVPPLFSDNFDFQTRDDFIHGILINEEILASSLYYTLLKSNQYAAAITNWKTYQTVCRDILHKWVYPLSIESGLYSRDKYTLTGNLNFVENSAMLSRSCVLTENTLIGAKTQVQDNTTVTKSIIGKKCTIGNNVIINGSHIMNNVIIKDNCRISNSFIDDNCVISEGSNLHAGTIIAENVKVESGSDLKGRIECSIDNDKKLQKSESSGTEWEESSGSSDEEFIGFDKVWSDSESCYSSISSADSSLPDSPVPDDTKMFLQEVIDSLARGYDEKLKCDYLILEINSSRYAYNIQLNEVNFFVVRALLSMPVLSEAKNVLTTVKDILKYFRPVLANYIKSKSSIMDCLRAVEDTCLNCEWLDGKSGQILHLLYEADVVDEDSLVDWYAELKENANPFVKQPSLVKFFEWLQEASEESDDSE

Uniprot

A0A3S2NQK7   A0A2H1X3L9   S4PY36   A0A212F4G7   A0A194RLS5   A0A194QAF2   + More
A0A182GFR0   A0A182GWM4   A0A2J7QH87   A0A2R7VZV2   W8AZT4   A0A1Y1NJA6   D2A208   A0A2H8TWI6   A0A131XUG5   J9JNJ7   E9ID55   E1ZZ86   A0A195EP16   A0A195FMG8   A0A195BV38   A0A158NEH5   A0A2A3EI72   A0A154P5S8   A0A151XJ55   A0A2J7QH89   A0A023GD56   E2BLR8   A0A2B4SSI0   A0A3M6U553   A0A0K8W8X4  

Pubmed

23622113    22118469    26354079    26483478    24495485    28004739    + More
18362917    19820115    21282665    20798317    21347285    30382153   

EMBL

RSAL01000144    RVE45980.1    ODYU01013242    SOQ59940.1    GAIX01003973    JAA88587.1    + More
AGBW02010374    OWR48620.1    KQ460205    KPJ16936.1    KQ459299    KPJ01975.1    JXUM01062662    KQ562210    KXJ76401.1    JXUM01093640    KQ564070    KXJ72840.1    NEVH01013984    PNF27948.1    KK854182    PTY12718.1    GAMC01016182    JAB90373.1    GEZM01001289    JAV97984.1    KQ971338    EFA02717.1    GFXV01005723    MBW17528.1    GEFM01006500    JAP69296.1    ABLF02039910    GL762454    EFZ21344.1    GL435311    EFN73501.1    KQ978625    KYN29642.1    KQ981490    KYN41144.1    KQ976401    KYM92447.1    ADTU01013343    KZ288254    PBC30876.1    KQ434822    KZC07203.1    KQ982080    KYQ60371.1    PNF27946.1    GBBM01003614    JAC31804.1    GL449036    EFN83402.1    LSMT01000027    PFX32059.1    RCHS01002248    RMX48578.1    GDHF01005029    JAI47285.1   

Proteomes

UP000283053    UP000007151    UP000053240    UP000053268    UP000069940    UP000249989    + More
UP000235965    UP000007266    UP000007819    UP000000311    UP000078492    UP000078541    UP000078540    UP000005205    UP000242457    UP000076502    UP000075809    UP000008237    UP000225706    UP000275408   

Pfam

PF14602   Hexapep_2        + More
PF02020   W2
PF00132   Hexapep
PF00483   NTP_transferase

Interpro

IPR035543   eIF-2B_epsilon_N        + More
IPR003307   W2_domain       
IPR016021   MIF4-like_sf       
IPR029044   Nucleotide-diphossugar_trans       
IPR011004   Trimer_LpxA-like_sf       
IPR001451   Hexapep       
IPR016024   ARM-type_fold       
IPR018357   Hexapep_transf_CS       
IPR005835   NTP_transferase_dom       

SUPFAM

SSF51161   SSF51161        + More
SSF48371   SSF48371       
SSF53448   SSF53448       

Gene 3D

1.25.40.180     3.90.550.10    

CDD

cd04197  eIF-2B_epsilon_N

ProteinModelPortal

A0A3S2NQK7   A0A2H1X3L9   S4PY36   A0A212F4G7   A0A194RLS5   A0A194QAF2   + More
A0A182GFR0   A0A182GWM4   A0A2J7QH87   A0A2R7VZV2   W8AZT4   A0A1Y1NJA6   D2A208   A0A2H8TWI6   A0A131XUG5   J9JNJ7   E9ID55   E1ZZ86   A0A195EP16   A0A195FMG8   A0A195BV38   A0A158NEH5   A0A2A3EI72   A0A154P5S8   A0A151XJ55   A0A2J7QH89   A0A023GD56   E2BLR8   A0A2B4SSI0   A0A3M6U553   A0A0K8W8X4  

PDB

6JLZ     E-value=2.86414e-64,     Score=624

KEGG

101740544    K03240 translation initiation factor eIF-2B subunit epsilon | (RefSeq) translation initiation factor

PATHWAY

03013    RNA transport - Bombyx mori (domestic silkworm)

GO

GO:0003743   GO:0016740   GO:0016779   GO:0031369   GO:0005085   GO:0005851   GO:0005515   GO:0005488   GO:0031145   GO:0005506   GO:0030145   GO:0050906   GO:0016818   GO:0003707   GO:0051537  

Length:

641

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.48441

Exp number, first 60 AAs:

0.28685

Total prob of N-in:

0.05399

outside

1  -  641

 

 

Pi

198.495322

Theta

178.670971

Tajima's D

0.577493

CLR

0.18389

CSRT

0.539773011349433

Interpretation

Uncertain