Gene

KWMTBOMO07861  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA001202

Annotation

muscle_LIM_protein_[Papilio_xuthus]

Location

Bomo_Chr13(-):8728664-8730537      View in EpiBrowser

Full name

Transgelin      

Location in the cell

Nuclear   Reliability : 2.231

CDS

ATGCCTTTCAAACCCGCTGATAACCCGAAGTGCCCGAAATGTGGCAAATCAGTTTACGCCGCTGAGGAGCGCGTGGCTGGTGGCCTCAAATGGCACAAAATGTGCTTCAAATGTGGTCTGTGCCAAAAATTGCTGGACTCAACCAACTGCTCAGAGCACGAGGGTGAACTGTACTGCAAAGTGTGCCATGCACGCAAATTCGGACCCAAAGGCTACGGCTTTGGTGGCGGCGCTGGTTGCCTCTCTATGGACACCGGCGACCACTTGAAGGGCGAGAATGCGAATTGA

Protein

MPFKPADNPKCPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCKVCHARKFGPKGYGFGGGAGCLSMDTGDHLKGENAN

Similarity

Belongs to the calponin family.

Uniprot

I4DQX7   I4DKP7   Q6SA71   A0A194RHX6   S4PBT2   A0A194QET9   + More
Q2F677   H9IVC2   Q5MGJ0   A0A2H1VWS7   A0A212F4G6   A0A3S2LWQ2   A0A2A4JD65   A0A2A4JDS3   A0A2A4JCA1   A0A1W4X7Z7   Q1W2B8   A0A1B6KMD0   A0A1W4WYK7   A0A0A9XJ87   A0A1B6KLC4   A0A170ZG77   T1HF17   A0A1B6DDC4   A0A1B6LCY9   A0A1B6KC49   V9ID34   A0A0A9XDT1   A0A2A3E5F8   A0A0L7LSV5   A0A146M7K3   A0A1W4X9F0   A0A1W4WYN3   A0A1W4X992   A0A1B6FUU7   A0A3B3Z7F8   E0VVT8   Q9U412   A0A0A9XNN3   D6MKQ6   D2A179   A0A0A9XYI7   E2AA40   A0A0C9QJ18   E2BLA2   A0A154NYM3   A0A026WCA1   Q6B0K6   A0A2A3E6T3   A0A088ASZ7   A0A1S4FEV9   T1IZY8   A0A224XMA9   A0A2C9PGG1   A0A0M9A0L5   A0A2J7R383   V5GMQ4   A0A1Y1LJJ9   W5J4L0   A0A0J7L4I7   A0A182PBS7   A0A195BBU3   A0A195FIF5   A0A195D4R3   F4WDV8   A0A182KSM0   A0A158P2G7   A0A182VFR9   A0A182TGE3   A0A182XNC3   Q7Q080   A0A182HQ44   D3TQC9   T1E3A9   A0A182Y1R7   A0A182R5D0   A0A182QVS0   A0A151WTU2   A0A182MYL2   Q174L3   A0A1S4FES9   A0A139WJM7   A0A3Q0IQ10   A0A023EU78   A0A182JST7   A0A336MX29   A0A1Q3FMK9   A0A1Q3FME8   A0A1Q3FMN0   A0A1Q3FMC7   A0A1B0CXE8   A0A182W946   V5G5M6   T1E7C1   B4MQQ9   B0WNJ7   A0A182FU57   A0A1B0EXR1   A0A164WXI1   A0A1J1J744  

Pubmed

22651552    15604781    26354079    23622113    19121390    16023793    + More
22118469    25401762    26227816    26823975    25463417    20566863    11812047    20406677    18362917    19820115    20798317    24508170    30249741    17510324    28004739    20920257    23761445    21719571    20966253    21347285    12364791    14747013    17210077    20353571    24330624    25244985    24945155    17994087   

EMBL

AK404828    BAM20317.1    AK401865    BAM18487.1    AY461436    AAR23823.1    + More
KQ460205    KPJ16930.1    GAIX01002699    JAA89861.1    KQ459299    KPJ01981.1    DQ311195    ABD36140.1    BABH01000848    AY829796    AAV91410.1    ODYU01004907    SOQ45263.1    AGBW02010374    OWR48613.1    RSAL01000144    RVE45986.1    NWSH01001911    PCG69706.1    PCG69704.1    PCG69705.1    DQ445509    ABD98747.1    GEBQ01027396    JAT12581.1    GBHO01038115    GBHO01038114    GBHO01024716    GBHO01004444    JAG05489.1    JAG05490.1    JAG18888.1    JAG39160.1    GEBQ01027742    JAT12235.1    GEMB01002236    JAS00944.1    ACPB03015476    GEDC01013620    JAS23678.1    GEBQ01018415    JAT21562.1    GEBQ01030948    JAT09029.1    JR040237    AEY59043.1    GBHO01038116    GBHO01024722    JAG05488.1    JAG18882.1    KZ288361    PBC26993.1    JTDY01000155    KOB78553.1    GDHC01007542    GDHC01002895    JAQ11087.1    JAQ15734.1    GECZ01026975    GECZ01015868    JAS42794.1    JAS53901.1    DS235814    EEB17494.1    AF206698    AAF23406.1    GBHO01024719    GBHO01021257    JAG18885.1    JAG22347.1    GQ166159    ADG58103.1    KQ971338    EFA01575.2    GBHO01021254    GBHO01004445    JAG22350.1    JAG39159.1    GL438029    EFN69678.1    GBYB01003544    JAG73311.1    GL449001    EFN83539.1    KQ434776    KZC04118.1    KK107321    QOIP01000002    EZA52664.1    RLU25899.1    AY703482    AAT91723.1    PBC26992.1    JH431728    GFTR01006694    JAW09732.1    KY224376    ATL75739.1    KQ435798    KOX73453.1    NEVH01007822    PNF35284.1    GALX01003087    JAB65379.1    GEZM01054104    JAV73844.1    ADMH02002215    ETN57754.1    LBMM01000802    KMQ97458.1    KQ976530    KYM81687.1    KQ981523    KYN40178.1    KQ976885    KYN07419.1    GL888096    EGI67590.1    ADTU01007356    ADTU01007357    ADTU01007358    ADTU01007359    AAAB01008986    EAA00361.4    APCN01003291    EZ423631    EZ423636    EZ423640    ADD19907.1    ADD19916.1    GALA01000009    JAA94843.1    AXCN02001041    KQ982753    KYQ51258.1    CH477409    EAT41490.1    KYB28122.1    GAPW01001629    JAC11969.1    UFQT01002525    UFQT01002536    SSX33628.1    SSX33639.1    GFDL01006195    JAV28850.1    GFDL01006318    JAV28727.1    GFDL01006277    JAV28768.1    GFDL01006314    JAV28731.1    AJWK01033657    AJWK01033658    GALX01003086    JAB65380.1    GAMD01003177    JAA98413.1    CH963849    EDW74448.1    DS232012    EDS31824.1    AJVK01014994    LRGB01001036    KZS13671.1    CVRI01000074    CRL08219.1   

Proteomes

UP000053240    UP000053268    UP000005204    UP000007151    UP000283053    UP000218220    + More
UP000192223    UP000015103    UP000242457    UP000037510    UP000261520    UP000009046    UP000007266    UP000000311    UP000008237    UP000076502    UP000053097    UP000279307    UP000005203    UP000053105    UP000235965    UP000000673    UP000036403    UP000075885    UP000078540    UP000078541    UP000078542    UP000007755    UP000075882    UP000005205    UP000075903    UP000075902    UP000076407    UP000007062    UP000075840    UP000076408    UP000075900    UP000075886    UP000075809    UP000075884    UP000008820    UP000079169    UP000075881    UP000092461    UP000075920    UP000007798    UP000002320    UP000069272    UP000092462    UP000076858    UP000183832   

PRIDE

Q6SA71    Q2F677    H9IVC2    A0A088ASZ7   

Pfam

PF00412   LIM        + More
PF00402   Calponin
PF00307   CH

Interpro

IPR001781   Znf_LIM        + More
IPR000557   Calponin_repeat       
IPR036872   CH_dom_sf       
IPR001715   CH-domain       
IPR003096   SM22_calponin       

SUPFAM

SSF47576   SSF47576       

Gene 3D

1.10.418.10    

CDD

cd00014  CH

ProteinModelPortal

I4DQX7   I4DKP7   Q6SA71   A0A194RHX6   S4PBT2   A0A194QET9   + More
Q2F677   H9IVC2   Q5MGJ0   A0A2H1VWS7   A0A212F4G6   A0A3S2LWQ2   A0A2A4JD65   A0A2A4JDS3   A0A2A4JCA1   A0A1W4X7Z7   Q1W2B8   A0A1B6KMD0   A0A1W4WYK7   A0A0A9XJ87   A0A1B6KLC4   A0A170ZG77   T1HF17   A0A1B6DDC4   A0A1B6LCY9   A0A1B6KC49   V9ID34   A0A0A9XDT1   A0A2A3E5F8   A0A0L7LSV5   A0A146M7K3   A0A1W4X9F0   A0A1W4WYN3   A0A1W4X992   A0A1B6FUU7   A0A3B3Z7F8   E0VVT8   Q9U412   A0A0A9XNN3   D6MKQ6   D2A179   A0A0A9XYI7   E2AA40   A0A0C9QJ18   E2BLA2   A0A154NYM3   A0A026WCA1   Q6B0K6   A0A2A3E6T3   A0A088ASZ7   A0A1S4FEV9   T1IZY8   A0A224XMA9   A0A2C9PGG1   A0A0M9A0L5   A0A2J7R383   V5GMQ4   A0A1Y1LJJ9   W5J4L0   A0A0J7L4I7   A0A182PBS7   A0A195BBU3   A0A195FIF5   A0A195D4R3   F4WDV8   A0A182KSM0   A0A158P2G7   A0A182VFR9   A0A182TGE3   A0A182XNC3   Q7Q080   A0A182HQ44   D3TQC9   T1E3A9   A0A182Y1R7   A0A182R5D0   A0A182QVS0   A0A151WTU2   A0A182MYL2   Q174L3   A0A1S4FES9   A0A139WJM7   A0A3Q0IQ10   A0A023EU78   A0A182JST7   A0A336MX29   A0A1Q3FMK9   A0A1Q3FME8   A0A1Q3FMN0   A0A1Q3FMC7   A0A1B0CXE8   A0A182W946   V5G5M6   T1E7C1   B4MQQ9   B0WNJ7   A0A182FU57   A0A1B0EXR1   A0A164WXI1   A0A1J1J744  

PDB

2O13     E-value=2.37039e-13,     Score=176

KEGG

692826    K09377 cysteine and glycine-rich protein | (RefSeq) muscle LIM protein

GO

GO:0046872   GO:0042805   GO:0060537   GO:0005634   GO:0005737   GO:0030018   GO:0045214   GO:0008307   GO:0030036   GO:0008270   GO:0016192   GO:0051082   GO:0005506   GO:0030145   GO:0050906   GO:0005515   GO:0016818   GO:0003707   GO:0051537  

Length:

95

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00666

Exp number, first 60 AAs:

0

Total prob of N-in:

0.15763

outside

1  -  95

 

 

Pi

242.287347

Theta

218.945775

Tajima's D

0.335684

CLR

0.019104

CSRT

0.465676716164192

Interpretation

Uncertain