Silkworm Genome Informatics Database

Gene

KWMTBOMO07860

Pre Gene Modal

BGIBMGA000946

Annotation

nucleotide_excision_repair_protein_[Bombyx_mori]

Location

Bomo_Chr13(+):8705378-8715160 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.557

CDS

ATGCCGGTAACAAGAAAGAAGGTTATAAAAACAGTGTACAAACATGAAGATAGTGATGAAGAAACCGGTGATTTTAGTGACTCAGGGTCAGAAGCGCACATTTCTGATGTGCCAAGCTCTGAAGATGAAGCTGAGGAATTACCAGAAACGTCTGAAGATGAATTTGTCACAAAAACCAAAAAGAACGCCACGAAACCTAAACCATCGAAGAAACCGTTCGCCAAAAGATTAATTAGCAAAATAAATAAACAATCTCTCGAAATGGAAAATACATCTCCAACGATCTTCACAGTTAAAGACCTTACAGATGAAGATAAACTTCTTCCACCCATACTCAATTTATCTGAAAGTGATAGTAATGATGAAGAAACTCCAAAGGTAGCTGTGAAAAAATTCACACCTCCAATAGCTGATGTCAGAGAACAAACCACTGACAGTGATGAAGGCTCTCAAATGAATTACAAAGATGTTTGGTCACAAAATGTTGATCAGAGTGAGGAAATAGCAAAGAAGGCCTTCATGGAGCTTGAACAACACAAAAATAAAATAGAAGAGGTGAAAGAATCAATACAAAACTACAAAGATATTAAGGAAGAAAAAATATCTGATGTAAAAGATCTTTTAGCACTTGGCGAAGAGGCTGCTCCACCTACAGAAGATACTGTAAAAAAGAAAACTAAACCGAGAAGAGTCAAAGATGAGAGTGATTCTGAAATTGAAGACTGGGAAGAGGTCACAGAAGTGAAAACTGCCTCACAACAAGGTATACAACTTATTGTGAAATTTCCTGAGGCTGGCTGTAAGAAAAAGAAAGCCATTGATGTGGAGATGATGATGAAAAGAAAAATTAATAGAACAAGAAAAGAAAATCAGATTTATATGCATAAAGTTCATGTACTCTGCTGGTTAGGTTACGGTAATTATGTCAGTCGCGTTATAAACGATCAAGATGTTATGGCTGTAGCCCTTTCTTTGGTACCATCAAAAGAATGTTATCCTAAGGACAGAGTTGATATGAAGTATATAGAACAAATCACAAAATGGTTTCGTGAGAAGTTGAACTTAAAACAAGATAAAAATGAAGATAAATTCAAACCTAAAGCCCCTCCACTAAAAACACTTGTACTAGAACAAATCAACAGAAGAACTGTAACAACAAAGAAGTTTTTTGTTTTTGTATTTGTTGCTTTATTGCGAGCTCTCGGCCTACAGTGCCGTATCATGATGAATTTTGTTACACTGCCTCTAAAACCATCGACATTCGAATTATATTCACTTTCAACAAAAGCAAAAGACAATAAAAATGAAAAATCCAAATCGGAAGTTGTTGAAGAAAAACAACAGAAACACAAAGAAGATAGCGAAAAAAAATCTAATTCTAAAAAACCATCAAAACCGAAAATTCCGCAAGTGGATGGAAATGACGATGATGAAAATATATTTCAAAACATAATGCAAGTTGATGGTAATGATGACATCCTTGGCGTCAAAACCAGAAGTACGAGATCTGCAAGAGCTGGTAATGTCAATTCTCTTAAAAATAAAGAAGAAACTGAAGATGATTTACCTCAAAAACGATTAAAAAAAGACCCTGAACAGTCTACACAAAATCCTTCCCGAGGTGATAGAAAGCAGACTAATAGATCATTAAAAGGTGTAAACAGTAAACATGGAAACCCTACAAACGTTTTGATTGATGAAAATAATGATAATATTGCAATGAAAAGATCTACAAAGCTGTTACCAAATCGAGCAATTAAATCAATCATCAGTGACAAATCAGATGGTAAAGAAAAAGACAAAACACCAAAAGAAAATGCTTCTTCAAAACCACAAAGCTGCAAAATTGTACCTAAACTTGAATTAGAAATTACAAAAAAGACTCTAGCGAATGCAAAACCAGCCAAAAGAAAAGCAATAAAAGATATTCCCCTTGTGTCTGATGAAAACAAAAAGTCAGTTTCCAGCAAATATTTTCAAACTAACACAGCTACTGTTGACGAAAAGAAAAGCAGGACTTGTAGGAAAAGATCGCACACCTTTGAATCTAATAAAACGAATAAAAATAACAGTTTGGATGTTAAGGAGAAGGTCACTAAAGCAAGGACGAAAAGTGCAATTAATGAAGTAGAAAAAAGCAAATACTTTTGTGATACAGAAATAGAAAGTAAACGATCTAAAGTAACCAGACATACAAGGTCAAACAATGTTCAGGTCAAACCTGAGCAAAGAGTAAGTCATAGAGATCTAAAGAAAATAAGTGATAAATCTAAAAATGATGTCACTGAGGACCTTGTGACAATAATAAAAAGCAGAATAAAAGAAGCTAAGAGTGACTCAAATAAGTTGAGATCAAAAGCAAAAAAAATAAAAGAAGAATCAGATAGTGACAGTGACCTATTACCAGAAGAGGAAGTTCGCAAAAATATACCAGAAAGTGATGATGATTTCAAACCACCTAAAATTAGTCCTCGACCCAGTACAAGTAAGAAAATAGATCGTCGTGTACTTTCCTCAGATGATGAAAAACCTAAAAACAAAATCGACATTTGGTGTGAGATTTTTGCTGAAGAACTTGAACAATGGATATGTGTTGATGTTGTTAGTGGAAAAATACATGACACAGATACAATTTATACTCGTGCTACGCACCCGGTGTGCTATATTGTTGGCTGGGACAACAACAATTATTTGAAAGACTTGACTAGAAAATACGTGCCTCACTATAATACGGTGACGCGAAAATTACGAGCCGAACTGGATTGGTGGGAAAAAGCTCTAAGCCCGTGGGTTGGACCTAAGACTGCACGGGACAAAGAAGAAGATGAATATATAAATAAGATGCAACTTGAAGCACCTTTGCCGAAAAGTATTGCCGAGTACAAGAATCATCCTCTGTATGCTCTAAAAAGACACTTATTGAAGTTCGAAGCTATGTATCCATCAGACGCGGCAACATTAGGATTCGTACGCGGCGAAGCGGTATACTCCAGGGACTGCGTGTACGTATGTAGATCACGAGATCTGTGGCTTAAAGAGGCCAAAGTTGTCAAACTTGGTGAAAAACCTTACAAAATTGTGAAAGCGCGGCCGAAATGGGATAAGTTATCAAATACATTAATCAGAGATAAAGTTCTGGAATTGTATGGACCATGGCAGGTTCAAGACTATGAACCACCTGTAGCTGAAAATGGAATAGTGCCTCGGAATGCTTATGGAAATGTAGAACTGTTCAAGGAATGCATGTTACCTAAAGGAACAGTGCGAATTAAATTACCTGGTTTAAATAGAGTGGCAAGAAAATTGAACATAGACTGTGCACCAGCGATGACCGGCTTCGACTACGACGGTGGCTGGTGTCATCCTGTTTACGACGGCTTTGTTGTTTGTAAAGAGTTTGAGGGAGTGCTCACAGAAGCCTGGGTCCAGGAACAAGAAGAACAGGAAAAACGTGAACGCGAAAAAACCGAAGCCAGAGTCTATGGAAATTGGAAGAAGTTAATCAGAGGTTTGCTCATACGAGAAAGGGTCAAAGATAAATATGGTTTCGAAAAACTCAGTGCGTCCCAACCAACAAAAGTGTTATATCATTCATAA

Protein

MPVTRKKVIKTVYKHEDSDEETGDFSDSGSEAHISDVPSSEDEAEELPETSEDEFVTKTKKNATKPKPSKKPFAKRLISKINKQSLEMENTSPTIFTVKDLTDEDKLLPPILNLSESDSNDEETPKVAVKKFTPPIADVREQTTDSDEGSQMNYKDVWSQNVDQSEEIAKKAFMELEQHKNKIEEVKESIQNYKDIKEEKISDVKDLLALGEEAAPPTEDTVKKKTKPRRVKDESDSEIEDWEEVTEVKTASQQGIQLIVKFPEAGCKKKKAIDVEMMMKRKINRTRKENQIYMHKVHVLCWLGYGNYVSRVINDQDVMAVALSLVPSKECYPKDRVDMKYIEQITKWFREKLNLKQDKNEDKFKPKAPPLKTLVLEQINRRTVTTKKFFVFVFVALLRALGLQCRIMMNFVTLPLKPSTFELYSLSTKAKDNKNEKSKSEVVEEKQQKHKEDSEKKSNSKKPSKPKIPQVDGNDDDENIFQNIMQVDGNDDILGVKTRSTRSARAGNVNSLKNKEETEDDLPQKRLKKDPEQSTQNPSRGDRKQTNRSLKGVNSKHGNPTNVLIDENNDNIAMKRSTKLLPNRAIKSIISDKSDGKEKDKTPKENASSKPQSCKIVPKLELEITKKTLANAKPAKRKAIKDIPLVSDENKKSVSSKYFQTNTATVDEKKSRTCRKRSHTFESNKTNKNNSLDVKEKVTKARTKSAINEVEKSKYFCDTEIESKRSKVTRHTRSNNVQVKPEQRVSHRDLKKISDKSKNDVTEDLVTIIKSRIKEAKSDSNKLRSKAKKIKEESDSDSDLLPEEEVRKNIPESDDDFKPPKISPRPSTSKKIDRRVLSSDDEKPKNKIDIWCEIFAEELEQWICVDVVSGKIHDTDTIYTRATHPVCYIVGWDNNNYLKDLTRKYVPHYNTVTRKLRAELDWWEKALSPWVGPKTARDKEEDEYINKMQLEAPLPKSIAEYKNHPLYALKRHLLKFEAMYPSDAATLGFVRGEAVYSRDCVYVCRSRDLWLKEAKVVKLGEKPYKIVKARPKWDKLSNTLIRDKVLELYGPWQVQDYEPPVAENGIVPRNAYGNVELFKECMLPKGTVRIKLPGLNRVARKLNIDCAPAMTGFDYDGGWCHPVYDGFVVCKEFEGVLTEAWVQEQEEQEKREREKTEARVYGNWKKLIRGLLIRERVKDKYGFEKLSASQPTKVLYHS

Uniprot

A0A2A4JDF4 A0A2H1VYG6 A0A3S2LG55 A0A212F4G2

Pubmed

22118469

EMBL

NWSH01001911 PCG69708.1 ODYU01004907 SOQ45264.1 RSAL01000144 RVE45987.1 + More
AGBW02010374 OWR48612.1

Proteomes

UP000218220 UP000283053 UP000007151

Pfam

PF03835   Rad4        + More
PF10403   BHD_1
PF10405   BHD_3

Interpro

IPR018326   Rad4_beta-hairpin_dom1        + More
IPR018328   Rad4_beta-hairpin_dom3
IPR004583   DNA_repair_Rad4
IPR018325   Rad4/PNGase_transGLS-fold
IPR036985   Transglutaminase-like_sf
IPR018327   BHD_2
IPR038765   Papain-like_cys_pep_sf

SUPFAM

SSF54001 SSF54001

Gene 3D

3.90.260.10

ProteinModelPortal

A0A2A4JDF4 A0A2H1VYG6 A0A3S2LG55 A0A212F4G2

PDB

6CFI E-value=1.03551e-20, Score=251

KEGG

100462719 K10838 xeroderma pigmentosum group C-complementing protein | (RefSeq) Rad4; nucleotide excision repa

PATHWAY

03420 Nucleotide excision repair - Bombyx mori (domestic silkworm)

GO

GO:0006289 GO:0003684 GO:0005634 GO:0003677 GO:0016192 GO:0051082 GO:0005506 GO:0030145 GO:0050906 GO:0005515 GO:0016818 GO:0003707 GO:0051537

PANTHER

PTHR12135

Length:

1198

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

12.13517

Exp number, first 60 AAs:

0

Total prob of N-in:

0.56517

outside

1 - 1198

Pi

232.529539

Theta

194.502082

Tajima's D

0.766728

CLR

0.434385

CSRT

0.591820408979551

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics