Gene

KWMTBOMO07859

Pre Gene Modal

BGIBMGA001204

Annotation

PREDICTED:_LIM_domain_only_protein_3-like_[Amyelois_transitella]

Location

Bomo_Chr13(-):8616888-8669977      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 1.812 Nuclear   Reliability : 1.865

CDS

ATGATTCGAGACCCACCTGCCATGCATAAACCCGACAATACAAACGGTCAACAAGATGAAAATAAGTACAGTCTGAGTAACAACGTGGCGAGCTCTACGGGAGGAGCGAGGCTTTGCGCGCAATGCGGGAAGGTCATCACTGAGAGATTCCTCCTCAAAGCGATGGAAAGATTCTGGCATGAAGATTGTTTGAAGTGCGGGTGCTGCGATTGCCGCCTCGGGGAAGTCGGCTCCAAATTATATTACAAGGCAGACCTGATGCTGTGCAAAAGGGATTATCTTAGGCTATTCGGTGCCACCGGCAATTGTGTGGCGTGCAATAAAGTTATTCCAGCCTTCGAAATGGTGATGCGAGCAAAGAGTTTCGTCTACCATTTAGAATGTTTCGCATGTCAACAGTGTAATCACAGATTCTGCGTAGGTGACAGATTCTACCTTTGCGACAATAAAATACTCTGCGAATATGACTATGAAGAGAGGCTGGTGTTTGCAAGTATGGCGGCTAATCCCAGTGGACTGGCGCACATCAGGCGACAATCTCCAAGTGGGGGTTACATTGGTAGTGTGAGCGGCTGTGGCAGTAGTGCAGCAGCAGGAAACGCTCTTGTCGATAAGGACGGAGGTGGATGCGCAGGCGCAGATGACGCATCCAGTGGCTACGGTAGCCCACCAGACCCTGACGTGTGTGATGCCGCACGATGA

Protein

MIRDPPAMHKPDNTNGQQDENKYSLSNNVASSTGGARLCAQCGKVITERFLLKAMERFWHEDCLKCGCCDCRLGEVGSKLYYKADLMLCKRDYLRLFGATGNCVACNKVIPAFEMVMRAKSFVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERLVFASMAANPSGLAHIRRQSPSGGYIGSVSGCGSSAAAGNALVDKDGGGCAGADDASSGYGSPPDPDVCDAAR

Uniprot

A0A2A4JC17   A0A3S2PAJ3   H9IVC4   A0A194QAG2   A0A2H1VHJ4   A0A194RH71   + More
A0A212F5Q2   A0A182KCL7   A0A182VCL1   Q7QDS3   A0A182FLY8   A0A1S4H3V2   Q0IEY7   A0A182XFN1   A0A182HX51   A0A1S4FHB8   A0A1Y1L7R8   D2A171   A0A1B6ETR0   A0A1W4WYL6   A0A1B6L1G7   A0A1W4X9G1   A0A336LFF3   A0A2S2NAN5   A0A2H8TUE1   J9JRI3   A0A2S2NKA5   A0A2S2QIU1   A0A1S4EGE4   A0A1S3D7G0   A0A212FA18   D2A3G5   A0A194R4G4   A0A1B6IFH1   E0VXP9  

Pubmed

19121390    26354079    22118469    12364791    17510324    28004739    + More
18362917    19820115    20566863   

EMBL

NWSH01001929    PCG69637.1    RSAL01000144    RVE45988.1    BABH01000860    KQ459299    + More
KPJ01985.1    ODYU01002593    SOQ40295.1    KQ460205    KPJ16927.1    AGBW02010158    OWR49054.1    AAAB01008849    EAA07238.4    CH477461    EAT40553.1    APCN01005137    GEZM01068169    JAV67117.1    KQ971338    EFA01580.2    GECZ01028452    GECZ01003118    JAS41317.1    JAS66651.1    GEBQ01022434    JAT17543.1    UFQS01003266    UFQT01003266    SSX15433.1    SSX34802.1    GGMR01001655    MBY14274.1    GFXV01006060    MBW17865.1    ABLF02038502    GGMR01004733    MBY17352.1    GGMS01008466    MBY77669.1    AGBW02009529    OWR50574.1    EFA01915.2    KQ460761    KPJ12562.1    GECU01022049    GECU01013357    JAS85657.1    JAS94349.1    DS235833    EEB18155.1   

Proteomes

UP000218220    UP000283053    UP000005204    UP000053268    UP000053240    UP000007151    + More
UP000075881    UP000075903    UP000007062    UP000069272    UP000008820    UP000076407    UP000075840    UP000007266    UP000192223    UP000007819    UP000079169    UP000009046   

PRIDE

H9IVC4   

Pfam

PF00412   LIM

Interpro

IPR001781   Znf_LIM       

ProteinModelPortal

A0A2A4JC17   A0A3S2PAJ3   H9IVC4   A0A194QAG2   A0A2H1VHJ4   A0A194RH71   + More
A0A212F5Q2   A0A182KCL7   A0A182VCL1   Q7QDS3   A0A182FLY8   A0A1S4H3V2   Q0IEY7   A0A182XFN1   A0A182HX51   A0A1S4FHB8   A0A1Y1L7R8   D2A171   A0A1B6ETR0   A0A1W4WYL6   A0A1B6L1G7   A0A1W4X9G1   A0A336LFF3   A0A2S2NAN5   A0A2H8TUE1   J9JRI3   A0A2S2NKA5   A0A2S2QIU1   A0A1S4EGE4   A0A1S3D7G0   A0A212FA18   D2A3G5   A0A194R4G4   A0A1B6IFH1   E0VXP9  

PDB

4KFZ     E-value=1.33098e-34,     Score=363

KEGG

101740925    no KO assigned | (RefSeq) LIM domain only protein 3-like

GO

GO:0046872   GO:0008270   GO:0016192   GO:0051082   GO:0005506   GO:0030145   GO:0050906   GO:0005515   GO:0016818   GO:0003707   GO:0051537  

Length:

233

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.44718

Exp number, first 60 AAs:

0.0004

Total prob of N-in:

0.09243

outside

1  -  233

 

 

Pi

213.832651

Theta

180.905434

Tajima's D

0.345602

CLR

0.461642

CSRT

0.466976651167442

Interpretation

Uncertain