Gene

KWMTBOMO07857  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA000944

Annotation

heat_shock_protein_hsp21.4_[Bombyx_mori]

Location

Bomo_Chr13(+):8519268-8525983      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.068

CDS

ATGGCTGACAGTGGTCTCAAGAGAAATATCCCCATCAAGCTTGGCGATTTTTCGGTTATCGATACAGAATTCTCAAGCATCAGAGAGCGCTTCGATGCCGAAATGAGGAAGATGGAAGAAGAAATGAGCAAATTCAGATCAGAACTCATGAACAGAGAAAGCAACAATTTCTTCAAGAGCACAACTAGCACGACGACATCTTCACAGCACAGTGACAGCAGACAGCTTGCTGAGCCCAGTCACTGGGATAGCTTAAACTCGCCGCTCATTCAAGACGAGGGTGACGGCAAGACTCTCAAGCTTCGCTTTGATGTCAGCCAGTATACTCCCGAAGAGATCGTTGTTAAGACTGTCGACAACAAATTACTGGTCCATGCCAAACACGAGGAGAAATCTGATACGAAATCTGTGTACAGAGAATACAACAGGGAGTTTTTGTTGCCCAAGGGAACAAATCCTGAGGCCATTAAGTCTTCGCTGTCCCGGGACGGTGTGCTTACCGTGGAAGCGCCATTGCCACAACTCGCCATCACGGACAGGAACATTCCTATCCAGAAGCACTGA

Protein

MADSGLKRNIPIKLGDFSVIDTEFSSIRERFDAEMRKMEEEMSKFRSELMNRESNNFFKSTTSTTTSSQHSDSRQLAEPSHWDSLNSPLIQDEGDGKTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYNREFLLPKGTNPEAIKSSLSRDGVLTVEAPLPQLAITDRNIPIQKH

Similarity

Belongs to the small heat shock protein (HSP20) family.

Uniprot

Q5R1P5   R4IT81   A0A2A4JL13   I4DM98   A0A194RHX1   A0A2H1V2G5   + More
I4DIN9   E2F396   A0A3G1T1A3   A0A0E3JC68   A0A0L7L4C4   A7KCX9   S4PX64   A0A212FNE3   A0A0K0XQX2   A0A194Q8Y7   L7SVB9   A0A0A7RI59   R9S074   A0A2H4LHL9   A0A222NUL7   A0A0B5L3T3   A0A0A7BZM5   A0A2H4G3L3   A0A2A3EMQ1   V9ICI5   A0A097PHN7   K7ITW5   A0A3L8E4H7   K7ITW4   K7ITW3   C1K660   A0A0V0G5V3   A0A023FAM7   A0A069DQC2   A0A097PHP1   A0A0P4VVM9   T1HWW7   V9IAP4   A0A386GVZ1   R4WI21   A0A026WNY2   A0A2H8TUD8   J9JU85   A0A158NWC5   A0A0L7R6A1   A0A2U3TA36   J3JYK9   M1JC66   K9MV51   A0A2S2QDY5   A0A346THP4   V5GNQ6   D6WAG3   Q0ZLZ3   A0A232EQR4   A0A1B6FH32   A0A1B6M566   A0A1B6JYA9   Q17MD6   T1DF61   A0A1Q3EUH6   A0A3G2WMB5   A0A023EHH9   A0A2J7PZ08   A0A0C5INH4   A0A0M3QZK0   A0A2M4CVA7   A0A2M3ZFN5   A0A154PRJ4   A0A0B4L1U1   A0A1I8P1S9   A0A2J7PZ09   J7FVE5   A0A1L8EH88   A0A0L0BRQ4   E7E1I2   A0A0Q9WDB5   A0A0A1WZX7   A0A182F9Z7   A0A2M4A8V3   A0A1Q3FZC1   A0A0Q9XQN6   A0A0K8TNF3   A0A182JDV1   D3TMD8   A0A023EI36   W8BDA4   A0A336LHJ3   D3TMD9   A0A0K8W030   A0A1A9WCI5   A0A1L8EC92   A0A1B0CXA2   A0A1W4VTW3   A0A0R3NYI1   A0A0R1EAR9   A0A0P9A5Q0   A0A0Q5T419   Q9VWG1  

Pubmed

17031055    19121390    22651552    26354079    21510953    25844646    + More
26227816    17603110    23622113    22118469    26196395    25514417    28755305    24947609    20075255    30249741    22517445    25474469    26334808    27129103    30226893    23691247    24508170    21347285    22516182    23357950    25401762    26823975    18362917    19820115    17298555    28648823    17510324    24330624    24945155    26108605    25315136    17994087    25830018    26369729    20353571    24495485    15632085    17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356   

EMBL

BABH01000869    BABH01000870    AB195972    BAD74197.1    JQ744273    AGC39039.1    + More
NWSH01001121    PCG72499.1    AK402416    BAM19038.1    KQ460205    KPJ16925.1    ODYU01000369    SOQ35037.1    AK401157    BAM17779.1    HM046612    ADK55519.1    MG846907    AXY94759.1    KM881571    AJQ22646.1    JTDY01003044    KOB70260.1    EF207972    ABS57447.1    GAIX01005583    JAA86977.1    AGBW02005699    OWR55264.1    KP843895    AKS40074.1    KQ459299    KPJ01987.1    JX491642    RSAL01000144    AGC23338.1    RVE45965.1    KM217075    KM217076    AJA32864.1    KC710021    AGM90554.1    KX845563    ATB54994.1    KX958484    ASQ43200.1    KM923788    AJG43847.1    KJ461922    AHW45924.1    KY195973    APP93214.1    KZ288219    PBC32321.1    JR038184    AEY58151.1    KM221895    AIU47036.1    QOIP01000001    RLU27591.1    FJ798094    JN129831    ACO57620.1    AEM45800.1    GECL01003060    JAP03064.1    GBBI01000190    JAC18522.1    GBGD01003072    JAC85817.1    KM221896    AIU47037.1    GDKW01000482    JAI56113.1    ACPB03006340    JR038183    AEY58150.1    MH490974    AYD37987.1    AK417010    BAN20225.1    KK107154    EZA56819.1    GFXV01004983    MBW16788.1    ABLF02013761    ADTU01002960    ADTU01002961    ADTU01002962    KQ414648    KOC66339.1    KX161873    ART30111.1    BT128338    AEE63296.1    KC161298    AGE92593.1    JX627813    GBHO01033208    GBRD01013809    GDHC01021538    AFX84563.1    JAG10396.1    JAG52017.1    JAP97090.1    GGMS01006754    MBY75957.1    MG265921    AXU24977.1    GALX01002702    JAB65764.1    KQ971312    EEZ98629.2    DQ355964    ABC84493.1    NNAY01002722    OXU20693.1    GECZ01020251    JAS49518.1    GEBQ01008910    JAT31067.1    GECU01003519    JAT04188.1    CH477207    EAT47813.1    GALA01000762    JAA94090.1    GFDL01016088    JAV18957.1    MH830310    AYP00113.1    GAPW01004760    JAC08838.1    NEVH01020341    PNF21569.1    KJ746491    AJP36910.1    CP012528    ALC49553.1    GGFL01004590    MBW68768.1    GGFM01006552    MBW27303.1    KQ435066    KZC14357.1    KC620422    AHE77373.1    PNF21568.1    JX112892    AFP54304.1    GFDG01000784    JAV18015.1    JRES01001467    KNC22678.1    HQ588353    KA645710    ADT92004.1    AFP60339.1    CH940655    KRF82636.1    GBXI01009673    JAD04619.1    GGFK01003913    MBW37234.1    GFDL01002148    JAV32897.1    CH933814    KRG07458.1    GDAI01001681    JAI15922.1    EZ422590    ADD18866.1    GAPW01004555    JAC09043.1    GAMC01015419    JAB91136.1    UFQS01000005    UFQT01000005    SSW96939.1    SSX17326.1    CCAG010008635    CCAG010008636    EZ422591    ADD18867.1    GDHF01007875    JAI44439.1    GFDG01002442    JAV16357.1    AJWK01033474    CH379063    KRT06114.1    CM000162    KRK06568.1    CH902621    KPU81626.1    CH954180    KQS30099.1    AE014298    AY061439    AAF48980.1    AAL28987.1    AHN59916.1   

Proteomes

UP000005204    UP000218220    UP000053240    UP000037510    UP000007151    UP000053268    + More
UP000283053    UP000242457    UP000002358    UP000279307    UP000015103    UP000053097    UP000007819    UP000005205    UP000053825    UP000007266    UP000215335    UP000008820    UP000235965    UP000092553    UP000076502    UP000095300    UP000037069    UP000095301    UP000008792    UP000069272    UP000009192    UP000075880    UP000092444    UP000091820    UP000092461    UP000192221    UP000001819    UP000002282    UP000007801    UP000008711    UP000000803   

PRIDE

Q5R1P5    Q9VWG1   

Pfam

PF00011   HSP20

Interpro

IPR001436   Alpha-crystallin/HSP        + More
IPR002068   A-crystallin/Hsp20_dom       
IPR008978   HSP20-like_chaperone       

SUPFAM

SSF49764   SSF49764       

Gene 3D

2.60.40.790    

ProteinModelPortal

Q5R1P5   R4IT81   A0A2A4JL13   I4DM98   A0A194RHX1   A0A2H1V2G5   + More
I4DIN9   E2F396   A0A3G1T1A3   A0A0E3JC68   A0A0L7L4C4   A7KCX9   S4PX64   A0A212FNE3   A0A0K0XQX2   A0A194Q8Y7   L7SVB9   A0A0A7RI59   R9S074   A0A2H4LHL9   A0A222NUL7   A0A0B5L3T3   A0A0A7BZM5   A0A2H4G3L3   A0A2A3EMQ1   V9ICI5   A0A097PHN7   K7ITW5   A0A3L8E4H7   K7ITW4   K7ITW3   C1K660   A0A0V0G5V3   A0A023FAM7   A0A069DQC2   A0A097PHP1   A0A0P4VVM9   T1HWW7   V9IAP4   A0A386GVZ1   R4WI21   A0A026WNY2   A0A2H8TUD8   J9JU85   A0A158NWC5   A0A0L7R6A1   A0A2U3TA36   J3JYK9   M1JC66   K9MV51   A0A2S2QDY5   A0A346THP4   V5GNQ6   D6WAG3   Q0ZLZ3   A0A232EQR4   A0A1B6FH32   A0A1B6M566   A0A1B6JYA9   Q17MD6   T1DF61   A0A1Q3EUH6   A0A3G2WMB5   A0A023EHH9   A0A2J7PZ08   A0A0C5INH4   A0A0M3QZK0   A0A2M4CVA7   A0A2M3ZFN5   A0A154PRJ4   A0A0B4L1U1   A0A1I8P1S9   A0A2J7PZ09   J7FVE5   A0A1L8EH88   A0A0L0BRQ4   E7E1I2   A0A0Q9WDB5   A0A0A1WZX7   A0A182F9Z7   A0A2M4A8V3   A0A1Q3FZC1   A0A0Q9XQN6   A0A0K8TNF3   A0A182JDV1   D3TMD8   A0A023EI36   W8BDA4   A0A336LHJ3   D3TMD9   A0A0K8W030   A0A1A9WCI5   A0A1L8EC92   A0A1B0CXA2   A0A1W4VTW3   A0A0R3NYI1   A0A0R1EAR9   A0A0P9A5Q0   A0A0Q5T419   Q9VWG1  

PDB

5LTW     E-value=2.19826e-12,     Score=170

KEGG

692534    no KO assigned | (RefSeq) Hsp21.4; heat shock protein hsp21.4

GO

GO:0046872   GO:0061077   GO:0030018   GO:0005654   GO:0042026   GO:0005829   GO:0051082  

Length:

187

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00018

Exp number, first 60 AAs:

0.00018

Total prob of N-in:

0.16040

outside

1  -  187

 

 

Pi

29.147483

Theta

26.986533

Tajima's D

0.582141

CLR

1.411286

CSRT

0.544272786360682

Interpretation

Uncertain