Gene

KWMTBOMO07855  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA001206

Annotation

chaperonin_containing_t-complex_polypeptide_1_beta_subunit_[Bombyx_mori]

Location

Bomo_Chr13(-):8496260-8503757      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 3.581

CDS

ATGGTATCATTAAATCCAATTCGTATCCTTAAAAATGAAGCAGAAGAGGAGAAAGCTGAAGTTGCCCGGATGTCCAGTTTCATCGGTGCTATTGCCATAGGAGATTTGGTAAAGAGTACTTTAGGTCCCAAAGGAATGGATAAGATCTTAGTTTCCTGCGGGAGGAACTCTGGTCAGGTCGAAGTAACAAATGATGGTGCTACGATATTGAAATCTATCGGTGTGGATAATCCTGCTGCTAAAATCCTAGTAGATATGTCTAAGGTACAAGATGAAGAAGTCGGAGATGGCACCACATCTGTTACAGTTTTGGCTGCTGAATTACTTCGAGAGGCTGAAAAATTAATTGAACAAAAACTGCACCCTCAAACAATCATTGCTGGTTGGAGAATTGCTTCTGATGCAGCCAAACAAGCTCTTGCAGAAGCTAGCTTTGATCATCAGAAGAACTTAAATGAGGCTTCATTAAGAGTGGATTTAGAAAACATCGCACGGACCACACTGAGCTCAAAGATCCTTTCAAATCACAAAGAGCATTTCACAAAATTAGCAGTTGATGCAGTTTTGCGTTTGAAAGGATCTGGTAATTTAAAAGCTATCCAAATTATCAAAATATCTGGAGGTCTTCTTGAAGAGTCATTCTTGGATGAAGGGTTCTTGCTAAACAAAAAAGTTGGTGTACATCAACCAAAGAAAGTAGAAAATGCTAACATCCTTATTGCAAACACACCAATGGACACTGACAAGATTAAAGTGTTTGGTTCCACAATTAAAGTGGATTCAATGGCCAAGATTGCTGAATTGGAAGTAGCTGAGAAAGAGAAAATGAAGGACAAAGTGAACAAGATTTTAGCACACAAATGTAATGTCTTCATTAACAGACAACTTATATACAACTACCCAGAGCAGTTGTTTGCTGATGCTGGAGTAATGGCAATTGAGCATGCTGATTTCGAAGGTATCGAAAGGCTTGGCTTGGTCACTGGAGGGGAAATTGTGTCAACATTTGACTCACCAGACAAAGTGAAACTTGGTCACTGCAAATTGATCGAAGAGGTTCTGATTGGTGATGAGAGCTTGATCCGCTTCTCTGGTGTAGCGTTGGGCTCGGCTTGCACGATCGTAATCCGTGGTGCCACGCAACAAGTTATCGACGAAGCTGAGCGTTCACTCCATGATGCGCTTTGCGTGCTTGCTGCTACTGTAAAAGAACCGAAGGTCATATGTGGAGGAGGGGCTGGTGAAATGCTAATGGCAGAAGCAGCTTCCCGCGCCGGCGCTCGCACAGCCGGGAAGGAAGCCGCAGCAGCCGAAGCCTTTGCAGTCGCGCTCCGGAGACTGCCGTCCGCTGTCGCCGACAATGCTGGCTACGACAGTGCTGATCTCATTGCTCGACTCAGAGCTCATCATTCTCGAGGAGAAAACACTATGGGATTAGATATGCAAAACGGCACTGTTGGTGATATGAAGAAGTTGGGTGTGACCGAGTCGTATGTCGTAAAGAGACAGGTCCTGTTGTCTGCGGCTGAAGCGGCCGAGATGATTCTTCGTGTCGATAACATTCTGAAGGCAGCACCCAGACGCCGCGGACCCGACCGTCGCCCATGTTAA

Protein

MVSLNPIRILKNEAEEEKAEVARMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVLAAELLREAEKLIEQKLHPQTIIAGWRIASDAAKQALAEASFDHQKNLNEASLRVDLENIARTTLSSKILSNHKEHFTKLAVDAVLRLKGSGNLKAIQIIKISGGLLEESFLDEGFLLNKKVGVHQPKKVENANILIANTPMDTDKIKVFGSTIKVDSMAKIAELEVAEKEKMKDKVNKILAHKCNVFINRQLIYNYPEQLFADAGVMAIEHADFEGIERLGLVTGGEIVSTFDSPDKVKLGHCKLIEEVLIGDESLIRFSGVALGSACTIVIRGATQQVIDEAERSLHDALCVLAATVKEPKVICGGGAGEMLMAEAASRAGARTAGKEAAAAEAFAVALRRLPSAVADNAGYDSADLIARLRAHHSRGENTMGLDMQNGTVGDMKKLGVTESYVVKRQVLLSAAEAAEMILRVDNILKAAPRRRGPDRRPC

Similarity

Belongs to the TCP-1 chaperonin family.

Uniprot

Q2F6C2   A0A2H1V2G3   A0A2A4JL50   S4PDE5   A0A212ESF7   A0A194RGI0   + More
A0A194Q8Z1   A0A182UXK1   A0A182TK59   A0A182LMA0   A0A182HI69   A0A1B6CS56   A0A1B6GB87   Q7Q1P2   A0A182QGJ2   D6WBW7   U5EZ38   A0A182YFT8   A0A182KFJ9   A0A1B6LBH7   A0A023ETP2   A0A1S4FHA0   V5GNR1   A0A1Y1L6K5   A0A182M9I4   A0A182VU05   A0A182RVZ2   A0A182XN24   A0A182PTU9   A0A2J7RCP8   A0A1L8DUA4   V5RF49   A0A1W4X083   A0A336M8P4   A0A336MS14   T1PFF7   A0A1Q3FWH6   A0A182NBG3   T1E7V0   A0A182F260   A0A2M4BJV3   W5JEP1   E0VTG8   A0A0A1WR41   A0A1B0CV76   D3TMR1   A0A0L0CJW2   A0A034WLE7   A0A1J1IQ64   A0A088AAV5   F2D638   A0A0K8WEE3   A0A0K8U9A7   A0A1L8EDC8   A0A1I8P7C9   A0A1A9UEE5   A0A2H8U143   A0A2S2NU54   A0A0N0BHT9   A0A1L8EDQ5   A0A0K8TSS4   K7J2G8   J9K0Z9   A0A2A3EE83   W8BBM5   A0A1B0FGM9   A0A310SE98   A0A2M4A9Q8   A0A067RHG6   A0A2H8TFP5   A0A1B0DIB3   A0A1B0ADK9   F4WS67   A0A0M5JAW2   A0A158N9W9   A0A0L7QTR4   A0A1A9YS69   A0A151WRU9   A0A151ISP9   A0A182J824   A0A1A9X0B7   J9JK95   A0A0C9QE42   A0A0C9RYP3   J3JUX5   A0A1Q3FX16   N6U469   A0A3B0KWY2   B4M281   B4JIV9   A0A3L8E321   B3MZK0   A0A1W4UD59   E2BQ93   E2AE48   Q29GX0   B4IJQ6   B3NUH9   B4PZY2   B4N1Z4  

Pubmed

19121390    23622113    22118469    26354079    20966253    12364791    + More
18362917    19820115    25244985    24945155    26483478    28004739    25315136    20920257    23761445    20566863    25830018    20353571    26108605    25348373    21415278    26369729    20075255    24495485    24845553    21719571    21347285    22516182    23537049    17994087    30249741    20798317    15632085    17550304   

EMBL

BABH01000874    DQ311150    ABD36095.1    ODYU01000369    SOQ35035.1    NWSH01001121    + More
PCG72496.1    GAIX01004977    JAA87583.1    AGBW02012794    OWR44428.1    KQ460205    KPJ16923.1    KQ459299    KPJ01988.1    APCN01005638    GEDC01021040    JAS16258.1    GECZ01010074    JAS59695.1    AAAB01008980    EAA14559.4    AXCN02000619    KQ971315    EEZ97857.1    GANO01001489    JAB58382.1    GEBQ01019093    JAT20884.1    JXUM01135353    GAPW01000888    KQ568258    JAC12710.1    KXJ69077.1    GALX01002697    JAB65769.1    GEZM01068909    JAV66707.1    AXCM01002101    NEVH01005885    PNF38611.1    GFDF01004062    JAV10022.1    KF621133    AHB33469.1    UFQT01000702    SSX26646.1    UFQT01002349    SSX33252.1    KA646643    AFP61272.1    GFDL01003081    JAV31964.1    GAMD01003328    JAA98262.1    GGFJ01004143    MBW53284.1    ADMH02001369    ETN62822.1    DS235765    EEB16674.1    GBXI01013302    JAD00990.1    AJWK01030162    AJWK01030163    EZ422713    ADD18989.1    JRES01000302    KNC32535.1    GAKP01004359    JAC54593.1    CVRI01000057    CRL02381.1    AK359348    BAJ90559.1    GDHF01002776    JAI49538.1    GDHF01029374    JAI22940.1    GFDG01002062    JAV16737.1    GFXV01008104    MBW19909.1    GGMR01007969    MBY20588.1    KQ435742    KOX76688.1    GFDG01002060    JAV16739.1    GDAI01000427    JAI17176.1    ABLF02030785    KZ288267    PBC30093.1    GAMC01016029    GAMC01016027    JAB90526.1    CCAG010019381    KQ770716    OAD52605.1    GGFK01004170    MBW37491.1    KK852506    KDR22488.1    GFXV01001138    MBW12943.1    AJVK01034336    GL888300    EGI62961.1    CP012528    ALC49661.1    ADTU01009804    KQ414742    KOC61944.1    KQ982796    KYQ50586.1    KQ981064    KYN09856.1    ABLF02011588    ABLF02011589    GBYB01012673    JAG82440.1    GBYB01014410    JAG84177.1    BT127040    KB632379    AEE62002.1    ERL94112.1    GFDL01003082    JAV31963.1    APGK01040371    KB740979    ENN76400.1    OUUW01000015    SPP88558.1    CH940651    EDW65785.2    CH916370    EDV99523.1    QOIP01000001    RLU27131.1    CH902635    EDV33801.2    GL449698    EFN82147.1    GL438827    EFN68281.1    CH379064    EAL31989.2    CH480849    EDW51264.1    CH954180    EDV46302.2    CM000162    EDX02188.2    CH963925    EDW78383.2   

Proteomes

UP000005204    UP000218220    UP000007151    UP000053240    UP000053268    UP000075903    + More
UP000075902    UP000075882    UP000075840    UP000007062    UP000075886    UP000007266    UP000076408    UP000075881    UP000069940    UP000249989    UP000075883    UP000075920    UP000075900    UP000076407    UP000075885    UP000235965    UP000192223    UP000095301    UP000075884    UP000069272    UP000000673    UP000009046    UP000092461    UP000037069    UP000183832    UP000005203    UP000095300    UP000078200    UP000053105    UP000002358    UP000007819    UP000242457    UP000092444    UP000027135    UP000092462    UP000092445    UP000007755    UP000092553    UP000005205    UP000053825    UP000092443    UP000075809    UP000078492    UP000075880    UP000091820    UP000030742    UP000019118    UP000268350    UP000008792    UP000001070    UP000279307    UP000007801    UP000192221    UP000008237    UP000000311    UP000001819    UP000001292    UP000008711    UP000002282    UP000007798   

PRIDE

Q2F6C2    A0A088AAV5    K7J2G8   

Pfam

PF00118   Cpn60_TCP1

Interpro

IPR027413   GROEL-like_equatorial_sf        + More
IPR027409   GroEL-like_apical_dom_sf       
IPR002194   Chaperonin_TCP-1_CS       
IPR017998   Chaperone_TCP-1       
IPR012716   Chap_CCT_beta       
IPR002423   Cpn60/TCP-1       
IPR027410   TCP-1-like_intermed_sf       

SUPFAM

SSF52029   SSF52029        + More
SSF48592   SSF48592       
SSF54849   SSF54849       

Gene 3D

1.10.560.10     3.30.260.10     3.50.7.10    

CDD

cd03336  TCP1_beta

ProteinModelPortal

Q2F6C2   A0A2H1V2G3   A0A2A4JL50   S4PDE5   A0A212ESF7   A0A194RGI0   + More
A0A194Q8Z1   A0A182UXK1   A0A182TK59   A0A182LMA0   A0A182HI69   A0A1B6CS56   A0A1B6GB87   Q7Q1P2   A0A182QGJ2   D6WBW7   U5EZ38   A0A182YFT8   A0A182KFJ9   A0A1B6LBH7   A0A023ETP2   A0A1S4FHA0   V5GNR1   A0A1Y1L6K5   A0A182M9I4   A0A182VU05   A0A182RVZ2   A0A182XN24   A0A182PTU9   A0A2J7RCP8   A0A1L8DUA4   V5RF49   A0A1W4X083   A0A336M8P4   A0A336MS14   T1PFF7   A0A1Q3FWH6   A0A182NBG3   T1E7V0   A0A182F260   A0A2M4BJV3   W5JEP1   E0VTG8   A0A0A1WR41   A0A1B0CV76   D3TMR1   A0A0L0CJW2   A0A034WLE7   A0A1J1IQ64   A0A088AAV5   F2D638   A0A0K8WEE3   A0A0K8U9A7   A0A1L8EDC8   A0A1I8P7C9   A0A1A9UEE5   A0A2H8U143   A0A2S2NU54   A0A0N0BHT9   A0A1L8EDQ5   A0A0K8TSS4   K7J2G8   J9K0Z9   A0A2A3EE83   W8BBM5   A0A1B0FGM9   A0A310SE98   A0A2M4A9Q8   A0A067RHG6   A0A2H8TFP5   A0A1B0DIB3   A0A1B0ADK9   F4WS67   A0A0M5JAW2   A0A158N9W9   A0A0L7QTR4   A0A1A9YS69   A0A151WRU9   A0A151ISP9   A0A182J824   A0A1A9X0B7   J9JK95   A0A0C9QE42   A0A0C9RYP3   J3JUX5   A0A1Q3FX16   N6U469   A0A3B0KWY2   B4M281   B4JIV9   A0A3L8E321   B3MZK0   A0A1W4UD59   E2BQ93   E2AE48   Q29GX0   B4IJQ6   B3NUH9   B4PZY2   B4N1Z4  

PDB

4B2T     E-value=1.98028e-175,     Score=1582

KEGG

692797    K09494 T-complex protein 1 subunit beta | (RefSeq) chaperonin containing t-complex polypeptide 1 bet

GO

GO:0005737   GO:0005524   GO:0006457   GO:0051082   GO:0005832   GO:0005506   GO:0030145   GO:0050906   GO:0005515   GO:0016818   GO:0003707   GO:0051537   GO:0005829  

PANTHER

PTHR11353:SF23  

Subcellular location

Cytoplasm  

Length:

536

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0512000000000001

Exp number, first 60 AAs:

0.03929

Total prob of N-in:

0.00253

outside

1  -  536

 

 

Pi

279.908947

Theta

207.035787

Tajima's D

1.924217

CLR

0.149501

CSRT

0.868956552172391

Interpretation

Uncertain