Gene

KWMTBOMO07849

Pre Gene Modal

BGIBMGA009519

Annotation

Yokozuna_[Bombyx_mori]

Location

Bomo_Chr13(+):8268593-8271355      View in EpiBrowser

Full name

Retrovirus-related Pol polyprotein from transposon TNT 1-94      

Location in the cell

Nuclear   Reliability : 3.353

CDS

ATGCGCTATGACAATGAAAGCAACTTACAGCAATATTTCCTAAAATTTGAAGGAATTCTTAGCGAATTAGCGGCAATCAACGTAAACGTCGATGTAGAAGACCAAATTTGCTATCTGCTGTCTTCTCTACCAAAGTTAAACGATCAAGTAATTACATCAATTGAGACTATGGCTTCCGAGAAACAGCTGAACCTAGAATTTGTTAAAGCAAGACTACTCGATATGGAGACAAAGTTAAAAATGGACAGAAATAGTGAAAGCTATGAGAATAATGCCTTCATCACGTGCCACTCCTGCGGAAAACGTGGACACAAATCATTCGAATGCCGAAGATCAGGACGAGGACAAGGGCCGAGTAGAGGACAGTCATTGACACGAGGATGGAGCTATCCAAGATCGCGTGGACGCTCATTTAGAGGAAATTCAAGTTCACGACATACAACGTATCAACATACTTCAGCAGCAGGCAGAGACGACAAAGAAATAGGTTTCATTGCTAGCAATATTATTGCTAATGTGGGTGAATGTGGTAACATAGAACTAATTATAGACTCAGGATGTACGGAGCATTTAATAAATGAAAAATATGAAAATTATATGACGGATATTACGTACTTAGATAAACATGTCAAAATATTCGTAGCTAACGGCCAATGTATTACAACTAGTAAAAGAGGTAAACTTAAAGTAAAATATCAAAATACTACGATTAATATTGATGCTCTAATTGTGAAAGATGTTTCATACAATTTGTTATCAGTGAAAAAGATTGTCGAGGCAGGTTTTAACATAAACTTTAATAAATACAATGTTAAAATATTTAATAAAAATACATTTTTATGCGGCACCGTGCAAGGAAAATTGTATAAGCTACAAGCCGAATTATGTAAGTCCGAAGTTTGTAATGTTACTGATGCGGCAGATCTATGGCACAAACGTTTAGGTCATTTAAATAGGAAAAGCCTTAATATACTAAAATTACCTGTATCTGATAGAATTTGCAGTCCCTGTATGGAGGGCAAAGCCACCCGAAGCCCATTCACGTCTATCCCAAAGCCTAGAACGAAAATGACAGCCGAGATGCTTCACACAGACATAGCAGGACCGATCAGACATCAAGGACCTAATGGTGAAAAATATTTTATGACAATTATTGACGATTTCTCTCATTTTTGCGTAGTGTATCCCCTGAAGAGCAAATCTGAAGCAACAGAACGACTGATGAACTATGTATTAAGAATTGAAAACGAAACGGGGAATAAAGTTAAAAGAATTAGATGCGATAATGGTGGAGAGTACACTGCTAATAGTTTGAAACTTTTTTGCATAAATAGAGGTATTAGTTTAGAATACACATTACCGTACACGCCACAACTTAATGGCATATCAGAACGGATGAACCGCACATTATGCGACAAAACGAGGACTCTATTAGCGGAAACCAATTTGCCAAAACATCTGTGGTGCGAAGCGATACAATGTGCAGTTTACCAATTAAACAGATCGCCATCATGGGCCATAAACTTCAAGACACCCAGCGGAATATTTTTTGGTAAAAACGACCTATCGAGATTGAGAGTATTTGGTTCCAAAGCTTGGGCTACTATAGTACCCAAACCGGACAAGTTTGCCAAGAGAGCAAAAGAAACAAGAATGGTAGGTTATGGAACTGTTGGTTACAGATTATGGGATCCAGAAGAAGATAAAATAGTTATTTCCAGAGATGTAAGATTTGATGAAAGCGATATTAAATTCAAAAATAACGAAGAAGTGAAACAAGTTAGATATATTCAAGACAAAGAAGAAGAAATCAATAAAGAAAATCAAGATATTGTAGAACAGGAAGATGAATTTAAAGATGCAGAAATGAACACTGATCAGATTGAAGAAGCAATAATCAGACCCAAAAGAACGATAAATCCTCCTGCTTATCTTAAAGATTACGAGACGAATATAGAAAACATAAATGAAACTAATATTGTTATATGTCTGAGTGCAAATGCACCAGAAACTTTCGAAGAAGCTATAAAAGAACCAGAATGGAAAAACGCAATCAATAAAGAGCTAGATGCACTCCAAAGAGTACAAACGTGGGAAGAACAAGAAATAACCGATGGAAGAAAGCTCATAGATACAAAATGGATATTTAAACAAAAAGAAGATGGAACAAAAAAGGCAAGACTGGTAGCTAGAGGCTTCCAACAAAAGAAAAAAGATATTTTTGACAGCGTTTATGCACCCGTTGCTAGACATTCAACCATAAGAATGATCTTATCAAAAGCTGTACAAGATGATTTAAAGATTATTCAACTAGACATTCCCACTGCATTCCTAAATGGAAAATTGAAGTCTGATGTATTTATCAAAATACCCCAAGGATTAGAAATAAAAAATAATAATAATACAGCATTAAAACTAAAGAGAGCATTGTATGGATTGATTGAATCACCAAAATGTTGGAATGAAACAATTGACGAATTTGCGAAAGCTAAGGGATTCCAAAGATCAGAATATGATTACTGTTTGTATTACAAAGAAGATTGCTGGATGCTCATTTACGTGGACGATATCCTAATCATTGGAAACGGGGAAGATATTATTAAAGCACTTAAGGAGGAGTTTAACGCAAAATATATGGGCGAAATGAAAAAACTTTCTCGGAATGGAAGTTAA

Protein

MRYDNESNLQQYFLKFEGILSELAAINVNVDVEDQICYLLSSLPKLNDQVITSIETMASEKQLNLEFVKARLLDMETKLKMDRNSESYENNAFITCHSCGKRGHKSFECRRSGRGQGPSRGQSLTRGWSYPRSRGRSFRGNSSSRHTTYQHTSAAGRDDKEIGFIASNIIANVGECGNIELIIDSGCTEHLINEKYENYMTDITYLDKHVKIFVANGQCITTSKRGKLKVKYQNTTINIDALIVKDVSYNLLSVKKIVEAGFNINFNKYNVKIFNKNTFLCGTVQGKLYKLQAELCKSEVCNVTDAADLWHKRLGHLNRKSLNILKLPVSDRICSPCMEGKATRSPFTSIPKPRTKMTAEMLHTDIAGPIRHQGPNGEKYFMTIIDDFSHFCVVYPLKSKSEATERLMNYVLRIENETGNKVKRIRCDNGGEYTANSLKLFCINRGISLEYTLPYTPQLNGISERMNRTLCDKTRTLLAETNLPKHLWCEAIQCAVYQLNRSPSWAINFKTPSGIFFGKNDLSRLRVFGSKAWATIVPKPDKFAKRAKETRMVGYGTVGYRLWDPEEDKIVISRDVRFDESDIKFKNNEEVKQVRYIQDKEEEINKENQDIVEQEDEFKDAEMNTDQIEEAIIRPKRTINPPAYLKDYETNIENINETNIVICLSANAPETFEEAIKEPEWKNAINKELDALQRVQTWEEQEITDGRKLIDTKWIFKQKEDGTKKARLVARGFQQKKKDIFDSVYAPVARHSTIRMILSKAVQDDLKIIQLDIPTAFLNGKLKSDVFIKIPQGLEIKNNNNTALKLKRALYGLIESPKCWNETIDEFAKAKGFQRSEYDYCLYYKEDCWMLIYVDDILIIGNGEDIIKALKEEFNAKYMGEMKKLSRNGS

Catalytic Activity

a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1)

Keywords

Aspartyl protease   Complete proteome   Endonuclease   Hydrolase   Metal-binding   Nuclease   Nucleotidyltransferase   Protease   Reference proteome   RNA-directed DNA polymerase   Transferase   Transposable element   Zinc   Zinc-finger  

Feature

chain  Retrovirus-related Pol polyprotein from transposon TNT 1-94

Uniprot

O96968   A0A146L6N5   A0A0A9XG27   A0A0A9Z0I6   A0A146KTS1   A0A1B6DFK3   + More
A0A0A9WQU6   A0A0A9YQT1   A0A0A9WLY1   A0A0A9ZBW6   A0A146LV28   A0A0T6AT79   A0A1Y1M4K4   A0A1W7R6C3   A0A182GA29   A0A182GSW5   A0A0J7KI47   A0A0J7K6U3   A0A224XA26   A0A1Y1L115   A0A1Y1JXU0   A0A0A9WQA3   A0A2S2PNK0   A0A023F102   A0A182G1G7   A0A182H4X3   J9KJ72   A0A1B6F1U1   A0A1W7R6I5   A0A1Y1MQF0   A0A2R6RYD4   A0A0A9ZCB8   A0A182GGE6   A0A1X7U495   A0A087SVE4   A0A151RCT9   A0A0J7K689   A0A1W7R685   A0A1Y1MJE9   A0A1Y1MP14   A0A0A9W6B0   A0A151RYL1   A0A1B6FK59   A0A151THM1   A0A151S6I6   A0A151RAL1   A0A151R6U8   B8YLY5   A0A151QZS0   H6U1F0   B8YLY7   B8YLY4   A0A1W7R6A3   A0A2K3N1R3   A0A1B6C2D3   A0A068B703   Q9ZRJ0   H6U1E9   Q967L5   A0A151T355   B8YLY3   B8YLY6   A0A2R6QHR4   A0A2N9H171   A0A151R2G6   A0A151TKT1   A0A182GFZ6   A0A2N9IWX1   A0A151SDY6   A0A2K3MYT4   A0A2N9FMR2   A0A151RJN4   A0A2N9GLP2   A0A2N9EYI8   A0A2P6SP23   A0A2N9GHK3   A0A2N9ETM3   A0A2N9GY85   A0A2N9HLU0   P10978   A0A151QNH6   A0A2N9EM80   A0A2N9I6N4   A0A151SHZ9   A0A2N9FSJ8   A0A2Z6NRJ0   A0A2N9H4V1   A0A251VAZ6   A0A251V331   A0A151QNH5   A0A2N9ETC8   A0A151T469   A0A151R6T7   A0A151TMN9   A0A034W404   A0A2N9FQJ1   A0A151RBY1   A0A2N9F319   A0A2N9IUS6  

Pubmed

10333565    26823975    25401762    28004739    26483478    25474469    + More
29661190    22057054    19656907    22427337    24500806    28382043    8624443    11319273    2536143    28538728    25348373   

EMBL

AB014676    BAA74713.1    GDHC01015802    JAQ02827.1    GBHO01027564    JAG16040.1    + More
GBHO01004832    JAG38772.1    GDHC01019310    JAP99318.1    GEDC01012841    GEDC01000503    JAS24457.1    JAS36795.1    GBHO01034731    JAG08873.1    GBHO01009623    JAG33981.1    GBHO01035173    JAG08431.1    GBHO01002761    JAG40843.1    GDHC01007058    JAQ11571.1    LJIG01022881    KRT78250.1    GEZM01042286    JAV79968.1    GEHC01000928    JAV46717.1    JXUM01155348    KQ572178    KXJ68066.1    JXUM01085595    KQ563513    KXJ73717.1    LBMM01007046    KMQ90088.1    LBMM01012492    KMQ86193.1    GFTR01008662    JAW07764.1    GEZM01072005    JAV65635.1    GEZM01098220    JAV53943.1    GBHO01034936    JAG08668.1    GGMR01018348    MBY30967.1    GBBI01004033    JAC14679.1    JXUM01136904    KQ568499    KXJ68982.1    JXUM01025857    KQ560736    KXJ81076.1    ABLF02041793    GECZ01025604    JAS44165.1    GEHC01000878    JAV46767.1    GEZM01028916    JAV86196.1    NKQK01000002    PSS35035.1    GBHO01002616    JAG40988.1    JXUM01011189    KQ560325    KXJ83029.1    KK112142    KFM56833.1    KQ483843    KYP40337.1    LBMM01012772    KMQ86003.1    GEHC01000966    JAV46679.1    GEZM01032204    JAV84770.1    JAV86195.1    GBHO01040663    JAG02941.1    KQ483522    KYP47640.1    GECZ01019212    JAS50557.1    CM003608    KYP66486.1    KQ483456    KYP50361.1    KQ483890    KYP39660.1    KQ484038    KYP38095.1    FJ544854    ACL97385.1    KQ484324    KYP35753.1    JN402333    AFB73912.1    FJ544857    ACL97387.1    FJ544853    ACL97384.1    GEHC01000959    JAV46686.1    ASHM01015075    PNX96991.1    GEDC01029908    JAS07390.1    KF740825    AIC77183.1    D83003    BAA11674.1    JN402332    AFB73911.1    AY009101    AAK12626.1    CM003610    KYP61490.1    FJ544851    ACL97383.1    FJ544856    ACL97386.1    NKQK01000016    PSS08126.1    OIVN01002656    SPD05381.1    KQ484186    KYP36645.1    CM003607    KYP67664.1    JXUM01060983    KQ562129    KXJ76624.1    OIVN01006239    SPD28653.1    KQ483417    KYP53032.1    ASHM01014005    PNX95963.1    OIVN01000991    OIVN01001835    SPC88370.1    SPC98114.1    KQ483702    KYP42748.1    OIVN01002055    SPD00174.1    OIVN01000404    SPC79669.1    PDCK01000039    PRQ60431.1    OIVN01002247    SPD01987.1    OIVN01000313    SPC78143.1    OIVN01002516    SPD04274.1    OIVN01003683    SPD12935.1    X13777    KQ485623    KYP31853.1    OIVN01000189    SPC75922.1    OIVN01004879    SPD19723.1    CM003613    KYP54398.1    OIVN01001130    SPC90232.1    DF973742    GAU39052.1    OIVN01002854    SPD06945.1    CM007892    OTG31811.1    CM007893    OTG30017.1    KQ485638    KYP31826.1    OIVN01000557    SPC82046.1    KYP61818.1    KYP63036.1    KQ484010    KYP38330.1    CM003606    KYP68287.1    GAKP01010102    JAC48850.1    OIVN01001052    SPC89229.1    KQ483853    KYP40164.1    OIVN01000521    SPC81512.1    OIVN01006261    SPD29147.1   

Proteomes

UP000069940    UP000249989    UP000036403    UP000007819    UP000241394    UP000007879    + More
UP000054359    UP000075243    UP000236291    UP000238479    UP000084051    UP000215914   

PRIDE

O96968   

Pfam

PF00665   rve        + More
PF07727   RVT_2
PF13976   gag_pre-integrs
PF13961   DUF4219
PF00098   zf-CCHC
PF13358   DDE_3
PF16495   SWIRM-assoc_1
PF08534   Redoxin
PF00106   adh_short
PF14244   Retrotran_gag_3
PF00626   Gelsolin
PF08033   Sec23_BS

Interpro

IPR036397   RNaseH_sf        + More
IPR039537   Retrotran_Ty1/copia-like       
IPR001584   Integrase_cat-core       
IPR013103   RVT_2       
IPR012337   RNaseH-like_sf       
IPR001878   Znf_CCHC       
IPR036875   Znf_CCHC_sf       
IPR021109   Peptidase_aspartic_dom_sf       
IPR025724   GAG-pre-integrase_dom       
IPR025314   DUF4219       
IPR038717   Tc1-like_DDE_dom       
IPR032451   SMARCC_C       
IPR036291   NAD(P)-bd_dom_sf       
IPR013740   Redoxin       
IPR020904   Sc_DH/Rdtase_CS       
IPR002347   SDR_fam       
IPR036249   Thioredoxin-like_sf       
IPR037944   PRX5-like       
IPR029472   Copia-like_N       
IPR007123   Gelsolin-like_dom       
IPR029006   ADF-H/Gelsolin-like_dom_sf       
IPR036180   Gelsolin-like_dom_sf       
IPR012990   Sec23_24_beta_S       

SUPFAM

SSF53098   SSF53098        + More
SSF57756   SSF57756       
SSF50630   SSF50630       
SSF51735   SSF51735       
SSF52833   SSF52833       
SSF82754   SSF82754       

Gene 3D

3.30.420.10     2.40.70.10     3.40.20.10    

CDD

cd03013  PRX5_like

ProteinModelPortal

O96968   A0A146L6N5   A0A0A9XG27   A0A0A9Z0I6   A0A146KTS1   A0A1B6DFK3   + More
A0A0A9WQU6   A0A0A9YQT1   A0A0A9WLY1   A0A0A9ZBW6   A0A146LV28   A0A0T6AT79   A0A1Y1M4K4   A0A1W7R6C3   A0A182GA29   A0A182GSW5   A0A0J7KI47   A0A0J7K6U3   A0A224XA26   A0A1Y1L115   A0A1Y1JXU0   A0A0A9WQA3   A0A2S2PNK0   A0A023F102   A0A182G1G7   A0A182H4X3   J9KJ72   A0A1B6F1U1   A0A1W7R6I5   A0A1Y1MQF0   A0A2R6RYD4   A0A0A9ZCB8   A0A182GGE6   A0A1X7U495   A0A087SVE4   A0A151RCT9   A0A0J7K689   A0A1W7R685   A0A1Y1MJE9   A0A1Y1MP14   A0A0A9W6B0   A0A151RYL1   A0A1B6FK59   A0A151THM1   A0A151S6I6   A0A151RAL1   A0A151R6U8   B8YLY5   A0A151QZS0   H6U1F0   B8YLY7   B8YLY4   A0A1W7R6A3   A0A2K3N1R3   A0A1B6C2D3   A0A068B703   Q9ZRJ0   H6U1E9   Q967L5   A0A151T355   B8YLY3   B8YLY6   A0A2R6QHR4   A0A2N9H171   A0A151R2G6   A0A151TKT1   A0A182GFZ6   A0A2N9IWX1   A0A151SDY6   A0A2K3MYT4   A0A2N9FMR2   A0A151RJN4   A0A2N9GLP2   A0A2N9EYI8   A0A2P6SP23   A0A2N9GHK3   A0A2N9ETM3   A0A2N9GY85   A0A2N9HLU0   P10978   A0A151QNH6   A0A2N9EM80   A0A2N9I6N4   A0A151SHZ9   A0A2N9FSJ8   A0A2Z6NRJ0   A0A2N9H4V1   A0A251VAZ6   A0A251V331   A0A151QNH5   A0A2N9ETC8   A0A151T469   A0A151R6T7   A0A151TMN9   A0A034W404   A0A2N9FQJ1   A0A151RBY1   A0A2N9F319   A0A2N9IUS6  

PDB

3S3N     E-value=9.79046e-08,     Score=138

KEGG

102464564    no KO assigned | (RefSeq) Mir3307, bmo-mir-3307; microRNA 3307

GO

GO:0000943   GO:0015074   GO:0008270   GO:0003676   GO:0004519   GO:0004491   GO:0003964   GO:0016491   GO:0016021   GO:0004190   GO:0005506   GO:0030145   GO:0050906   GO:0005515   GO:0016818   GO:0003707   GO:0051537  

PANTHER

PTHR11439  

Length:

890

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02191

Exp number, first 60 AAs:

0.01934

Total prob of N-in:

0.00117

outside

1  -  890

 

 

Pi

384.144368

Theta

238.766886

Tajima's D

1.826857

CLR

0

CSRT

0.856507174641268

Interpretation

Uncertain