Gene

KWMTBOMO07841

Pre Gene Modal

BGIBMGA001212

Annotation

centrin_[Bombyx_mori]

Location

Bomo_Chr13(-):8118686-8119862      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 3.447

CDS

ATGGCAACCGCGGTCGCAACAATACAGAAAAAAACTGCAACTACCAACCCTGGACCAGGTGGTGTTCGTAAGAAATCTGGACCTAAATTTGAGCTAACCGAAGAACAAAAAAGAGACATCAAAGAAGCATTTGATTTATTTGATACAGAAAATACTGGAAAAATCGACACCAAAGAACTTAAAGTGGCAATTCGAGCCCTTGGTTTCGAACCAAAAAAAGAAGAAATAAAAAAAATGATTGCAGAGATAGACAAAGGTGATGGAAAAGTATCATTTGATGACTTTATGGAACTCATGTCAGTGAAGATGGCAGAAAAAGATACCAGGGAGGAAATCATGAAAGCATTTAAACTGTTTGATGATGACGAAACTGGTAAAATTTCATTCAAAAATTTGAAGAGAGTTGCAAAGGAACTTGGTGAAAATCTCACAGATGAAGAACTGCATGAAATGATAGATGAAGCTGATAGAGATGGGGATGGTGAAATAAATCAAGAGGAATTCTTGCGTATCATGAAAAAGACTAGTCTCTATTAA

Protein

MATAVATIQKKTATTNPGPGGVRKKSGPKFELTEEQKRDIKEAFDLFDTENTGKIDTKELKVAIRALGFEPKKEEIKKMIAEIDKGDGKVSFDDFMELMSVKMAEKDTREEIMKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELHEMIDEADRDGDGEINQEEFLRIMKKTSLY

Uniprot

Q2F618   A0A2A4JTR9   A0A212ELW7   S4P7E0   A0A2H1VIK9   I4DKP8   + More
A0A194RHV6   A0A194QAH8   A0A0L7KZW2   A0A2M3ZJZ4   A0A2M4C0I5   W5JGC2   A0A2M4AXW4   A0A182VUG3   B5M0Q9   A0A182PE83   A0A182F3J8   A0A2M4C0F2   H9IVD2   A0A182U6I1   A0A182QY57   A0A182K4V4   A0A182WW33   A0A182VMX0   A0A182L6D7   A0A182HGH8   A0A182MQ98   A0A182T686   A0A182YDR1   A0A182RIP8   A0A1S4H0J1   Q7PVJ3   A0A182NU43   A0A182IY95   A0A182H2A0   Q179F4   A0A0K8TKX8   A0A084WFZ7   U4UUI5   A0A1B0C1H0   A0A1Q3FEH8   B0WFF6   N6UKA8   D2A0V1   A0A1B0CN05   A0A1B0GA75   A0A1A9UPP5   A0A1A9ZP19   T1PK64   A0A1L8DM28   A0A1Y1JWA6   E0VM15   A0A067QNL7   W4ZKD9   A0A2J7PFI5   A0A087V299   G3WRI8   A0A1A9Y571   A0A2J7PFI0   A0A1W4W857   F6WWN8   A0A1J1HTY8   G1N1G4   A0A0A0A700   A0A093NCW4   A0A087QQR1   A0A093T696   A0A091X492   A0A1W4WIG3   F1NM71   B4JBM0   B3N008   K7FX63   G1SWQ3   A0A091JWD2   A0A093GYM0   A0A3B4YHY7   A0A3B4TWQ3   A0A3B0JYP5   A0A1B6CM56   J3S8D8   T1DCW4   T1GD07   A0A1B6LAR5   A0A0B8RZB0   A0A0L8GXM8   A0A091JAB0   H3CU91   A0A091IDW2   A0A098LZR9   A0A1W4W359   A0A094KU40   A0A091NJT5   A0A2D4ML54   T1G1D6   A0A2I4B175   A0A1W7RIH0   A0A3B4X2C1   A0A3B4TX62   A0A093H2L8  

Pubmed

22118469    23622113    22651552    26354079    26227816    20920257    + More
23761445    19166301    19121390    20966253    25244985    12364791    26483478    17510324    26369729    24438588    23537049    18362917    19820115    25315136    28004739    20566863    24845553    21709235    17495919    20838655    15592404    17994087    17381049    21993624    23025625    23758969    25727380    25476704    15496914    23254933    26358130   

EMBL

DQ311254    ABD36199.1    NWSH01000642    PCG75088.1    AGBW02013971    OWR42482.1    + More
GAIX01006421    JAA86139.1    ODYU01002774    SOQ40680.1    AK401866    BAM18488.1    KQ460205    KPJ16910.1    KQ459299    KPJ02000.1    JTDY01004095    KOB68611.1    GGFM01008093    MBW28844.1    GGFJ01009643    MBW58784.1    ADMH02001595    ETN61930.1    GGFK01012318    MBW45639.1    EU930245    ACH56873.1    GGFJ01009642    MBW58783.1    BABH01000902    AXCN02000773    APCN01004235    AXCM01000998    AAAB01008984    EAA43434.4    JXUM01104930    KQ564927    KXJ71562.1    CH477353    EAT42852.1    GDAI01002790    JAI14813.1    ATLV01023415    KE525343    KFB49141.1    KB632374    ERL93831.1    JXJN01024045    GFDL01009089    JAV25956.1    DS231917    EDS26193.1    APGK01005693    APGK01005750    APGK01015356    APGK01015617    KB739627    KB739555    KB736406    KB736386    ENN82190.1    ENN82223.1    ENN83206.1    ENN83211.1    KQ971338    EFA02905.2    AJWK01019584    CCAG010019840    KA648353    AFP62982.1    GFDF01006670    JAV07414.1    GEZM01098974    JAV53599.1    DS235286    EEB14421.1    KK853132    KDR10884.1    AAGJ04046523    NEVH01025657    PNF15093.1    KL477171    KFO06741.1    AEFK01230660    AEFK01230661    PNF15091.1    CVRI01000020    CRK90836.1    KL870974    KGL89846.1    KL224695    KFW62758.1    KL225814    KFM03565.1    KL425250    KFW90109.1    KL411511    KFR08331.1    AADN05000020    CH916368    EDW02955.1    CH902638    EDV35374.1    AGCU01008173    AAGW02031682    KK531768    KFP28238.1    KL205624    KFV72230.1    OUUW01000010    SPP86193.1    GEDC01022833    JAS14465.1    JU174157    GBEX01000681    AFJ49683.1    JAI13879.1    GAAZ01000499    GBKC01000707    GBKD01000453    JAA97444.1    JAG45363.1    JAG47165.1    CAQQ02060992    GEBQ01029129    GEBQ01019242    JAT10848.1    JAT20735.1    GBSH01000642    JAG68383.1    KQ419989    KOF81806.1    KK501764    KFP17527.1    KL218474    KFP05688.1    GBSI01000528    JAC95968.1    KL354027    KFZ60847.1    KL384202    KFP89337.1    IACM01108630    IACM01108631    LAB33798.1    AMQM01002998    KB095959    ESO09582.1    GDAY02000469    JAV50944.1    KK381991    KFV48978.1   

Proteomes

UP000218220    UP000007151    UP000053240    UP000053268    UP000037510    UP000000673    + More
UP000075920    UP000075885    UP000069272    UP000005204    UP000075902    UP000075886    UP000075881    UP000076407    UP000075903    UP000075882    UP000075840    UP000075883    UP000075901    UP000076408    UP000075900    UP000007062    UP000075884    UP000075880    UP000069940    UP000249989    UP000008820    UP000030765    UP000030742    UP000092460    UP000002320    UP000019118    UP000007266    UP000092461    UP000092444    UP000078200    UP000092445    UP000095301    UP000009046    UP000027135    UP000007110    UP000235965    UP000007648    UP000092443    UP000192223    UP000002280    UP000183832    UP000001645    UP000053858    UP000054081    UP000053286    UP000053283    UP000000539    UP000001070    UP000007801    UP000007267    UP000001811    UP000053584    UP000261360    UP000261420    UP000268350    UP000015102    UP000053454    UP000053119    UP000007303    UP000054308    UP000192221    UP000015101    UP000192220   

PRIDE

Q2F618    H9IVD2   

Pfam

PF13833   EF-hand_8        + More
PF13499   EF-hand_7

Interpro

IPR011992   EF-hand-dom_pair        + More
IPR037629   Centrin_2       
IPR002048   EF_hand_dom       
IPR000629   RNA-helicase_DEAD-box_CS       
IPR018247   EF_Hand_1_Ca_BS       

SUPFAM

SSF47473   SSF47473       

CDD

cd00051  EFh

ProteinModelPortal

Q2F618   A0A2A4JTR9   A0A212ELW7   S4P7E0   A0A2H1VIK9   I4DKP8   + More
A0A194RHV6   A0A194QAH8   A0A0L7KZW2   A0A2M3ZJZ4   A0A2M4C0I5   W5JGC2   A0A2M4AXW4   A0A182VUG3   B5M0Q9   A0A182PE83   A0A182F3J8   A0A2M4C0F2   H9IVD2   A0A182U6I1   A0A182QY57   A0A182K4V4   A0A182WW33   A0A182VMX0   A0A182L6D7   A0A182HGH8   A0A182MQ98   A0A182T686   A0A182YDR1   A0A182RIP8   A0A1S4H0J1   Q7PVJ3   A0A182NU43   A0A182IY95   A0A182H2A0   Q179F4   A0A0K8TKX8   A0A084WFZ7   U4UUI5   A0A1B0C1H0   A0A1Q3FEH8   B0WFF6   N6UKA8   D2A0V1   A0A1B0CN05   A0A1B0GA75   A0A1A9UPP5   A0A1A9ZP19   T1PK64   A0A1L8DM28   A0A1Y1JWA6   E0VM15   A0A067QNL7   W4ZKD9   A0A2J7PFI5   A0A087V299   G3WRI8   A0A1A9Y571   A0A2J7PFI0   A0A1W4W857   F6WWN8   A0A1J1HTY8   G1N1G4   A0A0A0A700   A0A093NCW4   A0A087QQR1   A0A093T696   A0A091X492   A0A1W4WIG3   F1NM71   B4JBM0   B3N008   K7FX63   G1SWQ3   A0A091JWD2   A0A093GYM0   A0A3B4YHY7   A0A3B4TWQ3   A0A3B0JYP5   A0A1B6CM56   J3S8D8   T1DCW4   T1GD07   A0A1B6LAR5   A0A0B8RZB0   A0A0L8GXM8   A0A091JAB0   H3CU91   A0A091IDW2   A0A098LZR9   A0A1W4W359   A0A094KU40   A0A091NJT5   A0A2D4ML54   T1G1D6   A0A2I4B175   A0A1W7RIH0   A0A3B4X2C1   A0A3B4TX62   A0A093H2L8  

PDB

5D43     E-value=2.17776e-43,     Score=437

KEGG

692867    K16465 centrin-1 | (RefSeq) centrin

GO

GO:0005509   GO:0005813   GO:0007099   GO:0000278   GO:0005814   GO:0032440   GO:0006289   GO:0000922   GO:0032391   GO:0031683   GO:0008017   GO:0032795   GO:0034605   GO:0022027   GO:0005623   GO:0060271   GO:0000226   GO:0009052   GO:0043565   GO:0005506   GO:0030145   GO:0050906   GO:0005515   GO:0016818   GO:0003707   GO:0051537  

PANTHER

PTHR23050:SF305  

Length:

178

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.43880

outside

1  -  178

 

 

Pi

240.099508

Theta

199.331758

Tajima's D

0.488769

CLR

0

CSRT

0.506924653767312

Interpretation

Uncertain