Silkworm Genome Informatics Database

Gene

KWMTBOMO07831

Pre Gene Modal

BGIBMGA000933

Annotation

PREDICTED:_paired_box_protein_Pax-6-like_[Amyelois_transitella]

Location

Bomo_Chr13(+):7701411-7745914 View in EpiBrowser

Transcription factor

PAX

Location in the cell

Nuclear Reliability : 4.435

CDS

ATGTTGATATCGGCGGGCAGTGGCCCCACGCCCGAGTTTTCCCCCGTCTCGTGCTGCGCGTCCTGGAAAATGGAATCAGCGCCTCCTGCGCCCGCGGCAATCACACAACCTTTGAACATATCCACTAATGTACCAGTATCTCCGTCATCATCGACGGGAGGTGCCGGCGGCGGATCCGGGACCCCTCTCTACCCTGGCGCAGCGTCTCATCCCCTGTCTTCATTACTGTCACAGCAACGGCTTCTAGAGCTTTCCAGATTCGGCTTAAGGCATTATGATATCGCCCACCATGTTTTGTCTCAACAAGGTGCTGTCACGAAGTTGCTTGGTACATTACGGCCGCCGGGTCTTATAGGAGGTAGCAAGCCGAAAGTTGCTACACCCGCTGTAGTATCCAAGATTGAGCAGTACAAACGAGAAAACCCCACAATATTCGCATGGGAAATACGCGAACGGCTTATATCTGAAGGTGTTTGCACAAACGCAACGGCGCCGAGCGTCTCGTCAATTAACAGAATACTAAGGAACCGGGCGGCCGAACGAGCTGCCGCTGAATTCGCCAGGGCAGCGGGCTATGGGCTTTACGCTGCCCCACCTCCGTATGGAGCATTTCCGTGGGCTGGTGGCGGAGGTGTGTGGCCTCCTGGGACTTTGTCACTTCCACCCGGAGTTCCAGGACCACCAACCGGAGTACCGCACCCCGACGTTGTACAACAAGGATATTTGTCATCAGGACGAGGACTTATAGATGTGGACGGAGACGATTCGGGGTCCCTTGATGGTGAACAGCCAAAGTTTAGGAGAAATCGTACGACTTTCAGTCAAGACCAATTAGAAGAGCTGGAAAAAGAGTTCGAAAAGTCACATTATCCTTGCGTTTCAACGCGAGAACGACTGGCTTCGAAAACGTCGTTATCGGAAGCACGGGTTCAGGTTTGGTTTTCCAACAGACGAGCAAAGTGGAGGCGCCACCAGCGCATGAACCTCCTGAAGCGCGGTGGCGGCTCCTCCCCCCGCCACCCCGCCCGCTCTCCTTCGCGCTCCCCTTCTCGTTCTCTGTCCCCTCCGCGCGGACCCTTCCCCCCGCAGATGGGCGGCGAGAACAGCGCATTCAAAGCGCTCTCGCATCAAGATACAAACGCTCTCAAGGCACTGTCACATCAAACGCAATTCGATAGTAACGCGCTGAAAGCATTGTCGCAACAGTCCGCCTTCGACGGCACGTTCAAGCCTCATCCCGCGTTGGAAAGCAGCGCGTTCAAAGCGCTTGTACCGCACTCGGCAGCCGCCGCACTCTTGGCGGCACAATCCATACAATTAGCTCGGGGATACGAATCTCATTCCGACTCAGATGAAGAGATAAATGTACACGATGAAAGCGATGACGAAGGTGGCAAGAATAAGAGTTTAACTAGATCTCCGAGTCCGAATCGACATCGACCGCCAGTCTCTAACGATATACCTCTACAGCTCACTAAGCATGATCGCTAA

Protein

MLISAGSGPTPEFSPVSCCASWKMESAPPAPAAITQPLNISTNVPVSPSSSTGGAGGGSGTPLYPGAASHPLSSLLSQQRLLELSRFGLRHYDIAHHVLSQQGAVTKLLGTLRPPGLIGGSKPKVATPAVVSKIEQYKRENPTIFAWEIRERLISEGVCTNATAPSVSSINRILRNRAAERAAAEFARAAGYGLYAAPPPYGAFPWAGGGGVWPPGTLSLPPGVPGPPTGVPHPDVVQQGYLSSGRGLIDVDGDDSGSLDGEQPKFRRNRTTFSQDQLEELEKEFEKSHYPCVSTRERLASKTSLSEARVQVWFSNRRAKWRRHQRMNLLKRGGGSSPRHPARSPSRSPSRSLSPPRGPFPPQMGGENSAFKALSHQDTNALKALSHQTQFDSNALKALSQQSAFDGTFKPHPALESSAFKALVPHSAAAALLAAQSIQLARGYESHSDSDEEINVHDESDDEGGKNKSLTRSPSPNRHRPPVSNDIPLQLTKHDR

Uniprot

A0A194RHI8 A0A194QAI2

Pubmed

26354079

EMBL

KQ460205 KPJ16904.1 KQ459299 KPJ02005.1

Proteomes

UP000053240 UP000053268

Pfam

PF00046 Homeodomain + More
PF00292 PAX

Interpro

IPR001523   Paired_dom        + More
IPR009057   Homeobox-like_sf
IPR036388   WH-like_DNA-bd_sf
IPR017970   Homeobox_CS
IPR001356   Homeobox_dom

SUPFAM

SSF46689 SSF46689

Gene 3D

1.10.10.10

CDD

cd00086 homeodomain

ProteinModelPortal

A0A194RHI8 A0A194QAI2

PDB

2K27 E-value=8.70938e-24, Score=274

KEGG

101744226 no KO assigned | (RefSeq) paired box protein Pax-3-A-like

GO

GO:0007275 GO:0005634 GO:0006355 GO:0043565 GO:0003677 GO:0005506 GO:0030145 GO:0050906 GO:0005515 GO:0016818 GO:0003707 GO:0051537

Subcellular location

Nucleus

Length:

496

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01655

Exp number, first 60 AAs:

6e-05

Total prob of N-in:

0.00118

outside

1 - 496

Pi

219.552254

Theta

168.932572

Tajima's D

0.967973

CLR

0.586667

CSRT

0.649667516624169

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics