Gene

KWMTBOMO07828  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA000931

Annotation

PREDICTED:_CCR4-NOT_transcription_complex_subunit_7-like_isoform_X2_[Amyelois_transitella]

Location

Bomo_Chr13(+):7561553-7569867      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 2.036 Nuclear   Reliability : 1.596

CDS

ATGGATGAAAATGGAAAGACACCACCTGGTTATACAACTTGGCAATTCAACTTTAAATTCAATCTACAAGAAGATATGTATGCGCAAGACTCTATAGACCTATTACAAAACTCAGGTCTACAGTTCAGAAAACATGAAGAAGATGGTATAGAGCCATTGGAATTCGCTGAACTCCTTATGTCTTCAGGTCTTGTACTCATTGACAACATAAAGTGGCTTAGTTTCCACTCTGGATATGACTTTGGCTATTTATTAAAATTGCTAACAGATCAGAACCTACCGCAAGATGAGAATGACTTTTTTGAGAGTCTTCGACTGTATTTTCCAACTGTTTACGATGTTAAATATTTGATGAAGCTGTGCAAGAATTTAAAGGGTGGATTGCAAGAAGTTGCTGACCAGCTGGAGTTGCGTCGAGTGGGACCTCAGCATCAAGCTGGTTCTGATTCACACCTAACTGGAATGGCTTTTTTCAAAATCAAAAAGATATTTTTTGACGACAATATTGAAAGTTCAAGTGGGCATTTATACGGTCTTGGTGCACCGTTTTCAGTGAATGTCAATAACTTCCAAGACAATGGCGAAAACGGAAATTCCTCTTGA

Protein

MDENGKTPPGYTTWQFNFKFNLQEDMYAQDSIDLLQNSGLQFRKHEEDGIEPLEFAELLMSSGLVLIDNIKWLSFHSGYDFGYLLKLLTDQNLPQDENDFFESLRLYFPTVYDVKYLMKLCKNLKGGLQEVADQLELRRVGPQHQAGSDSHLTGMAFFKIKKIFFDDNIESSSGHLYGLGAPFSVNVNNFQDNGENGNSS

Uniprot

H9IUK1   A0A1E1W6H0   A0A2A4J6P5   A0A2H1VS46   A0A212EZJ3   A0A1E1WI84   + More
A0A2A4J6V5   A0A2H1WY06   I4DR32   A0A194PEZ7   A0A194Q6F0   I4DKN7   A0A2A4J5J6   I4DRB7   A0A212EZJ4   A0A194QVX4   A0A1B0CUL9   S4PL71   A0A1B6KQM6   A0A1E1WQK5   A0A1B6HZF3   A0A1B6GM18   A0A194RHU6   A0A1L8DGV1   A0A1L8DGU4   A0A1L8DGR3   A0A3B0JPQ5   A0A3B0K245   W8ASK5   A0A1B6BXZ8   A0A1B6EAQ6   B4H1W5   Q29EE0   A0A3B0JUS5   W8B455   A0A034W2B8   A0A0K8WAS3   A0A0K8TV29   A0A034W6F8   A0A0P9AKQ5   B3MAG0   A0A0K8UNG5   N6UQE1   A0A0M4ENG0   T1P857   A0A1I8PU18   A0A067RBB7   A0A1I8PU50   A0A0Q9XR26   A0A0Q9WM05   B4L164   A0A1I8N2Q5   A0A1I8PU32   A0A1I8N2Q9   B4MLI7   A0A1W4W603   D3TP58   A0A1A9XGF6   A0A1A9ZKN2   B4LC30   B4PG79   B3NH50   A0A0R1E1Z7   A0A0Q5UJ14   A0A1B0C4U7   A0A1B0FKN8   A0A1A9UFV3   B4IXY9   J3JV26   A0A1A9WSM9   H9IVD7   A0A336K9F1   Q8I0I5   A0A0L0BZQ3   Q9VTS4   U4UD40   A0A336KBA5   A0A0J9RU39   Q8IGD6   A0A0J9RTR8   A0A0K8TQV2   A0A0P4VJX9   A0A023F5F6   A0A069DSE9   A0A224XJ77   E9GSH9   Q16VZ2   A0A182GKR0   A0A1W4W7P3   Q16VZ3   A0A0A9XML1   A0A0P5DRQ8   D2A3D8   A0A0P5D477   A0A0P4ZMF7   N6TZD1   A0A0P5W4P6   A0A0P5UK57   A0A0T6B7Y0   A0A0P5YXG4  

Pubmed

19121390    22118469    22651552    26354079    23622113    24495485    + More
17994087    15632085    25348373    23537049    25315136    24845553    18057021    20353571    17550304    22516182    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    26108605    22936249    26369729    27129103    25474469    26334808    21292972    17510324    26483478    25401762    18362917    19820115   

EMBL

BABH01000938    BABH01000939    BABH01000940    BABH01000941    GDQN01008478    JAT82576.1    + More
NWSH01002871    PCG67406.1    ODYU01004110    SOQ43640.1    AGBW02011268    OWR46919.1    GDQN01004386    JAT86668.1    PCG67408.1    ODYU01011861    SOQ57846.1    AK404915    BAM20372.1    KQ459606    KPI91274.1    KQ459463    KPJ00580.1    AK401855    BAM18477.1    PCG67407.1    AK405054    BAM20457.1    OWR46918.1    KQ461108    KPJ09115.1    AJWK01029371    AJWK01029372    GAIX01004205    JAA88355.1    GEBQ01031228    GEBQ01026231    GEBQ01002950    GEBQ01001848    JAT08749.1    JAT13746.1    JAT37027.1    JAT38129.1    GDQN01001796    JAT89258.1    GECU01027649    JAS80057.1    GECZ01009579    GECZ01006280    JAS60190.1    JAS63489.1    KQ460205    KPJ16900.1    GFDF01008510    JAV05574.1    GFDF01008412    JAV05672.1    GFDF01008463    JAV05621.1    OUUW01000002    SPP77460.1    SPP77458.1    GAMC01014706    GAMC01014705    JAB91850.1    GEDC01031162    JAS06136.1    GEDC01002305    JAS34993.1    CH479203    EDW30317.1    CH379070    EAL30121.3    SPP77459.1    GAMC01014707    JAB91848.1    GAKP01009261    JAC49691.1    GDHF01033152    GDHF01007000    GDHF01004083    GDHF01000922    JAI19162.1    JAI45314.1    JAI48231.1    JAI51392.1    GDHF01033992    JAI18322.1    GAKP01009262    JAC49690.1    CH902618    KPU78448.1    EDV40211.2    GDHF01024419    JAI27895.1    APGK01008166    KB737621    ENN82986.1    CP012525    ALC43480.1    KA644841    AFP59470.1    KK852756    KDR17086.1    CH933809    KRG06567.1    KRG06568.1    CH940647    KRF85158.1    EDW19246.2    CH963847    EDW72843.2    EZ423210    ADD19486.1    EDW70858.1    CM000159    EDW94243.1    CH954178    EDV51507.1    KRK01713.1    KQS43824.1    JXJN01025657    CCAG010006132    CH916366    EDV97532.1    BT127092    AEE62054.1    BABH01000943    UFQS01000195    UFQT01000195    SSX01121.1    SSX21501.1    AE014296    BT001837    AAN12248.1    AAN12249.1    AAN71594.1    JRES01001098    KNC25525.1    AY047553    AAF49972.2    AAK77285.1    KB632266    ERL90972.1    SSX01122.1    SSX21502.1    CM002912    KMY99133.1    KMY99137.1    BT001830    AAN71585.1    KMY99138.1    GDAI01000861    JAI16742.1    GDKW01001261    JAI55334.1    GBBI01002339    JAC16373.1    GBGD01002297    JAC86592.1    GFTR01005322    JAW11104.1    GL732562    EFX77573.1    CH477579    EAT38721.1    JXUM01070467    JXUM01070468    JXUM01070469    JXUM01070470    EAT38720.1    GBHO01022420    GBRD01007318    JAG21184.1    JAG58503.1    GDIP01151605    JAJ71797.1    KQ971338    EFA02299.1    GDIP01161400    JAJ62002.1    GDIP01210596    JAJ12806.1    APGK01049129    KB741142    ENN73721.1    GDIP01091162    JAM12553.1    GDIP01129197    JAL74517.1    LJIG01009261    KRT83433.1    GDIP01051920    JAM51795.1   

Proteomes

UP000005204    UP000218220    UP000007151    UP000053268    UP000053240    UP000092461    + More
UP000268350    UP000008744    UP000001819    UP000007801    UP000019118    UP000092553    UP000095301    UP000095300    UP000027135    UP000009192    UP000008792    UP000007798    UP000192221    UP000092443    UP000092445    UP000002282    UP000008711    UP000092460    UP000092444    UP000078200    UP000001070    UP000091820    UP000000803    UP000037069    UP000030742    UP000000305    UP000008820    UP000069940    UP000192223    UP000007266   

PRIDE

H9IUK1    H9IVD7    Q8I0I5    Q9VTS4    Q8IGD6   

Pfam

PF04857   CAF1

Interpro

IPR036397   RNaseH_sf        + More
IPR006941   RNase_CAF1       
IPR039637   CNOT7/CNOT8/Pop2       
IPR012337   RNaseH-like_sf       

SUPFAM

SSF53098   SSF53098       

Gene 3D

3.30.420.10    

ProteinModelPortal

H9IUK1   A0A1E1W6H0   A0A2A4J6P5   A0A2H1VS46   A0A212EZJ3   A0A1E1WI84   + More
A0A2A4J6V5   A0A2H1WY06   I4DR32   A0A194PEZ7   A0A194Q6F0   I4DKN7   A0A2A4J5J6   I4DRB7   A0A212EZJ4   A0A194QVX4   A0A1B0CUL9   S4PL71   A0A1B6KQM6   A0A1E1WQK5   A0A1B6HZF3   A0A1B6GM18   A0A194RHU6   A0A1L8DGV1   A0A1L8DGU4   A0A1L8DGR3   A0A3B0JPQ5   A0A3B0K245   W8ASK5   A0A1B6BXZ8   A0A1B6EAQ6   B4H1W5   Q29EE0   A0A3B0JUS5   W8B455   A0A034W2B8   A0A0K8WAS3   A0A0K8TV29   A0A034W6F8   A0A0P9AKQ5   B3MAG0   A0A0K8UNG5   N6UQE1   A0A0M4ENG0   T1P857   A0A1I8PU18   A0A067RBB7   A0A1I8PU50   A0A0Q9XR26   A0A0Q9WM05   B4L164   A0A1I8N2Q5   A0A1I8PU32   A0A1I8N2Q9   B4MLI7   A0A1W4W603   D3TP58   A0A1A9XGF6   A0A1A9ZKN2   B4LC30   B4PG79   B3NH50   A0A0R1E1Z7   A0A0Q5UJ14   A0A1B0C4U7   A0A1B0FKN8   A0A1A9UFV3   B4IXY9   J3JV26   A0A1A9WSM9   H9IVD7   A0A336K9F1   Q8I0I5   A0A0L0BZQ3   Q9VTS4   U4UD40   A0A336KBA5   A0A0J9RU39   Q8IGD6   A0A0J9RTR8   A0A0K8TQV2   A0A0P4VJX9   A0A023F5F6   A0A069DSE9   A0A224XJ77   E9GSH9   Q16VZ2   A0A182GKR0   A0A1W4W7P3   Q16VZ3   A0A0A9XML1   A0A0P5DRQ8   D2A3D8   A0A0P5D477   A0A0P4ZMF7   N6TZD1   A0A0P5W4P6   A0A0P5UK57   A0A0T6B7Y0   A0A0P5YXG4  

PDB

4GMJ     E-value=6.03166e-71,     Score=676

KEGG

101744510    K12581 CCR4-NOT transcription complex subunit 7/8 | (RefSeq) CCR4-NOT transcription complex subunit

PATHWAY

03018    RNA degradation - Bombyx mori (domestic silkworm)

GO

GO:0030014   GO:0003676   GO:0004535   GO:0016021   GO:0000289   GO:0017148   GO:0005737   GO:0005829   GO:0006402   GO:0043928   GO:0030015   GO:0000932   GO:0005524   GO:0005634   GO:0006338   GO:0016818   GO:0003707   GO:0051537  

PANTHER

PTHR10797  

Length:

200

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01173

Exp number, first 60 AAs:

0.00195

Total prob of N-in:

0.05033

outside

1  -  200

 

 

Pi

205.294204

Theta

180.951916

Tajima's D

0.447499

CLR

0.618687

CSRT

0.504824758762062

Interpretation

Uncertain