Gene

KWMTBOMO07826  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA000931

Annotation

PREDICTED:_CCR4-NOT_transcription_complex_subunit_7-like_[Amyelois_transitella]

Location

Bomo_Chr13(-):7544562-7548822      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.891 Nuclear   Reliability : 1.375

CDS

ATGAAACAAAAAAGGTGCCCATCAGGAGAAAAGATGCCGGCGACCAGTTTCACCTCTTTACTGTGCAGTGCATTAAAAGAAGAGTGCAGTATTAAAAACGTTTGGAATCATAATCTTCATGAAGAATTTCATGTAATAAGACAGGTTGTCCAGAAATACCATTGGGTGGCCATGGATACTGAATTTCCAGGTGTAGTTGCAAGACCAATTGGTGAATTCAGATCCACTGCAGATTATCAATACCAGCTTTTAAGATGCAATGTGGATCTGTTGCGGATCATACAATTAGGATTAACGTTTATGGACGAAAATGCTAAAACTCCCCCAGGGTGCACAACTTGGCAGTTTAATTTTAAATTCAATCTTCAGGAGGATATGTATGCACAAGACTCGATAGACTTACTACAAAATTCTGGTCTGCAATTCAGGGAACATGAAGAACATGGTATTGAACCCCTTGAATTTGCTGAATTACTAATGTCATCTGGAATTGTACTAATGGATAACATCAACTGGTTGAGTTTTCATTCTGGATATGATTTTGGTTATTTACTTAAGTTGCTTACTGATCAAAACCTACCTCATGAAGAGAATGACTTCTTTGAACGATTGCGTCTATATTTCCCCACCGTGTATGATGTCAAGTACCTGATGAAACTTTGCAAGAATCTTAAAGGTGGCTTACAAGAAGTTGCAGATCAGTTGGAATTGAGGCGAGTAGGTCCCCAACATCAAGCCGGTTCTGACTCACTACTGACTGGCATGGCGTTTTTTAAAATTAAAGAAATATTTTTTGATGGAAACATTGAAAGTACGAGTGGACATCTGTACGGACTTGGAGCTCCATTCACTACTAACGCCAACAACTTCCAGGATAACGTGGATAGTGGAAACTCATCTTGA

Protein

MKQKRCPSGEKMPATSFTSLLCSALKEECSIKNVWNHNLHEEFHVIRQVVQKYHWVAMDTEFPGVVARPIGEFRSTADYQYQLLRCNVDLLRIIQLGLTFMDENAKTPPGCTTWQFNFKFNLQEDMYAQDSIDLLQNSGLQFREHEEHGIEPLEFAELLMSSGIVLMDNINWLSFHSGYDFGYLLKLLTDQNLPHEENDFFERLRLYFPTVYDVKYLMKLCKNLKGGLQEVADQLELRRVGPQHQAGSDSLLTGMAFFKIKEIFFDGNIESTSGHLYGLGAPFTTNANNFQDNVDSGNSS

Uniprot

A0A1E1WI84   A0A2A4J6V5   A0A2H1WY06   A0A194PEZ7   I4DR32   A0A2A4J6P5   + More
A0A1E1W6H0   A0A2H1VS46   H9IUK1   A0A212EZJ3   A0A194RHU6   A0A212EZJ4   A0A194Q6F0   I4DKN7   I4DRB7   A0A194QVX4   S4PL71   A0A067RBB7   A0A1B0CUL9   A0A1B6KQM6   A0A1L8DGU4   A0A1L8DGV1   A0A1B6HZF3   A0A1B6GM18   A0A1L8DGR3   A0A336K9F1   A0A1B6BXZ8   A0A336KBA5   A0A0M4ENG0   A0A0Q9XR26   A0A1B6EAQ6   B4L164   A0A0K8TQV2   A0A0Q9WM05   W8ASK5   A0A3B0JPQ5   A0A0P9AKQ5   B4LC30   A0A3B0K245   B3MAG0   W8B455   B4H1W5   A0A034W2B8   A0A0K8WAS3   Q29EE0   A0A0K8TV29   A0A034W6F8   A0A0K8UNG5   A0A0R1E1Z7   A0A0Q5UJ14   B4MLI7   A0A3B0JUS5   B4PG79   B3NH50   Q16VZ2   A0A1W4W603   Q16VZ3   B4IXY9   A0A182GKR0   A0A224XJ77   U4UD40   A0A0P4VJX9   A0A023F5F6   A0A069DSE9   A0A1W4W7P3   J3JV26   A0A084WI87   Q8I0I5   A0A1I8PU18   A0A1I8PU50   V5GRD5   T1P857   Q9VTS4   A0A0L0BZQ3   A0A0A9XQT1   A0A023ES05   A0A1I8N2Q5   A0A1I8PU32   A0A1I8N2Q9   A0A1Y1LSN9   A0A0T6B7Y0   A0A0J9RU39   A0A1I8JT44   Q8IGD6   A0A0A9XKD7   A0A182WR57   A0A182LPR2   Q7Q2Z8   D2A3D8   A0A0J9RTR8   A0A1B0C4U7   A0A0P5W4P6   A0A2P8XSW5   D3TP58   A0A1A9XGF6   A0A1A9ZKN2   A0A1B0FKN8   A0A1A9UFV3   A0A1A9WSM9   A0A0A9XNI8  

Pubmed

26354079    22651552    19121390    22118469    23622113    24845553    + More
17994087    18057021    26369729    24495485    25348373    15632085    17550304    17510324    26483478    23537049    27129103    25474469    26334808    22516182    24438588    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    25315136    26108605    25401762    24945155    28004739    22936249    26823975    20966253    12364791    14747013    17210077    18362917    19820115    29403074    20353571   

EMBL

GDQN01004386    JAT86668.1    NWSH01002871    PCG67408.1    ODYU01011861    SOQ57846.1    + More
KQ459606    KPI91274.1    AK404915    BAM20372.1    PCG67406.1    GDQN01008478    JAT82576.1    ODYU01004110    SOQ43640.1    BABH01000938    BABH01000939    BABH01000940    BABH01000941    AGBW02011268    OWR46919.1    KQ460205    KPJ16900.1    OWR46918.1    KQ459463    KPJ00580.1    AK401855    BAM18477.1    AK405054    BAM20457.1    KQ461108    KPJ09115.1    GAIX01004205    JAA88355.1    KK852756    KDR17086.1    AJWK01029371    AJWK01029372    GEBQ01031228    GEBQ01026231    GEBQ01002950    GEBQ01001848    JAT08749.1    JAT13746.1    JAT37027.1    JAT38129.1    GFDF01008412    JAV05672.1    GFDF01008510    JAV05574.1    GECU01027649    JAS80057.1    GECZ01009579    GECZ01006280    JAS60190.1    JAS63489.1    GFDF01008463    JAV05621.1    UFQS01000195    UFQT01000195    SSX01121.1    SSX21501.1    GEDC01031162    JAS06136.1    SSX01122.1    SSX21502.1    CP012525    ALC43480.1    CH933809    KRG06567.1    KRG06568.1    GEDC01002305    JAS34993.1    EDW19246.2    GDAI01000861    JAI16742.1    CH940647    KRF85158.1    GAMC01014706    GAMC01014705    JAB91850.1    OUUW01000002    SPP77460.1    CH902618    KPU78448.1    EDW70858.1    SPP77458.1    EDV40211.2    GAMC01014707    JAB91848.1    CH479203    EDW30317.1    GAKP01009261    JAC49691.1    GDHF01033152    GDHF01007000    GDHF01004083    GDHF01000922    JAI19162.1    JAI45314.1    JAI48231.1    JAI51392.1    CH379070    EAL30121.3    GDHF01033992    JAI18322.1    GAKP01009262    JAC49690.1    GDHF01024419    JAI27895.1    CM000159    KRK01713.1    CH954178    KQS43824.1    CH963847    EDW72843.2    SPP77459.1    EDW94243.1    EDV51507.1    CH477579    EAT38721.1    EAT38720.1    CH916366    EDV97532.1    JXUM01070467    JXUM01070468    JXUM01070469    JXUM01070470    GFTR01005322    JAW11104.1    KB632266    ERL90972.1    GDKW01001261    JAI55334.1    GBBI01002339    JAC16373.1    GBGD01002297    JAC86592.1    BT127092    AEE62054.1    ATLV01023923    KE525347    KFB49931.1    AE014296    BT001837    AAN12248.1    AAN12249.1    AAN71594.1    GALX01005643    JAB62823.1    KA644841    AFP59470.1    AY047553    AAF49972.2    AAK77285.1    JRES01001098    KNC25525.1    GBHO01022421    JAG21183.1    GAPW01001595    JAC12003.1    GEZM01047870    GEZM01047869    JAV76714.1    LJIG01009261    KRT83433.1    CM002912    KMY99133.1    KMY99137.1    APCN01001962    BT001830    AAN71585.1    GBHO01022427    GDHC01001711    JAG21177.1    JAQ16918.1    AAAB01008966    EAA12934.4    KQ971338    EFA02299.1    KMY99138.1    JXJN01025657    GDIP01091162    JAM12553.1    PYGN01001401    PSN35098.1    EZ423210    ADD19486.1    CCAG010006132    GBHO01022418    JAG21186.1   

Proteomes

UP000218220    UP000053268    UP000005204    UP000007151    UP000053240    UP000027135    + More
UP000092461    UP000092553    UP000009192    UP000008792    UP000268350    UP000007801    UP000008744    UP000001819    UP000002282    UP000008711    UP000007798    UP000008820    UP000192221    UP000001070    UP000069940    UP000030742    UP000192223    UP000030765    UP000000803    UP000095300    UP000095301    UP000037069    UP000075840    UP000076407    UP000075882    UP000007062    UP000007266    UP000092460    UP000245037    UP000092443    UP000092445    UP000092444    UP000078200    UP000091820   

PRIDE

H9IUK1    Q8I0I5    Q9VTS4    Q8IGD6   

Pfam

PF04857   CAF1

Interpro

IPR036397   RNaseH_sf        + More
IPR006941   RNase_CAF1       
IPR012337   RNaseH-like_sf       
IPR039637   CNOT7/CNOT8/Pop2       

SUPFAM

SSF53098   SSF53098       

Gene 3D

3.30.420.10    

ProteinModelPortal

A0A1E1WI84   A0A2A4J6V5   A0A2H1WY06   A0A194PEZ7   I4DR32   A0A2A4J6P5   + More
A0A1E1W6H0   A0A2H1VS46   H9IUK1   A0A212EZJ3   A0A194RHU6   A0A212EZJ4   A0A194Q6F0   I4DKN7   I4DRB7   A0A194QVX4   S4PL71   A0A067RBB7   A0A1B0CUL9   A0A1B6KQM6   A0A1L8DGU4   A0A1L8DGV1   A0A1B6HZF3   A0A1B6GM18   A0A1L8DGR3   A0A336K9F1   A0A1B6BXZ8   A0A336KBA5   A0A0M4ENG0   A0A0Q9XR26   A0A1B6EAQ6   B4L164   A0A0K8TQV2   A0A0Q9WM05   W8ASK5   A0A3B0JPQ5   A0A0P9AKQ5   B4LC30   A0A3B0K245   B3MAG0   W8B455   B4H1W5   A0A034W2B8   A0A0K8WAS3   Q29EE0   A0A0K8TV29   A0A034W6F8   A0A0K8UNG5   A0A0R1E1Z7   A0A0Q5UJ14   B4MLI7   A0A3B0JUS5   B4PG79   B3NH50   Q16VZ2   A0A1W4W603   Q16VZ3   B4IXY9   A0A182GKR0   A0A224XJ77   U4UD40   A0A0P4VJX9   A0A023F5F6   A0A069DSE9   A0A1W4W7P3   J3JV26   A0A084WI87   Q8I0I5   A0A1I8PU18   A0A1I8PU50   V5GRD5   T1P857   Q9VTS4   A0A0L0BZQ3   A0A0A9XQT1   A0A023ES05   A0A1I8N2Q5   A0A1I8PU32   A0A1I8N2Q9   A0A1Y1LSN9   A0A0T6B7Y0   A0A0J9RU39   A0A1I8JT44   Q8IGD6   A0A0A9XKD7   A0A182WR57   A0A182LPR2   Q7Q2Z8   D2A3D8   A0A0J9RTR8   A0A1B0C4U7   A0A0P5W4P6   A0A2P8XSW5   D3TP58   A0A1A9XGF6   A0A1A9ZKN2   A0A1B0FKN8   A0A1A9UFV3   A0A1A9WSM9   A0A0A9XNI8  

PDB

4GMJ     E-value=5.24992e-110,     Score=1015

KEGG

101744656    K12581 CCR4-NOT transcription complex subunit 7/8 | (RefSeq) CCR4-NOT transcription complex subunit

PATHWAY

03018    RNA degradation - Bombyx mori (domestic silkworm)

GO

GO:0030014   GO:0003676   GO:0004535   GO:0016021   GO:0000289   GO:0017148   GO:0005737   GO:0005829   GO:0006402   GO:0043928   GO:0030015   GO:0000932   GO:0005524   GO:0005634   GO:0006338   GO:0016818   GO:0003707   GO:0051537  

PANTHER

PTHR10797  

Length:

300

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01344

Exp number, first 60 AAs:

0.00029

Total prob of N-in:

0.07038

outside

1  -  300

 

 

Pi

267.114304

Theta

208.750235

Tajima's D

0.88264

CLR

0

CSRT

0.635718214089296

Interpretation

Uncertain