Gene

KWMTBOMO07818

Pre Gene Modal

BGIBMGA000925

Annotation

Ssu72_RNA_polymerase_II_CTD_phosphatase_[Bombyx_mori]

Location

Bomo_Chr13(+):7424143-7426797      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.767 Nuclear   Reliability : 2.259

CDS

ATGAGTGATTTATACGTTGCGGTTGTGTGTTCCTCTAATATGAATCGTAGCATGGAAGCTCACGCGTTTCTCGTAAAAAAGGGTTTTAATGTGAAATCTTATGGAACTGGCGAAAAAGTCAAACTACCTGGAGCCTCGGCAGATAGGCCTAATTGTTACGAATTTGGTGTTTTATACGATGAGATTTACAATGATCTTATGGAAAAAGACAAAAATTACTACACTCAAAATGGACTGTTACATATGTTAGACAGGAATAGAAGAATAAAGCCTTGTCCAGAAAAATTTCAGGTGTGTAATGAAAGATTTGATGTCATAATAACTTGTGAAGAAAGAGTATATGATCAAGTAATTGAATGGTTTGGCTCTAGAAGGTCAATCTATAATCAACCTGTTCACGTAGTAAACATTGACATCCAGGATAATCACGAAGAAGCAACGATTGGTGCATTTTTAATAAGTGATATGGTAACAAAAATGGCTCAAAGCGATGATTTGGACAATGATATAGATGAATTACTACACGAGTTTGAATCAAAGTGCCACAGACCTATTTTGAACTGTATAATGTTTTATTGA

Protein

MSDLYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDEIYNDLMEKDKNYYTQNGLLHMLDRNRRIKPCPEKFQVCNERFDVIITCEERVYDQVIEWFGSRRSIYNQPVHVVNIDIQDNHEEATIGAFLISDMVTKMAQSDDLDNDIDELLHEFESKCHRPILNCIMFY

Uniprot

Q1HPU4   B9VTS4   H9IUJ5   A0A3S2N728   A0A2A4IZS4   A0A212EMC4   + More
A0A0L7LJB7   A0A194RLM6   A0A194PEY3   A0A2H1VLL9   A0A0L7KL79   A0A182IRQ3   A0A084WBD3   B0XK05   A0A182JPA7   A0A182U2G9   A0A182YPE7   A0A182XUU8   A0A1Q3FBG2   A0A182UQV1   Q7Q339   A0A182IIM1   A0A1Q3FBA4   A0A182R8P4   A0A182MXZ3   A0A182P9B8   A0A182MNT7   A0A182WQU0   A0A023EL95   Q177U5   A0A1B0D7Y2   A0A336M6A4   U5EKV3   A0A1B0CFH8   A0A2J7PJH5   A0A182QHT0   E0W1I3   A0A1L8DGL7   A0A067R6M8   A0A1L8DGW3   A0A310S5Q1   A0A026WE62   A0A182FPN5   E2C7C7   A0A2A3EU85   A0A087ZP89   E2AQ08   A0A154P772   A0A151WFE7   A0A0M8ZWM7   A0A0P4WEK9   A0A2M4AVI7   A0A2M4C0A8   W5JQG5   T1DGP3   A0A151IGD9   A0A195DCG0   F4WM61   S4PK05   A0A2M4C0E4   A0A2M3ZAT7   A0A195FU68   A0A158P3G4   A0A069DP41   A0A224XYA2   A0A0V0G748   A0A023F9B0   A0A0L7RCE4   A0A1B6KR27   A0A1B6H3F6   A0A0T6AWI0   A0A0P4VSJ8   R4FPS1   A0A1B0G0Y4   A0A1A9XJT4   A0A1A9UHT8   A0A1B0B778   A0A1B0AIZ1   A0A2S2R9A6   A0A1B6H5U3   A0A2S2PFF1   A0A2P8ZBQ4   A0A0K8U539   A0A034VZB7   W8C7E0   A0A0L0CRC1   A0A1Y1KKB4   A0A2H8TX56   D6WNM1   J9JXC9   E9FS49   A0A0P6BPK4   A0A0P5FJI8   T1J4B9   A0A1I8M2B2   A0A1E1XSR4   A0A131XDL6   A0A1E1WZW7   A0A1I8P7Z3   A0A1B6C5G5  

Pubmed

19121390    22118469    26227816    26354079    24438588    25244985    + More
12364791    14747013    17210077    24945155    17510324    20566863    24845553    24508170    30249741    20798317    20920257    23761445    21719571    23622113    21347285    26334808    25474469    27129103    29403074    25348373    24495485    26108605    28004739    18362917    19820115    21292972    25315136    29209593    28049606    28503490   

EMBL

DQ443308    ABF51397.1    FJ602784    ACM24350.1    BABH01000953    RSAL01000276    + More
RVE43111.1    NWSH01004427    PCG65129.1    AGBW02013857    OWR42642.1    JTDY01000893    KOB75525.1    KQ460205    KPJ16886.1    KQ459606    KPI91259.1    ODYU01003229    SOQ41711.1    JTDY01009129    KOB64072.1    ATLV01022344    KE525331    KFB47527.1    DS233664    EDS31036.1    GFDL01010134    JAV24911.1    AAAB01008966    EAA13083.3    APCN01001937    GFDL01010189    JAV24856.1    AXCM01000254    GAPW01004589    JAC09009.1    CH477371    EAT42423.1    AJVK01033328    UFQT01000611    SSX25735.1    GANO01001667    JAB58204.1    AJWK01010106    NEVH01024949    PNF16468.1    AXCN02001648    DS235870    EEB19489.1    GFDF01008485    JAV05599.1    KK852665    KDR18964.1    GFDF01008484    JAV05600.1    KQ769179    OAD52904.1    KK107293    QOIP01000005    EZA53319.1    RLU22946.1    GL453369    EFN76114.1    KZ288186    PBC34766.1    GL441645    EFN64495.1    KQ434829    KZC07727.1    KQ983219    KYQ46546.1    KQ435847    KOX71123.1    GDRN01039586    JAI67189.1    GGFK01011488    MBW44809.1    GGFJ01009581    MBW58722.1    ADMH02000409    ETN66657.1    GAMD01002696    JAA98894.1    KQ977726    KYN00305.1    KQ980989    KYN10576.1    GL888217    EGI64705.1    GAIX01004740    JAA87820.1    GGFJ01009583    MBW58724.1    GGFM01004906    MBW25657.1    KQ981264    KYN44003.1    ADTU01001327    GBGD01003056    JAC85833.1    GFTR01003233    JAW13193.1    GECL01002204    JAP03920.1    GBBI01000625    JAC18087.1    KQ414616    KOC68470.1    GEBQ01026090    JAT13887.1    GECZ01000563    JAS69206.1    LJIG01022637    KRT79507.1    GDKW01001037    JAI55558.1    ACPB03001069    GAHY01000739    JAA76771.1    CCAG010005507    CCAG010005508    JXJN01009413    GGMS01017057    MBY86260.1    GECU01037645    JAS70061.1    GGMR01015516    MBY28135.1    PYGN01000114    PSN53933.1    GDHF01030814    GDHF01015636    JAI21500.1    JAI36678.1    GAKP01011198    JAC47754.1    GAMC01000612    JAC05944.1    JRES01000127    KNC33974.1    GEZM01081145    JAV61849.1    GFXV01007032    MBW18837.1    KQ971342    EFA03763.1    ABLF02037246    GL732523    EFX90378.1    GDIP01013483    JAM90232.1    GDIQ01256127    JAJ95597.1    JH431842    GFAA01001308    JAU02127.1    GEFH01004336    JAP64245.1    GFAC01006852    JAT92336.1    GEDC01028555    JAS08743.1   

Proteomes

UP000005204    UP000283053    UP000218220    UP000007151    UP000037510    UP000053240    + More
UP000053268    UP000075880    UP000030765    UP000002320    UP000075881    UP000075902    UP000076408    UP000076407    UP000075903    UP000007062    UP000075840    UP000075900    UP000075884    UP000075885    UP000075883    UP000075920    UP000008820    UP000092462    UP000092461    UP000235965    UP000075886    UP000009046    UP000027135    UP000053097    UP000279307    UP000069272    UP000008237    UP000242457    UP000005203    UP000000311    UP000076502    UP000075809    UP000053105    UP000000673    UP000078542    UP000078492    UP000007755    UP000078541    UP000005205    UP000053825    UP000015103    UP000092444    UP000092443    UP000078200    UP000092460    UP000092445    UP000245037    UP000037069    UP000007266    UP000007819    UP000000305    UP000095301    UP000095300   

PRIDE

Q1HPU4    B9VTS4    H9IUJ5   

Pfam

PF04722   Ssu72

Interpro

IPR006811   RNA_pol_II_suA        + More
IPR036196   Ptyr_pPase_sf       

SUPFAM

SSF52788   SSF52788       

ProteinModelPortal

Q1HPU4   B9VTS4   H9IUJ5   A0A3S2N728   A0A2A4IZS4   A0A212EMC4   + More
A0A0L7LJB7   A0A194RLM6   A0A194PEY3   A0A2H1VLL9   A0A0L7KL79   A0A182IRQ3   A0A084WBD3   B0XK05   A0A182JPA7   A0A182U2G9   A0A182YPE7   A0A182XUU8   A0A1Q3FBG2   A0A182UQV1   Q7Q339   A0A182IIM1   A0A1Q3FBA4   A0A182R8P4   A0A182MXZ3   A0A182P9B8   A0A182MNT7   A0A182WQU0   A0A023EL95   Q177U5   A0A1B0D7Y2   A0A336M6A4   U5EKV3   A0A1B0CFH8   A0A2J7PJH5   A0A182QHT0   E0W1I3   A0A1L8DGL7   A0A067R6M8   A0A1L8DGW3   A0A310S5Q1   A0A026WE62   A0A182FPN5   E2C7C7   A0A2A3EU85   A0A087ZP89   E2AQ08   A0A154P772   A0A151WFE7   A0A0M8ZWM7   A0A0P4WEK9   A0A2M4AVI7   A0A2M4C0A8   W5JQG5   T1DGP3   A0A151IGD9   A0A195DCG0   F4WM61   S4PK05   A0A2M4C0E4   A0A2M3ZAT7   A0A195FU68   A0A158P3G4   A0A069DP41   A0A224XYA2   A0A0V0G748   A0A023F9B0   A0A0L7RCE4   A0A1B6KR27   A0A1B6H3F6   A0A0T6AWI0   A0A0P4VSJ8   R4FPS1   A0A1B0G0Y4   A0A1A9XJT4   A0A1A9UHT8   A0A1B0B778   A0A1B0AIZ1   A0A2S2R9A6   A0A1B6H5U3   A0A2S2PFF1   A0A2P8ZBQ4   A0A0K8U539   A0A034VZB7   W8C7E0   A0A0L0CRC1   A0A1Y1KKB4   A0A2H8TX56   D6WNM1   J9JXC9   E9FS49   A0A0P6BPK4   A0A0P5FJI8   T1J4B9   A0A1I8M2B2   A0A1E1XSR4   A0A131XDL6   A0A1E1WZW7   A0A1I8P7Z3   A0A1B6C5G5  

PDB

3FMV     E-value=1.72444e-68,     Score=654

KEGG

732981    K15544 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16] | (RefSeq) Ssu7

PATHWAY

03015    mRNA surveillance pathway - Bombyx mori (domestic silkworm)

GO

GO:0004721   GO:0005634   GO:0006397   GO:0005847   GO:0070940   GO:0006369   GO:0006378   GO:0008420   GO:0016021   GO:0004817   GO:0006423   GO:0022891   GO:0003707   GO:0051537  

PANTHER

PTHR20383  

Length:

192

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00276

Exp number, first 60 AAs:

0.00276

Total prob of N-in:

0.09623

outside

1  -  192

 

 

Pi

247.401066

Theta

204.707754

Tajima's D

0.730292

CLR

0.199134

CSRT

0.577021148942553

Interpretation

Uncertain