Gene

KWMTBOMO07814  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA000923

Annotation

PREDICTED:_cytochrome_b-c1_complex_subunit_8_[Plutella_xylostella]

Location

Bomo_Chr13(+):7386353-7391239      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 2.271

CDS

ATGGGCAAACACTTTGGAGAACTAGCTAAAATTCGGGGTCTTGTCACCTACAAGATATCTGCCCATGAACAACGAGCATATGCTGGAGCTATTTCAAATGGTATTCCTAATATCTTCAGAAGATTTCGTGAGAGCGTTTTTAAAGTAGTCCCGCCCTTCATCATTGGATACTTGATATATGAAGGAGTTGAAAGGGAGCATCACAGACTATCACGGAAGAACCCTGCTGATTTTGAAAATGATCAATAA

Protein

MGKHFGELAKIRGLVTYKISAHEQRAYAGAISNGIPNIFRRFRESVFKVVPPFIIGYLIYEGVEREHHRLSRKNPADFENDQ

Similarity

Belongs to the ligand-gated ion channel (TC 1.A.9) family.

Uniprot

H9IUJ3   A0A2H1VN79   A0A3S2LBK1   A0A0L7K3R0   A0A212EME6   I4DJF7   + More
A0A194RHH4   S4NXC4   A0A1B0DCH8   A0A1B0FBL5   A0A1A9UJ68   A0A1I8QF14   A0A1I8MSA3   A0A3B0K1X4   A0A0M4ECF8   B4N6F4   A0A1B0A6K2   A0A1L8EF75   A0A1L8E0W6   Q2LZI3   A0A2J7Q503   B4H6N0   A0A0L0BV84   A0A1W4W4I6   A0A1L8EHX6   U5EWU3   B4IX18   B3M4I9   B4HKT0   B4QNV5   Q9VVH5   B4PJU9   B3NHU8   B4LFR8   B4KXE7   Q1W286   A0A1B6MB62   A0A1J1HWE0   A0A336LYN2   D1FQ43   A0A1W4X507   B5M0W3   A0A2M3Z047   A0A2M4A6B9   W5JLZ0   A0A2C9JTQ1   A0A224ZB31   A0A131Z597   A0A293LYV3   A0A093IPX6   A0A1L8E9I8   A0A2M4A802   D2A1S3   A0A087UF51   A0A2P6L8V1   C9W1P3   J9HFH0   A0A182G7Z1   Q7QDP2   A0A182R929   A0A3F2Z216   A0A1S4H4M9   A0A0P5TBY9   A0A084VJW1   A0A182IKK3   A0A182QGQ1   A0A094KVC3   A0A091KRL1   Q6Q9G3   K4G6V8   A0A023GEA3   A0A226E260   T1DJW3   A0A2I0T386   A0A091LNX2   A0A1B0AY58   B0WZV5   A0A182FZS5   Q09JK0   A0A0C9RZW0   Q4PM49   A0A147BVR0   B7PRC5   A0A1D2MD05   A0A3S1AQU9   A0A091FLJ2   A0A0P4YPP2   A0A091Q0X4   A0A1V4KTY2   A0A023FG99   A0A023FES7   W4ZFW5   A0A182HIW0   A0A1Q3FLY5   A0A3Q3LFP9   A0A091T0U1   A0A091S8P1   E9FT85   A0A0B7B1F4   A0A2I0LT61  

Pubmed

19121390    26227816    22118469    22651552    26354079    23622113    + More
25315136    17994087    18057021    15632085    26108605    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    17550304    19166301    20920257    23761445    15562597    28797301    26830274    18362917    19820115    20650005    24029695    17510324    26483478    12364791    24438588    23056606    24330624    18070664    26131772    16431279    29652888    27289101    21292972    23371554   

EMBL

BABH01000961    BABH01000962    ODYU01003229    SOQ41714.1    RSAL01000276    RVE43109.1    + More
JTDY01011558    KOB55595.1    AGBW02013857    OWR42646.1    AK401425    KQ459606    BAM18047.1    KPI91262.1    KQ460205    KPJ16889.1    GAIX01009109    JAA83451.1    AJVK01005095    CCAG010008960    OUUW01000012    SPP87323.1    CP012525    ALC43096.1    CH964154    EDW79943.1    KRF99194.1    KRF99195.1    GFDG01001475    JAV17324.1    GFDF01001780    JAV12304.1    CH379069    EAL29524.1    NEVH01018372    PNF23663.1    CH479214    EDW33458.1    JRES01001279    KNC23975.1    GFDG01000573    JAV18226.1    GANO01001264    JAB58607.1    CH916366    EDV96324.1    CH902618    EDV40483.1    KPU78585.1    CH480815    EDW41885.1    CM000363    CM002912    EDX10857.1    KMZ00237.1    AE014296    AY113252    KX531481    AAF49336.1    AAM29257.1    ADV37560.1    ADV37561.1    AGB94680.1    ANY27291.1    CM000159    EDW94718.1    KRK02013.1    CH954178    EDV51963.1    CH940647    EDW69295.1    CH933809    EDW18633.1    DQ445541    ABD98779.1    GEBQ01006807    JAT33170.1    CVRI01000021    CRK91676.1    UFQT01000309    SSX23092.1    EZ419943    ACZ28298.1    EU930299    ACH56927.1    GGFM01001151    MBW21902.1    GGFK01002941    MBW36262.1    ADMH02000671    ETN65382.1    GFPF01013038    MAA24184.1    GEDV01002622    JAP85935.1    GFWV01008935    MAA33664.1    KL216278    KFV68746.1    GFDG01003401    JAV15398.1    GGFK01003541    MBW36862.1    KQ971338    EFA02862.1    KK119549    KFM75990.1    MWRG01000923    PRD34985.1    EZ406195    ACX53990.1    CH477328    EJY57567.1    JXUM01047141    KQ561507    KXJ78355.1    AAAB01008849    EAA07167.2    GDIP01204056    GDIP01134264    GDIQ01072326    JAL69450.1    JAN22411.1    ATLV01013905    KE524908    KFB38255.1    AXCN02002267    KL356584    KFZ62570.1    KK539336    KFP30409.1    AY552057    AAS79343.1    JX052744    JX209397    AFK10972.1    AFM87711.1    GBBM01003216    GBBM01003215    JAC32202.1    LNIX01000007    OXA51835.1    GALA01000021    JAA94831.1    KZ521456    PKU28270.1    KK504388    KFP60836.1    JXJN01005553    JXJN01005554    JXJN01005555    DS232218    EDS37780.1    DQ886846    ABI52763.1    GBZX01002931    JAG89809.1    DQ066278    AAY66915.1    GEGO01000561    JAR94843.1    ABJB010815611    DS771975    EEC09147.1    LJIJ01001766    ODM90855.1    RQTK01001663    RUS69499.1    KL447125    KFO70034.1    GDIP01224605    JAI98796.1    KK653539    KFQ03319.1    LSYS01001584    OPJ87904.1    GBBK01004478    JAC20004.1    GBBK01004480    JAC20002.1    AAGJ04042127    APCN01006664    APCN01006665    GFDL01006549    JAV28496.1    KK939647    KFQ49714.1    KK812809    KFQ36810.1    GL732524    EFX89330.1    HACG01039271    CEK86136.1    AKCR02000104    PKK20618.1   

Proteomes

UP000005204    UP000283053    UP000037510    UP000007151    UP000053268    UP000053240    + More
UP000092462    UP000092444    UP000078200    UP000095300    UP000095301    UP000268350    UP000092553    UP000007798    UP000092445    UP000001819    UP000235965    UP000008744    UP000037069    UP000192221    UP000001070    UP000007801    UP000001292    UP000000304    UP000000803    UP000002282    UP000008711    UP000008792    UP000009192    UP000183832    UP000192223    UP000000673    UP000076420    UP000053875    UP000007266    UP000054359    UP000008820    UP000069940    UP000249989    UP000007062    UP000075900    UP000076407    UP000030765    UP000075880    UP000075886    UP000198287    UP000092460    UP000002320    UP000069272    UP000001555    UP000094527    UP000271974    UP000053760    UP000190648    UP000007110    UP000075840    UP000261640    UP000000305    UP000053872   

PRIDE

H9IUJ3    Q9VVH5   

Pfam

PF02939   UcrQ        + More
PF02932   Neur_chan_memb
PF02931   Neur_chan_LBD
PF03133   TTL

Interpro

IPR036642   Cyt_bc1_su8_sf        + More
IPR004205   Cyt_bc1_su8       
IPR006201   Neur_channel       
IPR036719   Neuro-gated_channel_TM_sf       
IPR006029   Neurotrans-gated_channel_TM       
IPR006028   GABAA/Glycine_rcpt       
IPR036734   Neur_chan_lig-bd_sf       
IPR018000   Neurotransmitter_ion_chnl_CS       
IPR006202   Neur_chan_lig-bd       
IPR013815   ATP_grasp_subdomain_1       
IPR004344   TTL/TTLL_fam       
IPR027750   TTLL1       

SUPFAM

SSF81508   SSF81508        + More
SSF90112   SSF90112       
SSF63712   SSF63712       

Gene 3D

1.20.5.210     2.70.170.10     3.30.1490.20    

ProteinModelPortal

H9IUJ3   A0A2H1VN79   A0A3S2LBK1   A0A0L7K3R0   A0A212EME6   I4DJF7   + More
A0A194RHH4   S4NXC4   A0A1B0DCH8   A0A1B0FBL5   A0A1A9UJ68   A0A1I8QF14   A0A1I8MSA3   A0A3B0K1X4   A0A0M4ECF8   B4N6F4   A0A1B0A6K2   A0A1L8EF75   A0A1L8E0W6   Q2LZI3   A0A2J7Q503   B4H6N0   A0A0L0BV84   A0A1W4W4I6   A0A1L8EHX6   U5EWU3   B4IX18   B3M4I9   B4HKT0   B4QNV5   Q9VVH5   B4PJU9   B3NHU8   B4LFR8   B4KXE7   Q1W286   A0A1B6MB62   A0A1J1HWE0   A0A336LYN2   D1FQ43   A0A1W4X507   B5M0W3   A0A2M3Z047   A0A2M4A6B9   W5JLZ0   A0A2C9JTQ1   A0A224ZB31   A0A131Z597   A0A293LYV3   A0A093IPX6   A0A1L8E9I8   A0A2M4A802   D2A1S3   A0A087UF51   A0A2P6L8V1   C9W1P3   J9HFH0   A0A182G7Z1   Q7QDP2   A0A182R929   A0A3F2Z216   A0A1S4H4M9   A0A0P5TBY9   A0A084VJW1   A0A182IKK3   A0A182QGQ1   A0A094KVC3   A0A091KRL1   Q6Q9G3   K4G6V8   A0A023GEA3   A0A226E260   T1DJW3   A0A2I0T386   A0A091LNX2   A0A1B0AY58   B0WZV5   A0A182FZS5   Q09JK0   A0A0C9RZW0   Q4PM49   A0A147BVR0   B7PRC5   A0A1D2MD05   A0A3S1AQU9   A0A091FLJ2   A0A0P4YPP2   A0A091Q0X4   A0A1V4KTY2   A0A023FG99   A0A023FES7   W4ZFW5   A0A182HIW0   A0A1Q3FLY5   A0A3Q3LFP9   A0A091T0U1   A0A091S8P1   E9FT85   A0A0B7B1F4   A0A2I0LT61  

PDB

4U3F     E-value=7.75371e-20,     Score=232

KEGG

101745824    K00418 ubiquinol-cytochrome c reductase subunit 8 | (RefSeq) cytochrome b-c1 complex subunit 8-like

PATHWAY

00190    Oxidative phosphorylation - Bombyx mori (domestic silkworm)
01100    Metabolic pathways - Bombyx mori (domestic silkworm)

GO

GO:0008121   GO:0005230   GO:0005886   GO:0004888   GO:0016021   GO:0048039   GO:0005750   GO:0006122   GO:0018095   GO:0005524   GO:0005215   GO:0009081   GO:0004817   GO:0006423   GO:0022891   GO:0003707   GO:0051537  

PANTHER

PTHR12119   PTHR18945   PTHR12241:SF31  

Length:

82

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.01264

Exp number, first 60 AAs:

0.854

Total prob of N-in:

0.18329

outside

1  -  82

 

 

Pi

123.954316

Theta

120.036819

Tajima's D

0

CLR

0.825383

CSRT

0.358982050897455

Interpretation

Uncertain