Gene

KWMTBOMO07809

Pre Gene Modal

BGIBMGA000920

Annotation

PREDICTED:_delta-sarcoglycan-like_[Bombyx_mori]

Location

Bomo_Chr13(+):7333073-7338696      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 1.083 Mitochondrial   Reliability : 1.523 PlasmaMembrane   Reliability : 1.267

CDS

ATGAGCGTAGCGGATACCAGTAATAATGCTATCCGAGGATGGGGTAGTACGCCAACAGGAAATGCTCCTACTGTAAACGTGGGCAATGAAAATCGAACAAACCACAAATGCCTCCCGGCAATATTCTTTAGAGGCTGGAGAAGGAACCTTCTTTATGGAATACTAATATTCCTCATGATTTTAGTATTTCTAAACATTGCATTAACTTTGTGGATCATAAGCGCATTGAAACTTAATATGAATGGCATCGGTCCCATAAAAATTATGAACGGCGGGATTCAGCTCCAAGGTCAAACGTGGGTTGTGAACAATTTAGTTGCGTCGACAATATCAACACAACCCGCTCATCCTATCACGCTACACTCTCACCGCAACTTCACCGTACTCGTATCCGACCCTAAACATTCAGAACATTCCAAGTTGTTAATTAAGCGGGACAACATTGAATTTAGTGGTAAAATGTTTCACGTGCGTGATTCTCGCGGAGGTGACGTCTTTCGTGCTTCTAAAGAAGAAGTAAGAGTGTATGCTGACACATTTGCAGTGGACGGCATCGGTGGTTTAGTAGTAAAAACTGCACTTCAGGTGCCTCTTGTACGGGCCCCTCCTGGATCTGACTTACAATTGGAATCTTTGACGAGGGGGTTAGATTTGAGAGCGCCTCAGTCGATTTACTTCGAAAGCAGAGCCGGGAAAATTGATGTAACCTCGCACACTGATCTGAAACTCAACTCTATAGTAGGCGCTATCAAAATTGATGCCCCAAATATTGTGATTACGAATTTGAAAGAAGCACATGTAACAGAAAAACCGCAAAGAGGTATAAGAAGTATGAAAGTTTATCAATTGTGCGCATGCGCAACTGGAAAACTATTCTTAGCAGCACCGGATGCGGTATGCGCTGCGAATGCTGACGACACCGAATTGTGCCGATGA

Protein

MSVADTSNNAIRGWGSTPTGNAPTVNVGNENRTNHKCLPAIFFRGWRRNLLYGILIFLMILVFLNIALTLWIISALKLNMNGIGPIKIMNGGIQLQGQTWVVNNLVASTISTQPAHPITLHSHRNFTVLVSDPKHSEHSKLLIKRDNIEFSGKMFHVRDSRGGDVFRASKEEVRVYADTFAVDGIGGLVVKTALQVPLVRAPPGSDLQLESLTRGLDLRAPQSIYFESRAGKIDVTSHTDLKLNSIVGAIKIDAPNIVITNLKEAHVTEKPQRGIRSMKVYQLCACATGKLFLAAPDAVCAANADDTELCR

Uniprot

H9IUJ0   A0A2A4JEI8   A0A194PE01   A0A194RHS5   A0A212EMD3   A0A2H1V7B0   + More
A0A0L7LSN0   B0XJN9   E9HAK5   A0A194RHG4   A0A1L8E5F9   A0A182VVP4   A0A182PKX1   A0A3S2TDT4   A0A182XER6   A0A182HIP2   A0A182V7D4   A0A0P6JZZ8   A0A182Q3J7   A0A182RZ34   A0A1L8E5D7   H9IVE4   N6TR09   N6TUN7   A0A2A4IUV5   A0A212EMB7   A0A336MWC4   A0A2J7Q101   A0A336LCK3   A0A194PD49   E2C091   A0A067R3F3   A0A2H1V8S0   A0A182IZG3   Q7QEN3   A0A1W7R920   A0A182MER8   A0A0P6AB81   A0A0A9X6V5   A0A0K8SBJ4   A0A026W1R6   A0A0L7QMM1   A0A154P8M7   A0A1J1IIC1   A0A088ALA6   A0A084VJ08   U4UFT1   N6UMJ5   B4GTI4   Q29J24   A0A023F0F5   A0A3B0KJR1   A0A1B0DEM4   A0A0A1WDX2   A0A034VT16   W8B695   A0A151I3V0   A0A182UF70   A0A1D2N2P5   A0A1Y1LEB4   A0A1I8NEH9   A0A087T563   A0A2P8YTJ9   Q16EP8   A0A151WYC4   B4PY54   B4MGX9   A0A139WJ89   B3P9L3   B3MYM0   O76892   A0A023ENJ0   A0A0C9R9I4   Q178M3   B4L778   A0A1A9WCH3   A0A1A9UZQ8   A0A182HEH8   A0A1B6M271   A0A2S2N6Z9   B4NEE8   J9K4M2   A0A0L0CP83   A0A0C9QMS5   A0A0C9PTZ8   A0A1W4VFZ2   Q6TGT8   A0A1I8NX46   A0A182N024   A0A0R4IBS6   A0A3B3HE20   A0A3B3I4T5   A0A226E8B2   A0A182FJE2   A0A1B0AHU2  

Pubmed

19121390    26354079    22118469    26227816    21292972    23537049    + More
20798317    24845553    12364791    25401762    24508170    24438588    17994087    15632085    25474469    25830018    25348373    24495485    27289101    28004739    25315136    29403074    17510324    17550304    18362917    19820115    18057021    11018515    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    24945155    26483478    26108605    15520368    23594743    17554307   

EMBL

BABH01000969    NWSH01001710    PCG70371.1    KQ459606    KPI91253.1    KQ460205    + More
KPJ16880.1    AGBW02013857    OWR42637.1    ODYU01001039    SOQ36697.1    JTDY01000166    KOB78483.1    DS233570    EDS30558.1    GL732612    EFX71196.1    KPJ16879.1    GFDF01000146    JAV13938.1    RSAL01000276    RVE43105.1    APCN01004029    APCN01004030    APCN01004031    GDIQ01001237    LRGB01000248    JAN93500.1    KZS20050.1    AXCN02001221    GFDF01000342    JAV13742.1    BABH01000977    APGK01008818    APGK01008819    KB737790    ENN82924.1    APGK01017892    APGK01017893    KB740057    ENN81788.1    NWSH01006006    PCG63757.1    OWR42634.1    UFQT01002640    SSX33831.1    NEVH01019960    PNF22270.1    UFQS01002721    UFQT01002721    SSX14591.1    SSX33989.1    KPI91251.1    GL451753    EFN78643.1    KK852782    KDR16618.1    ODYU01001018    SOQ36654.1    AAAB01008846    EAA06160.5    GEHC01000004    JAV47641.1    AXCM01009022    GDIP01031960    JAM71755.1    GBHO01044142    GBHO01027147    GBHO01027146    GBHO01017072    GBHO01017071    GBHO01017069    GBRD01015155    GBRD01015153    JAF99461.1    JAG16457.1    JAG16458.1    JAG26532.1    JAG26533.1    JAG26535.1    JAG50671.1    GBRD01015154    JAG50672.1    KK107488    EZA50010.1    KQ414889    KOC59809.1    KQ434827    KZC07480.1    CVRI01000054    CRK99971.1    ATLV01013422    KE524855    KFB37952.1    KB632278    ERL91228.1    APGK01008440    APGK01008441    APGK01008812    APGK01008813    KB737789    KB737692    ENN82925.1    ENN82960.1    CH479190    EDW25854.1    CH379063    EAL32478.2    GBBI01003775    JAC14937.1    OUUW01000016    SPP88810.1    AJVK01005661    GBXI01017622    JAC96669.1    GAKP01013977    JAC44975.1    GAMC01012433    JAB94122.1    KQ976463    KYM84598.1    LJIJ01000275    ODM99510.1    GEZM01060161    JAV71231.1    KK113457    KFM60252.1    PYGN01000367    PSN47579.1    CH478624    EAT32707.1    KQ982656    KYQ52701.1    CM000162    EDX00927.1    CH940757    EDW71529.1    KQ971338    KYB27911.1    CH954183    EDV45509.1    KQS25987.1    CH902632    EDV32714.1    AE014298    AF277393    BT064640    AL030994    AAF45663.1    AAG17402.1    ACN29337.1    ACZ95176.2    ACZ95177.1    ACZ95178.1    CAA19736.1    GAPW01003624    JAC09974.1    GBYB01004795    GBYB01004796    JAG74562.1    JAG74563.1    CH477361    EAT42667.1    CH933812    EDW06224.2    JXUM01035407    KQ561058    KXJ79834.1    GEBQ01009965    JAT30012.1    GGMR01000362    MBY12981.1    CH964239    EDW82117.2    ABLF02030426    ABLF02030429    JRES01000125    KNC33987.1    GBYB01004794    JAG74561.1    GBYB01004793    JAG74560.1    BX294656    CR388143    CR855271    BC095349    BC164654    AY398418    AAH95349.1    AAI64654.1    AAQ97851.1    LNIX01000006    OXA53247.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000053240    UP000007151    UP000037510    + More
UP000002320    UP000000305    UP000075920    UP000075885    UP000283053    UP000076407    UP000075840    UP000075903    UP000076858    UP000075886    UP000075900    UP000019118    UP000235965    UP000008237    UP000027135    UP000075880    UP000007062    UP000075883    UP000053097    UP000053825    UP000076502    UP000183832    UP000005203    UP000030765    UP000030742    UP000008744    UP000001819    UP000268350    UP000092462    UP000078540    UP000075902    UP000094527    UP000095301    UP000054359    UP000245037    UP000008820    UP000075809    UP000002282    UP000008792    UP000007266    UP000008711    UP000007801    UP000000803    UP000009192    UP000091820    UP000078200    UP000069940    UP000249989    UP000007798    UP000007819    UP000037069    UP000192221    UP000000437    UP000095300    UP000075884    UP000001038    UP000198287    UP000069272    UP000092445   

PRIDE

H9IUJ0    H9IVE4    O76892   

Pfam

PF04790   Sarcoglycan_1

Interpro

IPR006875   Sarcoglycan        + More
IPR039972   Sarcoglycan_gamma/delta/zeta       
IPR027661   SGCD       

ProteinModelPortal

H9IUJ0   A0A2A4JEI8   A0A194PE01   A0A194RHS5   A0A212EMD3   A0A2H1V7B0   + More
A0A0L7LSN0   B0XJN9   E9HAK5   A0A194RHG4   A0A1L8E5F9   A0A182VVP4   A0A182PKX1   A0A3S2TDT4   A0A182XER6   A0A182HIP2   A0A182V7D4   A0A0P6JZZ8   A0A182Q3J7   A0A182RZ34   A0A1L8E5D7   H9IVE4   N6TR09   N6TUN7   A0A2A4IUV5   A0A212EMB7   A0A336MWC4   A0A2J7Q101   A0A336LCK3   A0A194PD49   E2C091   A0A067R3F3   A0A2H1V8S0   A0A182IZG3   Q7QEN3   A0A1W7R920   A0A182MER8   A0A0P6AB81   A0A0A9X6V5   A0A0K8SBJ4   A0A026W1R6   A0A0L7QMM1   A0A154P8M7   A0A1J1IIC1   A0A088ALA6   A0A084VJ08   U4UFT1   N6UMJ5   B4GTI4   Q29J24   A0A023F0F5   A0A3B0KJR1   A0A1B0DEM4   A0A0A1WDX2   A0A034VT16   W8B695   A0A151I3V0   A0A182UF70   A0A1D2N2P5   A0A1Y1LEB4   A0A1I8NEH9   A0A087T563   A0A2P8YTJ9   Q16EP8   A0A151WYC4   B4PY54   B4MGX9   A0A139WJ89   B3P9L3   B3MYM0   O76892   A0A023ENJ0   A0A0C9R9I4   Q178M3   B4L778   A0A1A9WCH3   A0A1A9UZQ8   A0A182HEH8   A0A1B6M271   A0A2S2N6Z9   B4NEE8   J9K4M2   A0A0L0CP83   A0A0C9QMS5   A0A0C9PTZ8   A0A1W4VFZ2   Q6TGT8   A0A1I8NX46   A0A182N024   A0A0R4IBS6   A0A3B3HE20   A0A3B3I4T5   A0A226E8B2   A0A182FJE2   A0A1B0AHU2  

KEGG

101736935    no KO assigned | (RefSeq) delta-sarcoglycan-like

GO

GO:0016021   GO:0016012   GO:0048738   GO:0042383   GO:0060047   GO:0043034   GO:0045214   GO:0007498   GO:0008307   GO:0007016   GO:0007525   GO:0048798   GO:0007368   GO:0005215   GO:0009081   GO:0004817   GO:0006423   GO:0022891   GO:0003707   GO:0051537  

PANTHER

PTHR12939   PTHR12939:SF6  

Length:

311

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

23.12998

Exp number, first 60 AAs:

10.31398

Total prob of N-in:

0.98007

POSSIBLE N-term signal

sequence

inside

1  -  50

TMhelix

51  -  73

outside

74  -  311

 

 

Pi

239.242155

Theta

189.819488

Tajima's D

0.840321

CLR

0.404586

CSRT

0.616619169041548

Interpretation

Uncertain