Gene

KWMTBOMO07808

Pre Gene Modal

BGIBMGA001224

Annotation

PREDICTED:_delta-sarcoglycan-like_[Amyelois_transitella]

Location

Bomo_Chr13(-):7237608-7240932      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 1.286 PlasmaMembrane   Reliability : 1.939

CDS

ATGTGTGTGTGGGGTGTGAAACAGCAGAACGGCGGTATCGACGACCTGAGGATACCGTACGCCGACAAGATCACCCCGGAGCCAATCTTGCACAACAATGCGGGCAGGGACACAAAGCCAGACTCGATCAGAAACAGTTATAATAGCCAATTCAAAGTTGGCATCTACGGTTGGAGGAAGAAATGCCTGTATATACTTGTCATTGCGCTTATGTTTATGATGATCATTAATCTAGCTCTCACGCTTTGGGTTCTCAAAGTTTTGGATTTTAATTCGGAAGGAATGGGTCAGCTCAGAATAGTTCCTGGAGGATTGCAGCTACTCGGGCAAGCATTAGTACTCGATTCTCTATTTACATCAAGTATCAAATCTCGGAGAGGTCAACCGATTTCCATCGAATCTACCAGAAACTTCTCAGTGTCAACTCGAGATGCACAGGGATTACTGCAAAGTAGATTATTCTTAGGTCATGACCGTTTAGAACTCAACGTTGGTCGCTTTGAAGTGAGAGATTCAAGAGGAGCGTTGCTACTGGGAGCCGGTCAAGATTCCGTCACCATAGGAGCGGATACACTAACGGTTTCCAGTTCAGCTGGAGTGACACTGAATACCGCAGTCCAGACTTCACTTGTAAAGGCACCCCCAGCGAAACCATTAGTGCTGGAGTCTCCTACAAGATCATTAGAAATGCATGCAGCCCAAAACATAGCTTTGGAGTCAAGAGCTGGCGACATAAGTGCGAGCTGCCTCACAACCTTCAGACTGAGATCCATAGCCGGATCGATACGTTTAGACGCACCTAGTATTTACATGCCGAAATTGAAATCGGCTCTACCATTGCCACCATCAGCACAGCACCCGCACGATCCCCATCACCAGAACATTTATCAGTTGTGTGCATGTGCAAACGGGAAACTATTCCTAGCACCACCGCATGGGATCTGCGCGGCCAGGGAGGAGAGCCTCATCTGTCGATGA

Protein

MCVWGVKQQNGGIDDLRIPYADKITPEPILHNNAGRDTKPDSIRNSYNSQFKVGIYGWRKKCLYILVIALMFMMIINLALTLWVLKVLDFNSEGMGQLRIVPGGLQLLGQALVLDSLFTSSIKSRRGQPISIESTRNFSVSTRDAQGLLQSRLFLGHDRLELNVGRFEVRDSRGALLLGAGQDSVTIGADTLTVSSSAGVTLNTAVQTSLVKAPPAKPLVLESPTRSLEMHAAQNIALESRAGDISASCLTTFRLRSIAGSIRLDAPSIYMPKLKSALPLPPSAQHPHDPHHQNIYQLCACANGKLFLAPPHGICAAREESLICR

Uniprot

H9IVE4   A0A3S2TDT4   A0A2A4IUV5   A0A2H1V8S0   A0A194RHG4   A0A212EMB7   + More
A0A194PD49   A0A0L7LSP2   A0A2J7Q101   B0XJN9   A0A067R3F3   A0A182VVP4   A0A182IZG3   A0A1L8E5F9   A0A1L8E5D7   A0A182XER6   A0A182HIP2   A0A1W7R920   A0A182RZ34   A0A182V7D4   A0A182PKX1   A0A182Q3J7   A0A139WJ89   A0A182MER8   A0A336MWC4   A0A084VJ08   A0A336LCK3   A0A0A1WDX2   Q7QEN3   A0A034VT16   A0A1Y1LEB4   A0A3B0KJR1   N6TUN7   B4GTI4   W8B695   Q29J24   B4PY54   B3P9L3   A0A0L7QMM1   O76892   E2C091   A0A1I8NEH9   B4NEE8   B4JLW6   A0A1W4VFZ2   A0A0L0CP83   N6TR09   A0A154P8M7   B4MGX9   A0A1A9UZQ8   A0A026W1R6   B3MYM0   A0A1A9YI61   A0A1B0AHU2   A0A088ALA6   B4L778   A0A1A9WCH3   A0A1B0B2C5   A0A2P8YTJ9   A0A087T563   A0A1B0GEF9   C0P8L9   E9HAK5   A0A0M4F878   A0A1D2N2P5   A0A1I8NX46   A0A023ENJ0   U4UFT1   N6UMJ5   A0A0P6JZZ8   A0A151I3V0   A0A226E8B2   A0A023F0F5   A0A182HEH8   A0A0K8SBJ4   Q178M3   A0A0C9R9I4   A0A151WYC4   Q16EP8   A0A0A9X6V5   A0A182UF70   A0A1B0DEM4   A0A0C9QMS5   A0A0C9PTZ8   A0A0P6AB81   A0A182FJE2   A0A3B4GNL2   A0A3Q3C2E3   A0A3Q4GBJ9   A0A3P9AYR9   G3Q3V9   A0A3P8NBM6   I3KGW7   R7TE37   A0A3P9IL75   A0A3Q0RHL2   A0A3P8S0Y3  

Pubmed

19121390    26354079    22118469    26227816    24845553    18362917    + More
19820115    24438588    25830018    12364791    25348373    28004739    23537049    17994087    24495485    15632085    17550304    18057021    11018515    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    20798317    25315136    26108605    24508170    29403074    21292972    27289101    24945155    25474469    26483478    17510324    25401762    25186727    23254933    17554307   

EMBL

BABH01000977    RSAL01000276    RVE43105.1    NWSH01006006    PCG63757.1    ODYU01001018    + More
SOQ36654.1    KQ460205    KPJ16879.1    AGBW02013857    OWR42634.1    KQ459606    KPI91251.1    JTDY01000166    KOB78485.1    NEVH01019960    PNF22270.1    DS233570    EDS30558.1    KK852782    KDR16618.1    GFDF01000146    JAV13938.1    GFDF01000342    JAV13742.1    APCN01004029    APCN01004030    APCN01004031    GEHC01000004    JAV47641.1    AXCN02001221    KQ971338    KYB27911.1    AXCM01009022    UFQT01002640    SSX33831.1    ATLV01013422    KE524855    KFB37952.1    UFQS01002721    UFQT01002721    SSX14591.1    SSX33989.1    GBXI01017622    JAC96669.1    AAAB01008846    EAA06160.5    GAKP01013977    JAC44975.1    GEZM01060161    JAV71231.1    OUUW01000016    SPP88810.1    APGK01017892    APGK01017893    KB740057    ENN81788.1    CH479190    EDW25854.1    GAMC01012433    JAB94122.1    CH379063    EAL32478.2    CM000162    EDX00927.1    CH954183    EDV45509.1    KQS25987.1    KQ414889    KOC59809.1    AE014298    AF277393    BT064640    AL030994    AAF45663.1    AAG17402.1    ACN29337.1    ACZ95176.2    ACZ95177.1    ACZ95178.1    CAA19736.1    GL451753    EFN78643.1    CH964239    EDW82117.2    CH916371    EDV91727.1    JRES01000125    KNC33987.1    APGK01008818    APGK01008819    KB737790    ENN82924.1    KQ434827    KZC07480.1    CH940757    EDW71529.1    KK107488    EZA50010.1    CH902632    EDV32714.1    CH933812    EDW06224.2    JXJN01007595    JXJN01007596    JXJN01007597    PYGN01000367    PSN47579.1    KK113457    KFM60252.1    CCAG010012243    CCAG010012244    CCAG010012245    BT064638    ACN29335.1    GL732612    EFX71196.1    CP012528    ALC48182.1    LJIJ01000275    ODM99510.1    GAPW01003624    JAC09974.1    KB632278    ERL91228.1    APGK01008440    APGK01008441    APGK01008812    APGK01008813    KB737789    KB737692    ENN82925.1    ENN82960.1    GDIQ01001237    LRGB01000248    JAN93500.1    KZS20050.1    KQ976463    KYM84598.1    LNIX01000006    OXA53247.1    GBBI01003775    JAC14937.1    JXUM01035407    KQ561058    KXJ79834.1    GBRD01015154    JAG50672.1    CH477361    EAT42667.1    GBYB01004795    GBYB01004796    JAG74562.1    JAG74563.1    KQ982656    KYQ52701.1    CH478624    EAT32707.1    GBHO01044142    GBHO01027147    GBHO01027146    GBHO01017072    GBHO01017071    GBHO01017069    GBRD01015155    GBRD01015153    JAF99461.1    JAG16457.1    JAG16458.1    JAG26532.1    JAG26533.1    JAG26535.1    JAG50671.1    AJVK01005661    GBYB01004794    JAG74561.1    GBYB01004793    JAG74560.1    GDIP01031960    JAM71755.1    AERX01023408    AERX01023409    AERX01023410    AERX01023411    AERX01023412    AMQN01003279    KB311417    ELT89316.1   

Proteomes

UP000005204    UP000283053    UP000218220    UP000053240    UP000007151    UP000053268    + More
UP000037510    UP000235965    UP000002320    UP000027135    UP000075920    UP000075880    UP000076407    UP000075840    UP000075900    UP000075903    UP000075885    UP000075886    UP000007266    UP000075883    UP000030765    UP000007062    UP000268350    UP000019118    UP000008744    UP000001819    UP000002282    UP000008711    UP000053825    UP000000803    UP000008237    UP000095301    UP000007798    UP000001070    UP000192221    UP000037069    UP000076502    UP000008792    UP000078200    UP000053097    UP000007801    UP000092443    UP000092445    UP000005203    UP000009192    UP000091820    UP000092460    UP000245037    UP000054359    UP000092444    UP000000305    UP000092553    UP000094527    UP000095300    UP000030742    UP000076858    UP000078540    UP000198287    UP000069940    UP000249989    UP000008820    UP000075809    UP000075902    UP000092462    UP000069272    UP000261460    UP000264840    UP000261580    UP000265160    UP000007635    UP000265100    UP000005207    UP000014760    UP000265180    UP000265200    UP000261340    UP000265080   

PRIDE

H9IVE4    O76892   

Pfam

PF04790   Sarcoglycan_1

Interpro

IPR039972   Sarcoglycan_gamma/delta/zeta        + More
IPR006875   Sarcoglycan       
IPR027662   Sgcz       

ProteinModelPortal

H9IVE4   A0A3S2TDT4   A0A2A4IUV5   A0A2H1V8S0   A0A194RHG4   A0A212EMB7   + More
A0A194PD49   A0A0L7LSP2   A0A2J7Q101   B0XJN9   A0A067R3F3   A0A182VVP4   A0A182IZG3   A0A1L8E5F9   A0A1L8E5D7   A0A182XER6   A0A182HIP2   A0A1W7R920   A0A182RZ34   A0A182V7D4   A0A182PKX1   A0A182Q3J7   A0A139WJ89   A0A182MER8   A0A336MWC4   A0A084VJ08   A0A336LCK3   A0A0A1WDX2   Q7QEN3   A0A034VT16   A0A1Y1LEB4   A0A3B0KJR1   N6TUN7   B4GTI4   W8B695   Q29J24   B4PY54   B3P9L3   A0A0L7QMM1   O76892   E2C091   A0A1I8NEH9   B4NEE8   B4JLW6   A0A1W4VFZ2   A0A0L0CP83   N6TR09   A0A154P8M7   B4MGX9   A0A1A9UZQ8   A0A026W1R6   B3MYM0   A0A1A9YI61   A0A1B0AHU2   A0A088ALA6   B4L778   A0A1A9WCH3   A0A1B0B2C5   A0A2P8YTJ9   A0A087T563   A0A1B0GEF9   C0P8L9   E9HAK5   A0A0M4F878   A0A1D2N2P5   A0A1I8NX46   A0A023ENJ0   U4UFT1   N6UMJ5   A0A0P6JZZ8   A0A151I3V0   A0A226E8B2   A0A023F0F5   A0A182HEH8   A0A0K8SBJ4   Q178M3   A0A0C9R9I4   A0A151WYC4   Q16EP8   A0A0A9X6V5   A0A182UF70   A0A1B0DEM4   A0A0C9QMS5   A0A0C9PTZ8   A0A0P6AB81   A0A182FJE2   A0A3B4GNL2   A0A3Q3C2E3   A0A3Q4GBJ9   A0A3P9AYR9   G3Q3V9   A0A3P8NBM6   I3KGW7   R7TE37   A0A3P9IL75   A0A3Q0RHL2   A0A3P8S0Y3  

KEGG

101737066    no KO assigned | (RefSeq) delta-sarcoglycan-like

GO

GO:0016012   GO:0016021   GO:0042383   GO:0048738   GO:0060047   GO:0043034   GO:0045214   GO:0007498   GO:0008307   GO:0007016   GO:0005215   GO:0009081   GO:0004817   GO:0006423   GO:0022891   GO:0003707   GO:0051537  

PANTHER

PTHR12939   PTHR12939:SF5  

Length:

325

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

26.3334499999999

Exp number, first 60 AAs:

0.00065

Total prob of N-in:

0.99772

inside

1  -  62

TMhelix

63  -  85

outside

86  -  325

 

 

Pi

149.878602

Theta

178.825095

Tajima's D

-0.561763

CLR

0.859767

CSRT

0.228538573071346

Interpretation

Uncertain