SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO07794  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA000910
Annotation
laminin_beta-wing_chain_[Bombyx_mori]
Location in the cell
Extracellular   Reliability : 3.086
 

Sequence

CDS
ATGATTCTGCGTGCTCTGTTAATTGTGTTGGCGCTGTTCGGTTATAGCAGCGCCGTATACAGCCGCGAGCGTGACCGTCTGCGAGCCGACCCGTGGCTAATTGACCGCGCTTGTGAGCTTAGCTCCTGTTATCCGGCCACCGGTAACTTACTCATTGGACGCGAAGCACGCCTCTTTGCCTCTTCGACTTGTGGCTTGCACAACCGCCAGCGTTATTGTATCGTTTCACACCTAGAACCGAAGCAGTGTTTCTGGTGCGATTCTACCAACGCTACTCTGCATAATCCTTATCTTAACCATCGGATACAGAATATTATCTACAAGTATTATCCGGGAACTCGAGTCAAGTCATGGTGGCAATCAGAAAACGGCAAGGAAAACGTAACAATTCAGTTGAACATGGAAGCAGAGTTTCATCTCACGCATTTGATAATACAATTCAGAACGTTTCGTCCTGCTGCGATGTTGGTTGAGAGATCCTTTGACTTTGGAAAAACCTGGCGGACCTACCGATACTTTGCTCACAACTGTGAAAACTTGCCAGTTCCGCATCACACTCAAAGATCGTTGACTGAAGTTGTATGCGAGTCTCGTTACTCTGGAGTGTCTCCTTCGACTGAAGGAGAAGTGATATTTAGAGTACTGCCGCCAAACATAAATGTTACAAATCCTTACTCTGAAGAAATCCAAAACTTATTACGCATGACAAATCTCAGAATTAATTTTACCAAACTGCACACTTTGGGAGATGATAAATTGGATAACAGAAAAGATATACAAGAAAAATACTACTACGCGATTTATGAAATGACAGTTCGTGGATCGTGCTCGTGTTATGGACATGCCTCTAGGTGCTTGCCGATGCCTGGAGTAGAGTCGAAAACTAACATGGTACACGGGCGTTGTGAATGTAACCATAACACTCGGGGCTTGAATTGTGAATACTGTGAAGATTTTTACAACGATCTTCCTTGGCAACCTGCAGTTGGTAAAACTTCGAATGCCTGCAAGCGATGTACATGCAATAATCACGCAACAACTTGTCATTTTGATCCCGCGGTCTACAATAAAACAGGAAAAATAAGTGGTGGTGTTTGTGATAATTGCCAGCATAATACAATTGGTGTAAACTGTGAACGTTGTAGGCCCAAGTTTTATAAGGATCCCAGCTTAGATATACAAAGTCCGGATATATGCAAACCATGTGATTGTGATCCACATGGCACAACTGATGAGGAAGTGCTTTGTGAAGGTGAAACCGATGAAGAGAATAATAAAATTGCCGGCCAATGTTTGTGCAAAACAAATGTAGATGGAACCAGATGTGACAGATGCAAAAATGGATTTTGGAACTTTGATCCCAATAACCCCTATGGCTGTGAAGCCTGCGCCTGTAACAACTTAGGAACCGTGACTGAAAAGGGATGTGATCCAACAATAGGAGAATGCTTCTGTAAACGTCATGTTACTGGAAAAAGCTGCGACCAGTGCTTGCCTGAATTTTATGGTTTAACTGACAGTGAAGATGGATGCTTACCATGTGATTGTGATATGGGTGGGTCATTAGACCACGAATGTGATGTTATAACAGGCCAATGTAAATGTAGACCTAATGTAATCGGACGCAGATGTGATCAACCACTACAAAACTTTTTTATTGGAGCTTTAGATTCTATTGTATATGAGGCAGAGTCAAGCCAGTGTAATTTACAAATCGATGATAATGCGATCCAAAGTCAAGCATGCCGCGTTTTTATAAGAGAAAATTATCCAGATGGCAAAAAAGAAACTTGGTCCGGCCCTGGGTTTATGAAACTACCGGAGAGTAGTACATTAGTATTCACTGTTAATGATTTGCAAACGAGTATGAACTACAACATATTAATAAGATATGAACCACAATCACCTTTAGATTGGAAAGAGGCAAATATTTTAATAAAAAGACCGTACCCTGTAGATGCAGAGTCTCCTTGTGCTAGTAAAGGGCCAGAAAACGATAATATAGTTACTTATCTTCCCGCAAATCAACGAAGTGTACTGGTCAAACCTGCTGTGTGCCTAGAAAAAAATCGGGAAAATGAAATAAGAATATTTATGGGTCGACAAAATGCGCAATCGTCAAATTCAAGAGCCACTATTTTGATTGATTCGATCGTTCTCATACCATCGTTTGATGACTTACCATTTTTAACAAACGGGACAGCAATGAGAGATGAGTTTGAACGTTATAACTGTGGTGATTCCTATTATTATAATCTAAATCGAGATAATATACCCGAAATTTGCAAAAAATATCACGCAAGCATTGGATTTTACGTACGCAGAGGTTCTCAGCCCTGCCAGTGTGATCCGACAGGTTCAAAAAGTCACCAATGCGACCCTTACACTGGATTTTGTCAATGCGTAGAAAACATTGTTGGGGCCCGGTGCGATCGGTGTGCGCCCGGTACATATGGCTTCAGTAAATTTGGATGTAAGCGGTGTGACTGTAGTAGTATCGGCTCACTCGATAATTTCTGTGATGCAACCAGTGGCCAATGCAAATGCAGAGCAAACACTTATGGTCGTGCTTGCAACTTGTGTCAACCAGGATATTTTAACTTTCCGAATTGCCAGCAGTGCGATTGTAATGGGCATGCATTCGAATGCGATGACAAAACGGGAGCCTGTAAAGAATGTACAGATTATACAGAGGGGAATCGATGTGAGAGATGTGTTGAAGGTTATTATGGTGATCCTCGCTTGGGCTTTGACATACCATGTAGACCATGTCCATGCCCTGGTATCAAAGGAGATACAAACAAAAATAGTCACGCAGATCGCTGTGAACTTGATCCAGAAACGAAAGACGTTGTCTGTGATTGTAGAGAAGGATACGCGGGGCCGTTATGTGACGTATGTGCGGATAATTATTATGGTGATCCACTGCGAGATGTTTGTAAAAAATGTGAATGTAACGATAATATAGATATTACAAAACCTGGTAACTGCGACCCCTACACAGGAAAATGTTTGCAATGTTTATATAATACCGCTGGAGATAGTTGTGGCGTTTGTGAAACAGGATACTATGGTGATGCTTCAGAAAAAACTTGTTACAAATGCAATTGTTCAGTTTTAGGTACTAACTTTACCATTGGAGACTGTGATAATATCACTGGGCAATGTCCTTGTCATCAAAATGTCATGGGAAAAAATTGCGATCAATGCACGGAAAATCATTGGAGAATTGCAGTTGGCACGGGATGTGACCCTTGCAACTGTGATGCCGTAGGCTCATTATCTCCTCAATGCAATCCATACATTGGAAAATGTGATTGCAAGCCAGGGTATGGTGGCAGGCAATGCGACCAATGTCAAGAAAATTATTGGGGCAATCCCAATATTGAGTGTTTTGAGTGTGATTGCGATCCAAACGGTTCGATTTCCCAACAATGTATGAGAGAAAATGGGTCTTGTATTTGTAAACCAGGAATTGGTGGTCATAAATGTTTTACATGTGCGAGAGGTTTTCTCGGAGATGCGCCACATTGTTATGCATGTGGAGAATGTTTTGATAATTGGGATCGAATAATAGACTATCTGCGCATAGAAACTGATTCTGCCATTAGAAATGCTAGTAAAATAAAATCGATTGGTGCAACAGGAGTGTACACAAGAGATTTTGACGAAATGACGACAAAGTTAATGACCATAGAAAACATTATCCAAAGAGAAAAAGAAGGACAATCAACCATCCCTGATTTATTATCCAATATAACAAACATTCAAAAACTTATCACAAAAACCGAACAAAAAATAAAAAACAGCAACAGGCATCTAAATGATGTGACAGCCAAAATAAATCTCGGAAACGTCACTTTGGATGGTATAAGAAAAGAAACAGATAAATTAAAATCGAAAGCTATCGACCTAGGGAACAACGCCACTAAGTTACAAGAAGCTAATTTAGAAGGAGCACTTAATCTTACACGGGAGGCTAAGCACAGAGCAGTCAAAGCTTTAAATGATGCTAATCATCTACAAAATGATATAGCAAAGACAGATCGTCAACTGAAAAATACAGACAGACTTATAGAAATGCAATATGGCAACTTTAATACTACTCAAAATGAAAATGACAAAAAACTTACCCAAATGCAAGAACAGGTAGATCGACTTGAAACTATAATACCTAAATTAAATGATAAAATGTGCGGACAGGAAACAGATACTTGTGATATATGTGGAGGTGCAGGATGTGGCAAATGTGGTGGGATATCGTGTGATCAAGGAGCTGTAACAAAAGCCGAACAAGCCCTTGATTTTGCCAATAAAACCGAATATAGAATCAAAGAACACGAACTTAGCGCTGAGGATATGTATAAAAATATCTCACAAGTAAGACAAAATACTGTTTCAGTTAGATCAAAAGCTAGTGATTTATACAATCGAGCGTTTCATTTTAAATCAACAGCAGAAAGAGTAACTAATGAAAGTCAAGAATTGACAGCAGAATTAAAAGACTTTTTATCGAACACATCCAATACTCCAGCCGATGTTAGAACGTTAGCAAACGATATTCTTAATCTGTCGATAAGAATTGAACCTAAAGAAATTACAGACTTATCACAGCGAATCAATGAATCAGTTTCGCAGTTGACTAATATTGAAAATATAATTGCAGAAACTGCACCGGATTTGGAAAGGGCTAAAGCTCTCAAAGACAATGCAACATCTGCCAGTAATAATGCCAATCTAACGTTAGATATGGCGAACAAAGTTCTACAATCTCTTGACGAGGCTCAAGCAGCACAAGATGCGGCTGAGAACGCAATAGAAAAAGCGAATAGCGATATAGAAGCCGCGAAAAGTGATTTAATTCCAATAGCATTAGAGACTGAACAAGCGCAAAAAAAAGCAAATGAAACTATAGAAGACGTTGAAGCCCTACGATTACGACTTTCGCATTTACAAAAAGATATTTTAAAGATTGAAAGCGACGCGGAACAAGTAAAACACGAAGCAGATGATGTTGTTAATCGTGCAGAAGGCGCGGAACTCAAAGCAAGACAACTCCGACAAAATTTCAAGCAAACAAATAAGTCCTTAACAGAACGGTCTAGTCAAACTCTTAATTCAAGGGAACGGGCACAAATGTTGCTGGACCGTGCTACGAAGCTAGCTAGTGAAACACAAACGCAAAAATGA
Protein
MILRALLIVLALFGYSSAVYSRERDRLRADPWLIDRACELSSCYPATGNLLIGREARLFASSTCGLHNRQRYCIVSHLEPKQCFWCDSTNATLHNPYLNHRIQNIIYKYYPGTRVKSWWQSENGKENVTIQLNMEAEFHLTHLIIQFRTFRPAAMLVERSFDFGKTWRTYRYFAHNCENLPVPHHTQRSLTEVVCESRYSGVSPSTEGEVIFRVLPPNINVTNPYSEEIQNLLRMTNLRINFTKLHTLGDDKLDNRKDIQEKYYYAIYEMTVRGSCSCYGHASRCLPMPGVESKTNMVHGRCECNHNTRGLNCEYCEDFYNDLPWQPAVGKTSNACKRCTCNNHATTCHFDPAVYNKTGKISGGVCDNCQHNTIGVNCERCRPKFYKDPSLDIQSPDICKPCDCDPHGTTDEEVLCEGETDEENNKIAGQCLCKTNVDGTRCDRCKNGFWNFDPNNPYGCEACACNNLGTVTEKGCDPTIGECFCKRHVTGKSCDQCLPEFYGLTDSEDGCLPCDCDMGGSLDHECDVITGQCKCRPNVIGRRCDQPLQNFFIGALDSIVYEAESSQCNLQIDDNAIQSQACRVFIRENYPDGKKETWSGPGFMKLPESSTLVFTVNDLQTSMNYNILIRYEPQSPLDWKEANILIKRPYPVDAESPCASKGPENDNIVTYLPANQRSVLVKPAVCLEKNRENEIRIFMGRQNAQSSNSRATILIDSIVLIPSFDDLPFLTNGTAMRDEFERYNCGDSYYYNLNRDNIPEICKKYHASIGFYVRRGSQPCQCDPTGSKSHQCDPYTGFCQCVENIVGARCDRCAPGTYGFSKFGCKRCDCSSIGSLDNFCDATSGQCKCRANTYGRACNLCQPGYFNFPNCQQCDCNGHAFECDDKTGACKECTDYTEGNRCERCVEGYYGDPRLGFDIPCRPCPCPGIKGDTNKNSHADRCELDPETKDVVCDCREGYAGPLCDVCADNYYGDPLRDVCKKCECNDNIDITKPGNCDPYTGKCLQCLYNTAGDSCGVCETGYYGDASEKTCYKCNCSVLGTNFTIGDCDNITGQCPCHQNVMGKNCDQCTENHWRIAVGTGCDPCNCDAVGSLSPQCNPYIGKCDCKPGYGGRQCDQCQENYWGNPNIECFECDCDPNGSISQQCMRENGSCICKPGIGGHKCFTCARGFLGDAPHCYACGECFDNWDRIIDYLRIETDSAIRNASKIKSIGATGVYTRDFDEMTTKLMTIENIIQREKEGQSTIPDLLSNITNIQKLITKTEQKIKNSNRHLNDVTAKINLGNVTLDGIRKETDKLKSKAIDLGNNATKLQEANLEGALNLTREAKHRAVKALNDANHLQNDIAKTDRQLKNTDRLIEMQYGNFNTTQNENDKKLTQMQEQVDRLETIIPKLNDKMCGQETDTCDICGGAGCGKCGGISCDQGAVTKAEQALDFANKTEYRIKEHELSAEDMYKNISQVRQNTVSVRSKASDLYNRAFHFKSTAERVTNESQELTAELKDFLSNTSNTPADVRTLANDILNLSIRIEPKEITDLSQRINESVSQLTNIENIIAETAPDLERAKALKDNATSASNNANLTLDMANKVLQSLDEAQAAQDAAENAIEKANSDIEAAKSDLIPIALETEQAQKKANETIEDVEALRLRLSHLQKDILKIESDAEQVKHEADDVVNRAEGAELKARQLRQNFKQTNKSLTERSSQTLNSRERAQMLLDRATKLASETQTQK

Summary

Similarity
Belongs to the ligand-gated ion channel (TC 1.A.9) family.
EMBL
KP057212    KP057213    AJO16035.1    AJO16036.1    BABH01001021    KQ460205    + More
KPJ16864.1    ODYU01002443    SOQ39939.1    AGBW02013857    OWR42617.1    NWSH01000724    PCG74602.1    KQ459606    KPI91234.1    JTDY01000285    KOB77906.1    KK852812    KDR15871.1    FX985275    BAX07288.1    GEDC01026358    GEDC01025769    GEDC01012221    GEDC01005588    JAS10940.1    JAS11529.1    JAS25077.1    JAS31710.1    FX985613    BBF97944.1    KK107929    EZA47108.1    QOIP01000003    RLU24615.1    KQ971307    EFA11219.2    KQ981856    KYN34571.1    ADTU01005181    GL888624    EGI58809.1    KYB29725.1    GDIP01157664    JAJ65738.1    GDIQ01187334    JAK64391.1    GDIP01139124    JAL64590.1    GDIP01137966    JAL65748.1    KZ288186    PBC34857.1    GDIQ01216734    JAK34991.1    GL732533    EFX84988.1    KQ435794    KOX74111.1    KQ434775    KZC04081.1    CVRI01000056    CRL01684.1    GDIP01007519    JAM96196.1    GDIQ01216733    JAK34992.1    CH477279    EAT44989.1    KQ982557    KYQ55087.1    KQ976440    KYM86574.1    KQ979955    KYN18545.1    GL438602    EFN68709.1    AXCN02000029    AAAB01008987    EAA01110.5    KQ977394    KYN03007.1    ATLV01019511    KE525273    KFB44302.1    GFDL01006031    JAV29014.1    GFDL01005983    JAV29062.1    GDIP01217710    JAJ05692.1    NNAY01000655    OXU27159.1    AXCM01000734    KQ763877    OAD54662.1    GDRN01086751    JAI61126.1    GANO01001191    JAB58680.1    ADMH02001061    ETN64240.1    UFQS01000755    UFQT01000755    SSX06643.1    SSX26989.1    UFQS01000940    UFQT01000940    SSX07874.1    SSX28108.1    LNIX01000017    OXA45820.1    KQ414591    KOC70268.1    GEZM01064050    GEZM01064049    JAV68846.1    LRGB01002384    KZS07918.1    GGMS01003999    MBY73202.1    GFXV01006105    MBW17910.1    DS235005    EEB10305.1    GGMS01002185    MBY71388.1    LJIJ01000044    ODN04402.1    KB632399    ERL94756.1    APGK01039034    KB740967    ENN76757.1    CCAG010002563    GFAA01003492    JAT99942.1    GEDV01006205    JAP82352.1    GEDV01001686    JAP86871.1    GANP01013218    JAB71250.1    GANP01008748    JAB75720.1    KA646504    AFP61133.1    GDHF01030777    GDHF01027514    GDHF01019455    GDHF01017718    GDHF01016705    GDHF01003465    JAI21537.1    JAI24800.1    JAI32859.1    JAI34596.1    JAI35609.1    JAI48849.1    CH933807    EDW13200.1    KRG03603.1    KRG03604.1    KRG03605.1    KRG03606.1    GAKP01020029    GAKP01020028    JAC38923.1    GBXI01014674    GBXI01011123    JAC99617.1    JAD03169.1    GAMC01014897    GAMC01014896    JAB91658.1   
Pfam
PF00055   Laminin_N        + More
PF00053   Laminin_EGF
PF18199   Dynein_C
PF12777   MT
PF18198   AAA_lid_11
PF12780   AAA_8
PF12781   AAA_9
PF12774   AAA_6
PF08393   DHC_N2
PF07728   AAA_5
PF01928   CYTH
PF02931   Neur_chan_LBD
PF02932   Neur_chan_memb
Interpro
IPR038684   Laminin_N_sf        + More
IPR013015   Laminin_IV_B       
IPR000742   EGF-like_dom       
IPR013032   EGF-like_CS       
IPR008211   Laminin_N       
IPR002049   Laminin_EGF       
IPR009030   Growth_fac_rcpt_cys_sf       
IPR041658   AAA_lid_11       
IPR041228   Dynein_C       
IPR042228   Dynein_2_C       
IPR035699   AAA_6       
IPR042219   AAA_lid_11_sf       
IPR013602   Dynein_heavy_dom-2       
IPR027417   P-loop_NTPase       
IPR024743   Dynein_HC_stalk       
IPR024317   Dynein_heavy_chain_D4_dom       
IPR035706   AAA_9       
IPR042222   Dynein_2_N       
IPR011704   ATPase_dyneun-rel_AAA       
IPR008979   Galactose-bd-like_sf       
IPR023577   CYTH_domain       
IPR033469   CYTH-like_dom_sf       
IPR008173   Adenylyl_cyclase_CyaB       
IPR036719   Neuro-gated_channel_TM_sf       
IPR006202   Neur_chan_lig-bd       
IPR006028   GABAA/Glycine_rcpt       
IPR006029   Neurotrans-gated_channel_TM       
IPR036734   Neur_chan_lig-bd_sf       
IPR006201   Neur_channel       
IPR018000   Neurotransmitter_ion_chnl_CS       
IPR013087   Znf_C2H2_type       
SUPFAM
SSF57184   SSF57184        + More
SSF52540   SSF52540       
SSF49785   SSF49785       
SSF55154   SSF55154       
SSF63712   SSF63712       
SSF90112   SSF90112       
PDB
4AQS     E-value=4.33874e-172,     Score=1558

Ontologies

Topology

SignalP
Position:   1 - 18,         Likelihood:  0.990602
 
 
Length:
1729
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
4.18781999999999
Exp number, first 60 AAs:
4.1875
Total prob of N-in:
0.22422
outside
1  -  1729
 
 

Population Genetic Test Statistics

Pi
16.927881
Theta
189.720628
Tajima's D
-0.874447
CLR
138.817587
CSRT
0.158742062896855
Interpretation
Uncertain
Peptides ×
Source Sequence Identity Evalue
24402669 SHNEIAPIHVR 100.00 1e-08
28467696 SHPDPPCHEVKNEQIK 100.00 1e-08
24402669 RAWDICNVITEEPFSQCGK 95.45 8e-08
26280517 CDIQSWAVDMAR 95.24 1e-07
26280517 ISFDKDASIAK 100.00 4e-07
24402669 ISGFIIPHPGFNVIKPQFDGR 100.00 4e-07
24402669 CDCIAGFK 95.24 5e-07
26822097 SITEVVCESR 100.00 8e-04
26280517 YSFFDDIR 100.00 8e-04
28467696 YSGHSMSDPGTSYR 100.00 8e-04
28556443 YSGVSPSTEGEVIFR 100.00 8e-04
28556443 VIGATGAYTR 100.00 8e-04
28556443 NDLAPIAMETEEAR 100.00 8e-04
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