Silkworm Genome Informatics Database

Gene

KWMTBOMO07792

Pre Gene Modal

BGIBMGA000914

Annotation

PREDICTED:_cytoplasmic_dynein_2_heavy_chain_1-like_[Papilio_machaon]

Location

Bomo_Chr13(+):6959626-6965885 View in EpiBrowser

Location in the cell

Cytoplasmic Reliability : 1.352

CDS

ATGTCGGATGTGGATTCGCCTCAACTGCTAGGCCTGCCCGACAACTGCGGACTGGCCCGAGAAAGAACCGCGGCCAACGATATTATAATTGGATTAAAAGAGCTGAACACAACTGTCAGTCCAATGGAGAAGTCGAACAGTGTCGCTTCACTCAAAAGTTTGCTGGCGCTGTGGAAAAAGCTTATGGCCGGGAGCCCCCTCCTCAAATCAGATTATGTAATTGAAGAGAAGGAGCGTCAGGGCTGGTGGGCCGCGGCGTGCGGCGCGGAACTGCACGACGCCCGCCGCGCCGCACGCGCCGTGCACGCCGCCCTGGCGCAACGCGCACGCAGCGGCGCGCCCCTGCACAAGGTCCCAGACGAATGGCAACTGCTATGGCTCGGACCGGACGCTCCCGACGCTTACATCAAAGAACTCTGTCATCGAGTTCGGTCCGCATTAGAAAGATTTGAAACGTTGACCGACGAAATGCCAAAAGAAGTGGACCTCCGCTCGTTCCTGCGTCCATCGCGAGTGGTGTGGGCGCTGCTCGTGCGCGCCGCCGAGGGCCGCAACTGCTCCGTCGATACATTAATGCTTGCCGCTAAGTGGAACTGTCCAGAGGAGAGCCCGGCCGGGGACAGCGTGCGGCTGCGCGGCGTGCAGCTGAGCGGGTGCGAGTGCGGCGCCGCGGGCGTGCAGCCGGCCCCGCCCCGCGCGCCGCCGCACCGCCCCGCGCCCCCGCTGCACGTGCGCTGCGTGTCCACGCACGAAGATAGTAGTCTGCTGGCGGAAGGTGTGCTGGAAGTGCCCGTGTACTCGAACGAGAGCAGGGAGGAGCTCGTGTTCGAGATGCGGGTGCCGCTCGCGAGATCGTTCAGCGCTGAAACCGCGACACTACACACGGTCGCTATGTTCATCGGACCAGTTGATTGA

Protein

MSDVDSPQLLGLPDNCGLARERTAANDIIIGLKELNTTVSPMEKSNSVASLKSLLALWKKLMAGSPLLKSDYVIEEKERQGWWAAACGAELHDARRAARAVHAALAQRARSGAPLHKVPDEWQLLWLGPDAPDAYIKELCHRVRSALERFETLTDEMPKEVDLRSFLRPSRVVWALLVRAAEGRNCSVDTLMLAAKWNCPEESPAGDSVRLRGVQLSGCECGAAGVQPAPPRAPPHRPAPPLHVRCVSTHEDSSLLAEGVLEVPVYSNESREELVFEMRVPLARSFSAETATLHTVAMFIGPVD

Uniprot

H9IUI4 A0A2H1VCZ8 A0A2A4JS64 A0A194RHE9 A0A194PJH1 A0A212EMB0 + More

Pubmed

19121390 26354079 22118469

EMBL

BABH01001005 BABH01001006 BABH01001007 BABH01001008 BABH01001009 ODYU01001877 + More
SOQ38695.1 NWSH01000724 PCG74606.1 KQ460205 KPJ16864.1 KQ459606 KPI91235.1 AGBW02013857 OWR42618.1

Proteomes

UP000005204 UP000218220 UP000053240 UP000053268 UP000007151

PRIDE

H9IUI4

Pfam

PF12774   AAA_6        + More
PF12781   AAA_9
PF03028   Dynein_heavy
PF12780   AAA_8
PF18199   Dynein_C
PF12777   MT
PF00053   Laminin_EGF
PF18198   AAA_lid_11
PF08393   DHC_N2
PF00055   Laminin_N

Interpro

IPR035706   AAA_9        + More
IPR026815   DYNC2H1
IPR027417   P-loop_NTPase
IPR024743   Dynein_HC_stalk
IPR024317   Dynein_heavy_chain_D4_dom
IPR026983   DHC_fam
IPR042219   AAA_lid_11_sf
IPR004273   Dynein_heavy_D6_P-loop
IPR041228   Dynein_C
IPR035699   AAA_6
IPR041658   AAA_lid_11
IPR000742   EGF-like_dom
IPR042228   Dynein_2_C
IPR008211   Laminin_N
IPR013032   EGF-like_CS
IPR013602   Dynein_heavy_dom-2
IPR013015   Laminin_IV_B
IPR038684   Laminin_N_sf
IPR002049   Laminin_EGF
IPR042222   Dynein_2_N

SUPFAM

SSF52540 SSF52540

Gene 3D

1.10.8.720 1.20.140.100 2.60.120.1490 3.20.180.20

ProteinModelPortal

H9IUI4 A0A2H1VCZ8 A0A2A4JS64 A0A194RHE9 A0A194PJH1 A0A212EMB0 + More

PDB

4RH7 E-value=0.000364142, Score=102

KEGG

101735521 K13100 pre-mRNA-splicing factor CWC22 | (RefSeq) pre-mRNA-splicing factor CWC22 homolog

GO

GO:0003777 GO:0007018 GO:0030286 GO:0005524 GO:0009081 GO:0004817 GO:0006423 GO:0016021 GO:0022891 GO:0003707 GO:0051537

PANTHER

PTHR10676 PTHR10676:SF352

Length:

304

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02022

Exp number, first 60 AAs:

7e-05

Total prob of N-in:

0.00639

outside

1 - 304

Pi

191.670115

Theta

137.312743

Tajima's D

0.03627

CLR

0.370066

CSRT

0.388680565971701

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics