Silkworm Genome Informatics Database

Gene

KWMTBOMO07787

Pre Gene Modal

BGIBMGA000908

Annotation

PREDICTED:_intraflagellar_transport_protein_88_homolog_[Papilio_machaon]

Location

Bomo_Chr13(+):6834366-6842787 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.285

CDS

ATGTCGTGGTGTGTGGAGGCGTTGCGCGGGTACAGCGGTGCGGGGGGCGCGGGCGGCGCGGCGGGGGGGCGGCTGGAGCTTGGCGCGGCGCTCTCGTCCCTGCGCGCCTCCCGCACCGCCCGCTCCGGGCTCGCCGTACTGCAGCGACTAAAGGCCGTTGCGAAGGCGCACGCTGAGGACCGAGTGCTACGAGCCGAGGCCAATGCTGATGCAGCCTTCGTTGCCTACGCCCTGGGCAATTGGAGCGAGGCTCGTTCACTATCAGAGTCGGCGTCTCGTGACGATCCGTACTCGTGCGCGGCGCGCGTGACGCTCGCGCTGTCGTCGCTGCAAGCGTCGCTGTCGGAGGACGCGGCGCCGGAGCTGGCGTGGCGGGAAGCAGCCGAAACCCTCACGGCGGCCACACACCTCGACCCGGCCGACCTTATCGCTGCACATGATTTAGCTCTGTGCCTGGAGAAAACAGCGGGTCAGGAGGGCTTGTCGGTAGCGGCGGCGCGCTGGTCGCGGGTGCGTGCGTGCGGCGCGCCGTCGCACACGCTGCGCCCGCTCGCCGCCGCCGCACTCGCGCGCCTCGCGCTCCGCCACCCCGCCGATCACGCCGCCGCCGAACACTGGTACAGTCTGATTGGAAATTGGGATGCAGGCGTGACCTCCGCCCTAGCCCAGCTCCACAGCGAGATGGGCGATACGCAAACAGCCAAACACCATTACCAAGACGTAGAAGCAATATGGCCGTGCGATTTAACAGCCCTCGAGTGGCTGGCGGGCGAGTCACCGCCAGATGTCGCCTTGCAGTACTACAGACGAGCTGCGCGACTAGAGCCGACTAATCCACAATGGGGCTTACTGATGGGCGGCTGCCTCCGAGCCACGGGCCGGTACCAGGAAGCACTCAGCCTGTATAAGAAAATGAATACCCGTTTCCCCGACAATGTACAATGTCTGAAATTAATAGTGAAATTGTGCGGAGATCAAGGTTTATCTGAGACGAGCACGTGGACGCGAGAGTTACAGCGTGCGCAGGCCAGGCTCAAGCAGCAGGAAAGAGCATCTGTGATATCTGCGGGGAGTGGATCGTCCAGAGCGAGTCTGTCACCAGTCGACTTAAGAGCAATATCTCGAGTTAACAGTGCGGCAACTCAACCTCCGCCTACCGCTTCTCAACCCTCTGGTGAAGGACGCAAAGGCAGTGATGTCCAAAGTTATAAGTATACTGAAAGTTTTAGTTTTCGAGATGGTTTACAGCCTTCGAATCGATCGCGCACTAGTGCGGGTAGAAAGAAAAACGTTGAAGAATTAGAAGACGATTTACCGTTACCTCCGGAGTAG

Protein

MSWCVEALRGYSGAGGAGGAAGGRLELGAALSSLRASRTARSGLAVLQRLKAVAKAHAEDRVLRAEANADAAFVAYALGNWSEARSLSESASRDDPYSCAARVTLALSSLQASLSEDAAPELAWREAAETLTAATHLDPADLIAAHDLALCLEKTAGQEGLSVAAARWSRVRACGAPSHTLRPLAAAALARLALRHPADHAAAEHWYSLIGNWDAGVTSALAQLHSEMGDTQTAKHHYQDVEAIWPCDLTALEWLAGESPPDVALQYYRRAARLEPTNPQWGLLMGGCLRATGRYQEALSLYKKMNTRFPDNVQCLKLIVKLCGDQGLSETSTWTRELQRAQARLKQQERASVISAGSGSSRASLSPVDLRAISRVNSAATQPPPTASQPSGEGRKGSDVQSYKYTESFSFRDGLQPSNRSRTSAGRKKNVEELEDDLPLPPE

Uniprot

A0A212FI03

Pubmed

22118469

EMBL

AGBW02008449 OWR53374.1

Proteomes

UP000007151

Interpro

IPR013026   TPR-contain_dom        + More
IPR019734   TPR_repeat
IPR011990   TPR-like_helical_dom_sf

SUPFAM

SSF48452 SSF48452

Gene 3D

1.25.40.10

ProteinModelPortal

A0A212FI03

PDB

2WQH E-value=0.00864771, Score=93

KEGG

101736766 K16474 intraflagellar transport protein 88 | (RefSeq) intraflagellar transport protein 88 homolog

GO

GO:0031514 GO:0005515 GO:0004812 GO:0005524 GO:0006418 GO:0004817 GO:0006423 GO:0016021 GO:0022891 GO:0003707 GO:0051537

Length:

443

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0776899999999999

Exp number, first 60 AAs:

0.07699

Total prob of N-in:

0.00721

outside

1 - 443

Pi

212.764922

Theta

154.093559

Tajima's D

1.120136

CLR

0.492627

CSRT

0.693565321733913

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics