Gene

KWMTBOMO07786

Pre Gene Modal

BGIBMGA000907

Annotation

PREDICTED:_intraflagellar_transport_protein_88_homolog_[Amyelois_transitella]

Location

Bomo_Chr13(+):6824996-6830895      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.302 Mitochondrial   Reliability : 1.442 Nuclear   Reliability : 1.172

CDS

ATGGTGCGGCTTGGCACGGTAAGCATGCGAGACGTGGGTTCGAGGTCCGGTACATCAGCACGTCCCGTGACCGCACTGCGCGCTGCTGGGTACACCTCGGCGTCACGCGATCGACCCATGCCCACTCAACATTTGGAAGACAGCGTCGAAGATCGCGTTAAGCAAATGGAAGCACGAATCATGGCATTGGTGGAGGAGTCTTGTTTACTGAGCGCCCGACCAGATCCTGATGATGATAGTACTACTAGAAAAGAACATGACTTGGGCCAGGCACTTGCAAAGGCTCAAGAGGCGTCCACGATGGAACGACAGCTTATTCGCATGCAAGAACAAGCGAACTTGGGTGACACTCACAACTTGGATTTGACTTTTGCTGTGCTTTGTAACTTGGCGGATCAGTACGCACTGAACGAGATGTACACTGAAGCACTGAACACGTATCAGTTGCTGACTAGAAACAAGTTGTTTCCGCATGCTAACCGACTCAAGGTGAACATGGGAAATATTTATTTTAAAATGGGAGAACATCCGAAAGCTTTGAAGCTTTATAGGATGGCACTAGATCAAACGCCGACAGCCGAAAAGGATTTGAGAATGAAAGTAATGCATAACATTGGTCTCCTCTTGGTTCGTATGGGAAAATTTCGGGATGCTGTAACAAATTTTCAGCACATAATGCACGAACAAGGTGATTTTCAAACAGGTCTACACCTGGTTTTATGCTCTGTGGCACTCAGTGACGCAGAAGGAGGGAAAGCTGCTTTCCATGCAATGCTGGATGTCGAACCGCCGACTTACCACCAGGACATTCCTATTGATGACGAGAAAGATACTTACGAGTGCGTTGTCCGCGACGTGTCACGCGGAGATAAACTGTCTCGCTGGTCTCGGCGCGCGGCCGCTGAAGCTGAACGATGTCTGGCACTGGCCGCTGCGGTCCTCACACCCACAGCGGGGACGGACGATGATTCAGGGTGA

Protein

MVRLGTVSMRDVGSRSGTSARPVTALRAAGYTSASRDRPMPTQHLEDSVEDRVKQMEARIMALVEESCLLSARPDPDDDSTTRKEHDLGQALAKAQEASTMERQLIRMQEQANLGDTHNLDLTFAVLCNLADQYALNEMYTEALNTYQLLTRNKLFPHANRLKVNMGNIYFKMGEHPKALKLYRMALDQTPTAEKDLRMKVMHNIGLLLVRMGKFRDAVTNFQHIMHEQGDFQTGLHLVLCSVALSDAEGGKAAFHAMLDVEPPTYHQDIPIDDEKDTYECVVRDVSRGDKLSRWSRRAAAEAERCLALAAAVLTPTAGTDDDSG

Uniprot

A0A2H1V0W0   A0A2A4K4L5   A0A194PDX8   A0A194RHE3   H9IUH7   A0A212FI03   + More
A0A1B6D4C7   A0A182GCL0   A0A182GTE6   A0A182T0Z5   Q170Z5   A0A0P4VXQ7   A0A2J7QW55   A0A1B6MSL4   A0A182FC49   B0WMM8   W5JMJ3   A0A182K9R2   A0A0K2V4U7   Q5TR18   T1IRH6   A0A182VJN3   A0A182PUS8   A0A084WKC3   A0A182LLC5   A0A182I106   A0A182LWX9   A0A182X0V3   A0A1W4WAB5   A0A158NYM8   A0A182QMI6   A0A0P4VSY1   A0A182WCE8   A0A0P4VZY5   A0A182RD53   A0A182YLD6   A0A182JBM2   V3ZVG1   A0A067R699   A0A182NC56   C3YI17   A0A232ENE1   K7J4M1   A0A1S3HGK4   A0A1S3HGH7   A0A195B1Q2   A0A1B0D291   A0A1W4WAE6   K1QZL1   A0A151WTW7   A0A2T7P3V8   A0A195FTZ5   E2C3N0   E0VSX6   A0A0J7NVH0   E2ANK8   F4WXX6   E9J4T4   A0A336MIV5   A0A1J1IIN9   A0A3R7QAT0   A0A210PHP8   A0A0K8TIU5   A0A026WTW6   A0A154PQV1   R7TWS1   A0A2B4SZ51   D6WHQ7   A7T8G7   A0A0B7BL31   A0A2G8JYD8   A0A2G8K2I0   A0A3L8DVA3   A0A2S2P713   A0A0M8ZXG9   H2ZWI9   A0A2A3ENM9   M3XJE8   D2ILS7   A0A3B4UMY8   V9KG67   V9KG26   A0A088ADN2   I3KF91   A0A3Q3AP65   G3N915   A0A3B4UKZ1   A0A3Q1CSN7   A0A3B4UKD1   A0A3B4YPP8   A0A3P8U430   A0A3B4Y9F9   A0A3P9CUG5   A0A3Q3AQ34   A0A3Q3AQJ6   A0A3P8U457   A0A3Q3B3J0   A0A3B4Z3W6  

Pubmed

26354079    19121390    22118469    26483478    17510324    20920257    + More
23761445    12364791    14747013    17210077    24438588    20966253    21347285    25244985    23254933    24845553    18563158    28648823    20075255    22992520    20798317    20566863    21719571    21282665    28812685    24508170    18362917    19820115    17615350    29023486    30249741    9215903    19933103    24402279    25186727   

EMBL

ODYU01000170    SOQ34493.1    NWSH01000189    PCG78602.1    KQ459606    KPI91228.1    + More
KQ460205    KPJ16859.1    BABH01001026    AGBW02008449    OWR53374.1    GEDC01016739    JAS20559.1    JXUM01009771    KQ560291    KXJ83225.1    JXUM01086946    KQ563601    KXJ73605.1    CH477462    EAT40549.1    GDRN01099877    JAI58679.1    NEVH01009768    PNF32806.1    GEBQ01001040    JAT38937.1    DS231999    EDS31110.1    ADMH02000619    ETN65597.1    HACA01027615    CDW44976.1    AAAB01008960    EAL40045.3    JH431361    ATLV01024108    KE525349    KFB50667.1    APCN01000010    AXCM01004546    ADTU01004082    ADTU01004083    AXCN02000408    GDRN01099881    GDRN01099875    JAI58677.1    GDRN01099879    JAI58678.1    KB203357    ESO84911.1    KK852667    KDR18924.1    GG666514    EEN60154.1    NNAY01003168    OXU19875.1    AAZX01007478    KQ976681    KYM78210.1    AJVK01010540    AJVK01010541    AJVK01010542    JH818378    EKC42517.1    KQ982748    KYQ51293.1    PZQS01000006    PVD28091.1    KQ981276    KYN43762.1    GL452328    EFN77453.1    DS235758    EEB16482.1    LBMM01001396    KMQ96390.1    GL441253    EFN64974.1    GL888434    EGI60912.1    GL768119    EFZ12176.1    UFQS01000985    UFQT01000985    SSX08170.1    SSX28287.1    CVRI01000047    CRK98321.1    QCYY01003863    ROT62023.1    NEDP02076687    OWF36001.1    GBRD01000324    JAG65497.1    KK107107    EZA59408.1    KQ435037    KZC14117.1    AMQN01002409    KB309137    ELT95420.1    LSMT01000009    PFX33717.1    KQ971321    EFA00677.2    DS472696    EDO27720.1    HACG01046737    CEK93602.1    MRZV01001087    PIK40752.1    MRZV01000951    PIK42216.1    QOIP01000003    RLU24364.1    GGMR01012586    MBY25205.1    KQ435824    KOX72066.1    AFYH01134842    AFYH01134843    AFYH01134844    AFYH01134845    AFYH01134846    AFYH01134847    AFYH01134848    AFYH01134849    AFYH01134850    KZ288206    PBC33114.1    GQ337482    ACZ64518.1    JW864289    AFO96806.1    JW864235    AFO96752.1    AERX01041975    AERX01041976   

Proteomes

UP000218220    UP000053268    UP000053240    UP000005204    UP000007151    UP000069940    + More
UP000249989    UP000075901    UP000008820    UP000235965    UP000069272    UP000002320    UP000000673    UP000075881    UP000007062    UP000075903    UP000075885    UP000030765    UP000075882    UP000075840    UP000075883    UP000076407    UP000192223    UP000005205    UP000075886    UP000075920    UP000075900    UP000076408    UP000075880    UP000030746    UP000027135    UP000075884    UP000001554    UP000215335    UP000002358    UP000085678    UP000078540    UP000092462    UP000005408    UP000075809    UP000245119    UP000078541    UP000008237    UP000009046    UP000036403    UP000000311    UP000007755    UP000183832    UP000283509    UP000242188    UP000053097    UP000076502    UP000014760    UP000225706    UP000007266    UP000001593    UP000230750    UP000279307    UP000053105    UP000008672    UP000242457    UP000261420    UP000005203    UP000005207    UP000264800    UP000007635    UP000257160    UP000261360    UP000265080    UP000265160    UP000261400   

PRIDE

H9IUH7   

Pfam

PF13174   TPR_6        + More
PF13181   TPR_8
PF00515   TPR_1
PF13176   TPR_7
PF07719   TPR_2
PF07720   TPR_3

Interpro

IPR019734   TPR_repeat        + More
IPR011990   TPR-like_helical_dom_sf       
IPR013026   TPR-contain_dom       
IPR001440   TPR_1       
IPR006597   Sel1-like       
IPR013105   TPR_2       
IPR011716   TPR-3       

SUPFAM

SSF48452   SSF48452       

Gene 3D

1.25.40.10    

ProteinModelPortal

A0A2H1V0W0   A0A2A4K4L5   A0A194PDX8   A0A194RHE3   H9IUH7   A0A212FI03   + More
A0A1B6D4C7   A0A182GCL0   A0A182GTE6   A0A182T0Z5   Q170Z5   A0A0P4VXQ7   A0A2J7QW55   A0A1B6MSL4   A0A182FC49   B0WMM8   W5JMJ3   A0A182K9R2   A0A0K2V4U7   Q5TR18   T1IRH6   A0A182VJN3   A0A182PUS8   A0A084WKC3   A0A182LLC5   A0A182I106   A0A182LWX9   A0A182X0V3   A0A1W4WAB5   A0A158NYM8   A0A182QMI6   A0A0P4VSY1   A0A182WCE8   A0A0P4VZY5   A0A182RD53   A0A182YLD6   A0A182JBM2   V3ZVG1   A0A067R699   A0A182NC56   C3YI17   A0A232ENE1   K7J4M1   A0A1S3HGK4   A0A1S3HGH7   A0A195B1Q2   A0A1B0D291   A0A1W4WAE6   K1QZL1   A0A151WTW7   A0A2T7P3V8   A0A195FTZ5   E2C3N0   E0VSX6   A0A0J7NVH0   E2ANK8   F4WXX6   E9J4T4   A0A336MIV5   A0A1J1IIN9   A0A3R7QAT0   A0A210PHP8   A0A0K8TIU5   A0A026WTW6   A0A154PQV1   R7TWS1   A0A2B4SZ51   D6WHQ7   A7T8G7   A0A0B7BL31   A0A2G8JYD8   A0A2G8K2I0   A0A3L8DVA3   A0A2S2P713   A0A0M8ZXG9   H2ZWI9   A0A2A3ENM9   M3XJE8   D2ILS7   A0A3B4UMY8   V9KG67   V9KG26   A0A088ADN2   I3KF91   A0A3Q3AP65   G3N915   A0A3B4UKZ1   A0A3Q1CSN7   A0A3B4UKD1   A0A3B4YPP8   A0A3P8U430   A0A3B4Y9F9   A0A3P9CUG5   A0A3Q3AQ34   A0A3Q3AQJ6   A0A3P8U457   A0A3Q3B3J0   A0A3B4Z3W6  

PDB

2WQH     E-value=0.000217433,     Score=105

KEGG

101736766    K16474 intraflagellar transport protein 88 | (RefSeq) intraflagellar transport protein 88 homolog

GO

GO:0031514   GO:1905515   GO:0097730   GO:0005814   GO:0097546   GO:0042073   GO:0036064   GO:0019894   GO:0042462   GO:0007369   GO:0072019   GO:0045494   GO:0005930   GO:0007368   GO:0071482   GO:0045880   GO:0003351   GO:0000132   GO:0060785   GO:0060122   GO:0005515   GO:0004812   GO:0005524   GO:0006418   GO:0004817   GO:0006423   GO:0016021   GO:0022891   GO:0003707   GO:0051537  

Length:

325

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00743000000000001

Exp number, first 60 AAs:

0.00043

Total prob of N-in:

0.02728

outside

1  -  325

 

 

Pi

280.369271

Theta

204.243739

Tajima's D

1.353526

CLR

0.249019

CSRT

0.751212439378031

Interpretation

Uncertain