Gene

KWMTBOMO07779  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA001239

Annotation

elongation_protein_4-like_protein_[Bombyx_mori]

Location

Bomo_Chr13(-):6663395-6667562      View in EpiBrowser

Full name

Elongator complex protein 4      

Location in the cell

Cytoplasmic   Reliability : 1.199 PlasmaMembrane   Reliability : 1.735

CDS

ATGCGTAGTTTTCGAAAATTTATAGATATAAGTACGCATATAAATGGCACAAAAGTGAAAAATAACCTACCATACGTATCTTCCGGTATTCCATCCTTAGACCATATAGTTGGTGGAGGAATACCTGCAGGCAGCATTTTTGTTGTAGAGGAAGATGTCCTTGGTGTGTACAGCAAAGTGTTATTCAAATATTTCATAGCAGAGGGTGTAGCTTGTGACCATGAATTATTTGTTACATCTTTAGATGAAGACCCACACAAAATAACATCAGAACTCCCTCAACCATGTGCTTTACCTCCAGAAGATGAAAAAGCACCAAGTACTGATGCAGAAAAAATGAAAATAGCCTGGAGATATGAAGGCCTTAGTCAAGTTGAATCATCATTTGGCAGCAACACTAATTTTGGACATAACTTTGACTTGAGCAGATACATTGATGCTGACACAATAGAAAAGAGTAAAATCCAGTATGGTACTACAACTTGGCAAGACAGTACTTTAAGCTGGCAAACGACTATGCGCAGAGGGAAATTAAAAAGTGCTTTGTTTCACAAATTGCTAAGAAATATTTACGAAACTGTATTAAGAAGTAGCGGTACAAACATGCTCAGACTTGCTATACATTCATTGGGTTCCCCTATATGGATGGCGATGGATTCTGATGATACCGAGTTCCAAAATTATGGAAGAGATCTCATAATGTTCATGTACTATTTAAGGATATTAATTAGAGACAAAAATGTTGCTGTGTTCATCACTATACCATCACATTTGTATGAGGATCCAATCATTATGAAGAAAGTTCTGTACTCGGCTCATAATGCAGTAAGGATTGAATCATTTGCTGGCTCCGAAAAAGAAACAAACCCTGTCTACAAAGATTACCACGGACTGTTTCACATTACAAAATTAACGGCGCTGTATACACTCGTACCATTCGTGCCGCCCAGTCTTGATTTAGCATTCAAGCTAAAGAGGAAGAAGTTCGTCATTGAAAAATTACACATTCCACCAGAACTTGAAGAGACGAGTGAGAGAGAGCAGGACGACATAACTGCAACGCCGTCGACTGCTTGCGGTGGATTCCGCAAAAAGGATATCGACTTTTAA

Protein

MRSFRKFIDISTHINGTKVKNNLPYVSSGIPSLDHIVGGGIPAGSIFVVEEDVLGVYSKVLFKYFIAEGVACDHELFVTSLDEDPHKITSELPQPCALPPEDEKAPSTDAEKMKIAWRYEGLSQVESSFGSNTNFGHNFDLSRYIDADTIEKSKIQYGTTTWQDSTLSWQTTMRRGKLKSALFHKLLRNIYETVLRSSGTNMLRLAIHSLGSPIWMAMDSDDTEFQNYGRDLIMFMYYLRILIRDKNVAVFITIPSHLYEDPIIMKKVLYSAHNAVRIESFAGSEKETNPVYKDYHGLFHITKLTALYTLVPFVPPSLDLAFKLKRKKFVIEKLHIPPELEETSEREQDDITATPSTACGGFRKKDIDF

Description

Acts as subunit of the RNA polymerase II elongator complex, which is a histone acetyltransferase component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.

Subunit

Component of the RNA polymerase II elongator complex (Elongator).

Similarity

Belongs to the ELP4 family.

Keywords

Complete proteome   Nucleus   Reference proteome   Transcription   Transcription regulation  

Feature

chain  Elongator complex protein 4

Uniprot

Q2F6A5   H9IVF9   A0A1E1W8E8   S4PS22   A0A2A4K2X7   A0A2H1VD57   + More
A0A194PDA4   A0A3S2TK93   A0A212FI26   A0A194RGZ0   A0A2J7PZ33   A0A067RG07   E2BB45   A0A0C9RDL9   A0A088A4X1   E2A5E7   A0A0N0BE93   A0A2A3EKI2   A0A1X7VT92   R7UXB8   A0A232FG50   A0A1S3HW70   A0A154PE92   A0A2B4SQ55   A0A3M6TXB7   U5ESZ0   A0A3B3Z7G5   A0A0J7L0L6   A0A336KXH4   A0A0S7LXL3   A0A2I4APF8   A0A1S3KWL9   A0A3P9PF55   A0A1W5ASQ4   A0A336MEQ3   V4A920   A0A3B3YH25   A0A3Q3WZK6   A0A2M4BR91   A0A1A7Y2W9   M4AIN2   K1PV90   A0A3P8P429   A0A3P9C144   A0A146NT91   A0A1Q3G1X0   A0A2M4BRA0   A0A3Q3E8R3   A0A3Q3AU09   A0A3Q2G2N7   A0A3Q1EXU1   A0A3B4GQJ2   A0A3Q2PX22   A0A3P8Z714   A0A3B3QLL1   A0A1A8NSQ0   A0A1A8D1S5   A0A1A8SN36   A0A1A8J7X3   A0A1A8UFD9   A0A1A8DF68   A0A3Q3C6J7   A0A3B5LWS8   A0A182FM22   A0A1A8EWH0   A0A3B4YUQ4   A0A3B4VDQ6   W5J4H7   A0A3Q4GYA1   A0A3Q3JJG1   A0A2M4BRA1   A0A2M4BS14   H3D8G4   A0A2M3Z7L1   A0A3S2N5L7   A0A3Q1KD25   A0A195EDC3   A0A2M4ATC8   A0A2M4AST6   H2M204   A0A210QUG7   A0A3Q3ST86   A0A3Q1B0S3   A0A3P9K7F5   A0A026W511   A0A3P9H4K9   A0A3B3D2X0   A0A3P8SF07   H0Z312   Q566Y1   A0A2D4GTD3   H3B3C7   D6W8H4   A0A2D4PF74   A0A1Y1MB31   A0A182H6Z7   A0A3Q2Y3C6   A0A2Y9D958   A0A340XHU9   H2SZ22  

Pubmed

19121390    23622113    26354079    22118469    24845553    20798317    + More
23254933    28648823    30382153    25463417    23542700    22992520    25186727    25069045    29240929    20920257    23761445    15496914    17554307    28812685    24508170    30249741    29451363    20360741    23594743    9215903    18362917    19820115    28004739    26483478    21551351   

EMBL

DQ311167    ABD36112.1    BABH01001040    GDQN01007820    JAT83234.1    GAIX01014238    + More
JAA78322.1    NWSH01000189    PCG78611.1    ODYU01001917    SOQ38790.1    KQ459606    KPI91222.1    RSAL01000084    RVE48419.1    AGBW02008449    OWR53367.1    KQ460205    KPJ16852.1    NEVH01020341    PNF21604.1    KK852485    KDR22811.1    GL446901    EFN87136.1    GBYB01014664    JAG84431.1    GL436923    EFN71339.1    KQ435844    KOX71241.1    KZ288219    PBC32218.1    AMQN01005902    AMQN01005903    AMQN01005904    KB297123    ELU10947.1    NNAY01000312    OXU29297.1    KQ434886    KZC10163.1    LSMT01000042    PFX31010.1    RCHS01002732    RMX46083.1    GANO01003016    JAB56855.1    LBMM01001541    KMQ96118.1    UFQS01001277    UFQT01001277    SSX10101.1    SSX29823.1    GBYX01139924    JAO94240.1    UFQT01001006    SSX28420.1    KB202237    ESO91550.1    GGFJ01006464    MBW55605.1    HADX01002404    SBP24636.1    JH818584    EKC20200.1    GCES01151359    JAQ34963.1    GFDL01001241    JAV33804.1    GGFJ01006465    MBW55606.1    HAEF01019250    HAEG01004612    SBR72075.1    HADZ01022008    SBP85949.1    HAEH01003719    HAEI01016859    SBS19328.1    HAED01019325    HAEE01004190    SBR05775.1    HADY01004269    HAEJ01005869    SBS46326.1    HAEA01003059    SBQ31539.1    HAEB01003667    SBQ50194.1    ADMH02002214    ETN57760.1    GGFJ01006448    MBW55589.1    GGFJ01006447    MBW55588.1    GGFM01003765    MBW24516.1    CM012439    RVE74625.1    KQ979074    KYN22817.1    GGFK01010651    MBW43972.1    GGFK01010525    MBW43846.1    NEDP02001812    OWF52369.1    KK107413    QOIP01000005    EZA51157.1    RLU22849.1    ABQF01124493    ABQF01124494    ABQF01124495    BX000453    CT030217    BC093280    IACJ01156791    LAA62987.1    AFYH01032452    AFYH01032453    AFYH01032454    AFYH01032455    AFYH01032456    AFYH01032457    AFYH01032458    AFYH01032459    AFYH01032460    AFYH01032461    KQ971312    EEZ99433.2    IACN01062167    LAB56700.1    GEZM01039943    JAV81076.1    JXUM01027703    KQ560798    KXJ80856.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000283053    UP000007151    UP000053240    + More
UP000235965    UP000027135    UP000008237    UP000005203    UP000000311    UP000053105    UP000242457    UP000007879    UP000014760    UP000215335    UP000085678    UP000076502    UP000225706    UP000275408    UP000261520    UP000036403    UP000192220    UP000087266    UP000242638    UP000192224    UP000030746    UP000261480    UP000261620    UP000002852    UP000005408    UP000265100    UP000265160    UP000261660    UP000264800    UP000265020    UP000257200    UP000261460    UP000265000    UP000265140    UP000261540    UP000264840    UP000261380    UP000069272    UP000261360    UP000261420    UP000000673    UP000261580    UP000261600    UP000007303    UP000265040    UP000078492    UP000001038    UP000242188    UP000261640    UP000257160    UP000265180    UP000053097    UP000279307    UP000265200    UP000261560    UP000265080    UP000007754    UP000000437    UP000008672    UP000007266    UP000069940    UP000249989    UP000264820    UP000248480    UP000265300    UP000005226   

PRIDE

Q2F6A5    H9IVF9   

Pfam

PF05625   PAXNEB        + More
PF00335   Tetraspanin

Interpro

IPR008728   Elongator_complex_protein_4        + More
IPR018499   Tetraspanin/Peripherin       

ProteinModelPortal

Q2F6A5   H9IVF9   A0A1E1W8E8   S4PS22   A0A2A4K2X7   A0A2H1VD57   + More
A0A194PDA4   A0A3S2TK93   A0A212FI26   A0A194RGZ0   A0A2J7PZ33   A0A067RG07   E2BB45   A0A0C9RDL9   A0A088A4X1   E2A5E7   A0A0N0BE93   A0A2A3EKI2   A0A1X7VT92   R7UXB8   A0A232FG50   A0A1S3HW70   A0A154PE92   A0A2B4SQ55   A0A3M6TXB7   U5ESZ0   A0A3B3Z7G5   A0A0J7L0L6   A0A336KXH4   A0A0S7LXL3   A0A2I4APF8   A0A1S3KWL9   A0A3P9PF55   A0A1W5ASQ4   A0A336MEQ3   V4A920   A0A3B3YH25   A0A3Q3WZK6   A0A2M4BR91   A0A1A7Y2W9   M4AIN2   K1PV90   A0A3P8P429   A0A3P9C144   A0A146NT91   A0A1Q3G1X0   A0A2M4BRA0   A0A3Q3E8R3   A0A3Q3AU09   A0A3Q2G2N7   A0A3Q1EXU1   A0A3B4GQJ2   A0A3Q2PX22   A0A3P8Z714   A0A3B3QLL1   A0A1A8NSQ0   A0A1A8D1S5   A0A1A8SN36   A0A1A8J7X3   A0A1A8UFD9   A0A1A8DF68   A0A3Q3C6J7   A0A3B5LWS8   A0A182FM22   A0A1A8EWH0   A0A3B4YUQ4   A0A3B4VDQ6   W5J4H7   A0A3Q4GYA1   A0A3Q3JJG1   A0A2M4BRA1   A0A2M4BS14   H3D8G4   A0A2M3Z7L1   A0A3S2N5L7   A0A3Q1KD25   A0A195EDC3   A0A2M4ATC8   A0A2M4AST6   H2M204   A0A210QUG7   A0A3Q3ST86   A0A3Q1B0S3   A0A3P9K7F5   A0A026W511   A0A3P9H4K9   A0A3B3D2X0   A0A3P8SF07   H0Z312   Q566Y1   A0A2D4GTD3   H3B3C7   D6W8H4   A0A2D4PF74   A0A1Y1MB31   A0A182H6Z7   A0A3Q2Y3C6   A0A2Y9D958   A0A340XHU9   H2SZ22  

KEGG

692808    K11375 elongator complex protein 4 | (RefSeq) elongation protein 4-like protein

GO

GO:0033588   GO:0002098   GO:0016021   GO:0008023   GO:0006357   GO:0000993   GO:0005737   GO:0005654   GO:0008607   GO:0006457   GO:0006950   GO:0051082   GO:0005216   GO:0006811   GO:0022891   GO:0003707   GO:0051537  

PANTHER

PTHR12896  

Subcellular location

Nucleus  

Length:

369

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.68577

Exp number, first 60 AAs:

0.04977

Total prob of N-in:

0.02964

outside

1  -  369

 

 

Pi

38.469002

Theta

155.6055

Tajima's D

-1.145254

CLR

1162.563222

CSRT

0.114144292785361

Interpretation

Uncertain